|
|
Homology
BLAST of mRNA_P-fluviatile_contig79.14256.1 vs. uniprot
Match: D8LD38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD38_ECTSI) HSP 1 Score: 196 bits (499), Expect = 1.050e-54 Identity = 124/290 (42.76%), Postives = 157/290 (54.14%), Query Frame = 1
Query: 55 TMRSEQIATAGLMIRYCVLLG---FCFAGGLAFAVGAA----LGNVDLDTTLPLSTAAFWQFAHSQDFYRNTRQQTSTVRQEVVELSNWVQADDPGTEVPPASATPRGPPRPQPGRVLLGRSSSPPSSSLDRQQQEHEQLEPRLWRRRARLTYAISSPFGSSDATVVQEHTLLEQPHEADDGGGRCTGGGGTGDGRGVMICYSESDCITGFPMVPGNLSVKTTFLVTPAEDGD-PKRVRVRVGVVVDDIELPRRLQFLSKRVSKMIGNGGIKQAEGWLAEMIKAGSLMAE 900
T + ++A+ + VLLG A G++ A AA +G + LDTTLP+ A FW+FAHS+DFYR+TRQQ++ VRQ+VV+L++W QAD + EHTLL+ H+ GGGG G ICY+ESDCITGFPMVPG+LSVKTTFLVTP EDG +RVRVRVGVVV++IELP+RL+FLSKRVSK++GNGG KQAE WL EM+K GS A+
Sbjct: 2 TRKRTRVASGS---HFGVLLGGATLLLAVGISDAFAAAGPSTVGTIGLDTTLPMDAATFWRFAHSKDFYRSTRQQSAVVRQQVVDLTSWEQADG-----------------------------------------------------------------------IDAEHTLLDDRHQK--------GGGGGG------ICYTESDCITGFPMVPGDLSVKTTFLVTPVEDGGHEERVRVRVGVVVEEIELPKRLRFLSKRVSKIVGNGGRKQAEKWLGEMVKEGSPAAD 203
BLAST of mRNA_P-fluviatile_contig79.14256.1 vs. uniprot
Match: A0A6H5K1L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L1_9PHAE) HSP 1 Score: 164 bits (415), Expect = 4.910e-43 Identity = 88/147 (59.86%), Postives = 105/147 (71.43%), Query Frame = 1
Query: 463 LWRRRARLTYAISSPFGSSDATVVQEHTLLEQPHEADDGGGRCTGGGGTGDGRGVMICYSESDCITGFPMVPGNLSVKTTFLVTPAEDGD-PKRVRVRVGVVVDDIELPRRLQFLSKRVSKMIGNGGIKQAEGWLAEMIKAGSLMAE 900
L +RRA L YAI+SPF SSDA VVQEHTLL+ H+ GGG ICY+E DCITGFPMVPG+LSVK TFLVT +DG +RV VRV VVV + ELP+RL+FLSKRVS ++G+GG KQAE WL EM+K GS +A+
Sbjct: 63 LLQRRATLNYAITSPFDSSDAKVVQEHTLLDDRHQEGGGGG---------------ICYTERDCITGFPMVPGDLSVKPTFLVTRVDDGGHTERVHVRVEVVVKETELPKRLRFLSKRVSDIVGDGGRKQAEKWLGEMVKEGSPVAD 194
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_000340.1 |
| Exons | 3 |
| Model size | 2286 |
| Cds size | 855 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817211.0824375-UTR-P-fluviatile_contig79:173564..173621 | 1622817211.0824375-UTR-P-fluviatile_contig79:173564..173621 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig79 173565..173621 + |
| 1693571519.735511-UTR-P-fluviatile_contig79:173564..173621 | 1693571519.735511-UTR-P-fluviatile_contig79:173564..173621 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig79 173565..173621 + |
| 1622817211.1232045-UTR-P-fluviatile_contig79:177514..178888 | 1622817211.1232045-UTR-P-fluviatile_contig79:177514..178888 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig79 177515..178888 + |
| 1693571519.7936115-UTR-P-fluviatile_contig79:177514..178888 | 1693571519.7936115-UTR-P-fluviatile_contig79:177514..178888 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig79 177515..178888 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817211.0937831-CDS-P-fluviatile_contig79:173621..173716 | 1622817211.0937831-CDS-P-fluviatile_contig79:173621..173716 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 173622..173716 + |
| 1693571519.748011-CDS-P-fluviatile_contig79:173621..173716 | 1693571519.748011-CDS-P-fluviatile_contig79:173621..173716 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 173622..173716 + |
| 1622817211.1035943-CDS-P-fluviatile_contig79:175487..175614 | 1622817211.1035943-CDS-P-fluviatile_contig79:175487..175614 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 175488..175614 + |
| 1693571519.7637818-CDS-P-fluviatile_contig79:175487..175614 | 1693571519.7637818-CDS-P-fluviatile_contig79:175487..175614 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 175488..175614 + |
| 1622817211.1134088-CDS-P-fluviatile_contig79:176881..177514 | 1622817211.1134088-CDS-P-fluviatile_contig79:176881..177514 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 176882..177514 + |
| 1693571519.7746127-CDS-P-fluviatile_contig79:176881..177514 | 1693571519.7746127-CDS-P-fluviatile_contig79:176881..177514 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig79 176882..177514 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig79.14256.1 >prot_P-fluviatile_contig79.14256.1 ID=prot_P-fluviatile_contig79.14256.1|Name=mRNA_P-fluviatile_contig79.14256.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=285bp
MRSEQIATAGLMIRYCVLLGFCFAGGLAFAVGAALGNVDLDTTLPLSTAA FWQFAHSQDFYRNTRQQTSTVRQEVVELSNWVQADDPGTEVPPASATPRG PPRPQPGRVLLGRSSSPPSSSLDRQQQEHEQLEPRLWRRRARLTYAISSP FGSSDATVVQEHTLLEQPHEADDGGGRCTGGGGTGDGRGVMICYSESDCI TGFPMVPGNLSVKTTFLVTPAEDGDPKRVRVRVGVVVDDIELPRRLQFLS KRVSKMIGNGGIKQAEGWLAEMIKAGSLMAETTA* back to topmRNA from alignment at P-fluviatile_contig79:173565..178888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig79.14256.1 ID=mRNA_P-fluviatile_contig79.14256.1|Name=mRNA_P-fluviatile_contig79.14256.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5324bp|location=Sequence derived from alignment at P-fluviatile_contig79:173565..178888+ (Porterinema fluviatile SAG_2381) GCGCAAACTTTTGTGTATCTCCCCTTTCCCTGCTTCCCTCTCACTGCCCT
GGAAACCATGCGCTCAGAACAAATAGCCACGGCCGGGCTGATGATTCGAT
ACTGTGTTTTGCTGGGATTCTGCTTCGCCGGAGGCCTGGCCTTTGCAGTT
GGGTGAGTGATCGGCCAAAGCTGTGTAGCATCTCCGGTTGTGGGATGTCC
CGGAGTGGGTAGAAGGCGGTTGAGAGAAAGAAAGGCATTCGGTCGTTCGT
TCCGCTGCGGTCTCCTCTGCTGCGTTTCGCACGCTCTCCTGTCCACTTGT
CCCCACACTCTCAGACAGGTGCTTGTGGTTTGTTGGAAATGGTATTCATG
AGTGGAAACGTTGTATTCATGGCCCACCCCCTTGTTTTGGCGGATTTTCA
TACGTTGTTTGTTGTAGAGGGTGTGCTGCGGCCGGACGGCGAGTTGAAAT
TGAAAAGAAGATACGGCATTTCTCCAACACTCTGGCTGTCACACTCGCTC
GACCACCCCCCCATATTTTTCTCAAGACGAGGCGAACGTGTGCAGCAACT
GTCATCAGGAACACCCTGTGACATGATTCACCGAGATGTGATTTTTTCAA
CGAATCTTGTACGCCACCAAGACCAAGCGTTCAAATAATTCGTCAGCCCT
TTCCTGTCCAACAATGGCATTCCCGACATCATCACACTCACCAAGGCACA
ATCAGCTACAGCAGCGTCAATTTGTAGCTAGAGAAGGCTAAGGCGCACTC
CTTCCCTGCCCTCTTTCGCTCTGACACGCTCCCTCCGTTTATGTCTGCAA
CAGACAGCAGCGACAACACAGCCGTCACGCACAAAAGTGCGCCCTCTCGT
GCCCCTGCGGAGAGACACATCGTTGAAGTTTGCACATTAATCTGGAATTA
ATCAAGTGTCGTCCCTACAGAACACCCGTTACTCACGAGCAATATGTCCA
ACCCATTGTACTCTTGGGTCTGCTCTTGAAACACCAATAACCACACACGG
GGGATACCGCATGACACGCTGTCGCGATTACCGTAGGTACCACTCCAAAT
CTCCTTCGTGGGACGTGTTTGTCCTTTCCTGATTGAACTTAGTCCTGAGC
AACATATCCAAGATCAACAAAATCTTCAACTTGTCGTGTGCTTTTTTTTG
TGTGCAAGAGCGAGGACAAGCCAAGAGTCGAACATCGCGAATAGGGAAAA
GCGTCATGTCCACTTGCCATCGAACCGCCGGCACGATGCTTTGATTCATC
CTGTTTTCTCGTTTTGTTTACCTTTTTGGAAGAATACGCCAAACATCAGA
AAGGGAAGACCACCGTGACAGAGAGAGGGCTAACCCTAACCCCAACCCTA
ACCCTGACCCTAACCGTATCCCTATTTCTCGTACTCGAAACCCACCTCCC
TCTCTTGAAAGAATAAAATGCGTTCGTTCATGTTGATGGTCGAAGGTGAG
TGATGTTTCTTGAAGACGATGCCGCCGGCGGCCATGTTGGAACGTTTCAT
CTTGACACGAAGGATGGCTTAGCCGGGACCTCCTCCGTACGTGCATATTT
GCTGCTGGTGTGCGGACAAGACCCCCTGTTCTGGTGGATACCCAAGAACC
GTTCGTGCGTGCTCCCTTTTTTAGGCATGAGGCACCTGCGACGAAATGCA
GAACTTGGCAATCTGCGATTGAAATAGGGGGTCTTGCAAATACCTTCGCA
GGATCTCGAACCTTTGTTTCAACGGGGACTCGTACTTTTGTTCCAGCAGG
ACTGTCGTACATGGTTTGATTTTCCTCGCAGCAAAAGACAGATCATTGGA
CAACCAACCAGCCAACCATCCAATGAATTAGTGAAAACACAAGCCTCTAC
CTTAAATATTCCCTGATCACGTTGCAATATCTTCCTGGTTGATCACCCAA
CCCCATCGGCCTCGGCTGTTTAGGGCTGCCCTTGGAAACGTCGACCTCGA
CACGACGCTGCCCCTAAGCACGGCCGCCTTCTGGCAGTTTGCGCACTCGC
AAGACTTCTACCGGAACACGAGACAACAAACCTCGACCGTGCGACAAGAG
GTGTGTACGTGAGTGAAAGGGGGGGGGTGGGGACCCGGCGTACGCCCACG
CCTCTGACAGGGCAGGAACATTCATGTGTCCGCGTTTTTTTCGTTTGTGT
TCTTATTTGTTTTGCCTAGGCGGGGGAGATGTCCTTTCGACTGTTTCGTT
AATGTTTGTCATGGCCCAAGAGGTGCGAGAGAGAAAGCGGAGGAGAAGGA
CCTGGCGTTTGCTCACGCCTCTGAACGGACGGGAGCATTCATGTGTGCGT
GTATGTTTTTTGTTTTGGGTGAGTGTATTTTATCTTGTGTATTCAGGCGG
GGAGGGTAGATGCCACTCGGATTTTATTCCGCATCTTGTTTTTTACAGCA
CAAATCATCTCGTATCGCTAAGCTCGTACCCAGTAGGTGATCGACTGATA
TTTGAAGTGCGGGGCACTTTGACACTATACGAGGCATGATCCACGCAAGT
GTACTTCAATCGGGGAAGCAATCGCTTCAGTACAAGCCTACGTACCGCCT
CTGAACAGATCAAAAGGATATAGACTTTCGGAGCGCGTGGTGTGCTTTTT
TTTCTGCAGGGTTTCAGCAACGACGTTGGTCGTTGGGCTTATCGTGCTGC
TCTAGGGTTTCAGCAATGACGTTGTCCATCGGCCGCAGAAGTCCATCGCC
TTGTCAGCATCCTTGTTCCGCATTAAGCCCTCCTACAACGTATTCTCTTC
TCCGAAGAAAAACATTTCACAACAACAGCAATGCTCGGCAGGCGTGTACG
CCGTCGGCGATCGACTGATTTTTTATGACGGGAGATATTTTGTTAAGGTT
GGCATGGAATCGAATTTGTGTGTCGAAATCGGAAGAAAAATCGCGTAAGG
AAAACCAACAGGCTTTGTCCACAGATAAATGTGATTACTCGCCTCGCCAA
TCCCCTAGCCGCTGTTGTTCTGCTCCACTTATGTGGATCCCCCTGCCCCG
CACTGTGGATCTCTCACACCTTTCCGTATTGCAAAAAATGAACTTTGAGT
TTCGATGTTCGACGGATTCACTTGTGCGTCAAGGGAAGCATGCCCGCAGT
AAATCTCGAACACCCTGACGACTGCGCCTCCCGCCGCAATTCCTGGCATC
TCCTCCCACTTCTCTCTCCGCTAATCATACCCACTCGGTTGTCCTCGCCT
AGGTTCGCTCGCCGTGCTTGCCCACACCGGCGTACTCCCGACTCATCTCA
CTCACTTTTGCTTTGCTCACCTTGACACACCTTCGTGTATGCGGAAATTA
TCTCCATCACACCGCAGGTCGTTGAACTATCGAACTGGGTGCAAGCCGAC
GACCCGGGCACCGAAGTCCCTCCGGCCTCGGCGACACCACGGGGCCCCCC
GCGGCCGCAACCGGGGCGCGTCCTCCTCGGCCGGTCGAGCTCGCCGCCCT
CCTCCTCTCTAGACCGCCAACAACAAGAACACGAACAATTGGAGCCGCGG
CTGTGGCGCCGGCGAGCTCGTTTGACGTACGCAATTTCGTCCCCGTTCGG
GTCATCGGACGCCACCGTCGTGCAGGAACACACGCTGCTGGAGCAGCCCC
ACGAGGCGGACGATGGCGGGGGTAGGTGTACAGGTGGCGGGGGCACCGGC
GACGGAAGGGGGGTGATGATATGCTACTCAGAGAGCGACTGCATCACGGG
GTTCCCAATGGTGCCCGGGAACCTGTCCGTTAAGACGACGTTCTTGGTGA
CGCCCGCAGAGGACGGGGACCCGAAGCGTGTCAGGGTCAGGGTGGGGGTA
GTGGTGGACGACATCGAGCTCCCGAGACGGCTGCAGTTCTTAAGCAAGCG
GGTCAGCAAGATGATCGGGAACGGGGGCATCAAGCAGGCGGAGGGGTGGC
TCGCGGAGATGATCAAGGCGGGGTCACTCATGGCGGAAACGACCGCATGA
CAGGAAAAGAGCACTCAGGGGCAAGCTGTGATAAATATGTTCACGCTCCT
TGCCGACTCGCCCAACACGGGTCTCTACGGATACGAAAATACCCATCCCC
CCCACTTGTACTGGTGTGAAGGCGCAAGGGACGTGGGCGACGTTACGTGC
GAAGTGGGAGCCGTGGCGAAGCTTGTCTGTCAGGGTTTCGATGGTATTTC
AGGCCTTGTGTGCTCACGGAGGCGGCAGGCTGTACACACAATGGCAACAT
TTTTTTCACAGGCTCAACAGGGAATGCTGTGGTTGACGCGGCGATGTTTT
GTGCGAATAGCCGCAAGGAAAACTTCAAATCACCGGGCGTCCCACGTACA
TTGGCAGTTGTAAAGAATATATTGGTGTGCGTACGCTTACCCCCTGTGTT
TTGCCAGCCGAGATTGCTCCTTCTGTCGCATCTCTTGCTGTTCGTTTGTG
TGTTCGCGTGAAGAAATGTCCTTGACCTCGCTTTGACGCTCTTTCCACAG
GGTGGGGTACGCCTCACATTTCGAAGGAGTTCGGATTTGTTCCTGCTCTA
TCATGTGGTCGTGGGCTGCTTTGACGTTTTGCCTTGCATGAAGCAGCGGG
CTATATACACAGGGAGAACAACACTGCAATACATGCATCGAATGCTGCCA
CAGGGCCGGCGCGCGCCCTCTTTCGCCGCAAAATGTCGGCGCTGTGCTAT
CGAACTTTGTTGATATTAGGATGTTGGAGATGGCGACGGCGACGCTATTT
AATTGTTTCATTCGAATATCGTGTGGTAGGTTTGGCCGCTCTTGTTTCTC
TGTGTGTGATGATGTTGGTCTGTGTTCCCCCGCCGACTTCCCGCAGTCCG
GCCGTCGTGCGTGTGTTGGTGTGTAGTTTTTGCACTGCCTGCCATCTCGC
CTCCCGGGCGTTCATCTCCACACGCCGTGTTGCAGTAAGTTTGTCCGTGA
TCAGTGCAGCGTGAATACTTGTCGCACTCCCCAGAAATATTCAGCAGAAG
AACGTGTGTACGCTTGAGTTCCGGTGATGCCTCCCTTAACTTGCTGCAGG
CGCGTGCGGGTGTGCTTCACGGGTTTTCCGAACATCACGCAGGACTTGAA
GCGATACATAATTCCTCGCAATAAGAAAGGGGGCTGATCCTGGGCACACT
GACATGTTTGTTGAATCAGCAGCATCGGTTTGTCACGTTGGACGGTTGGT
GTTGTCTTTCCGCAGACTTGTGACACTTGATTATGTACAGAGGGAAGAGC
GTGATGCAAGTGGTGGGGGGAGAATAACGTAATATCGTGTAAGGGTACAT
AATGTGGATGTGAAATATTTTTCTCGAATATGCAGCTCTTTTCATAAATT
ACGGGGAAGTAAAGCATGATGTGC back to topCoding sequence (CDS) from alignment at P-fluviatile_contig79:173565..178888+ >mRNA_P-fluviatile_contig79.14256.1 ID=mRNA_P-fluviatile_contig79.14256.1|Name=mRNA_P-fluviatile_contig79.14256.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1710bp|location=Sequence derived from alignment at P-fluviatile_contig79:173565..178888+ (Porterinema fluviatile SAG_2381) ATGCGCTCAGAACAAATAGCCACGGCCGGGCTGATGATTCGATACTGTGT TTTGCTGGGATTCTGCTTCGCCGGAGGCCTGGCCTTTGCAGTTGGATGCG CTCAGAACAAATAGCCACGGCCGGGCTGATGATTCGATACTGTGTTTTGC TGGGATTCTGCTTCGCCGGAGGCCTGGCCTTTGCAGTTGGGGCTGCCCTT GGAAACGTCGACCTCGACACGACGCTGCCCCTAAGCACGGCCGCCTTCTG GCAGTTTGCGCACTCGCAAGACTTCTACCGGAACACGAGACAACAAACCT CGACCGTGCGACAAGAGGGCTGCCCTTGGAAACGTCGACCTCGACACGAC GCTGCCCCTAAGCACGGCCGCCTTCTGGCAGTTTGCGCACTCGCAAGACT TCTACCGGAACACGAGACAACAAACCTCGACCGTGCGACAAGAGGTCGTT GAACTATCGAACTGGGTGCAAGCCGACGACCCGGGCACCGAAGTCCCTCC GGCCTCGGCGACACCACGGGGCCCCCCGCGGCCGCAACCGGGGCGCGTCC TCCTCGGCCGGTCGAGCTCGCCGCCCTCCTCCTCTCTAGACCGCCAACAA CAAGAACACGAACAATTGGAGCCGCGGCTGTGGCGCCGGCGAGCTCGTTT GACGTACGCAATTTCGTCCCCGTTCGGGTCATCGGACGCCACCGTCGTGC AGGAACACACGCTGCTGGAGCAGCCCCACGAGGCGGACGATGGCGGGGGT AGGTGTACAGGTGGCGGGGGCACCGGCGACGGAAGGGGGGTGATGATATG CTACTCAGAGAGCGACTGCATCACGGGGTTCCCAATGGTGCCCGGGAACC TGTCCGTTAAGACGACGTTCTTGGTGACGCCCGCAGAGGACGGGGACCCG AAGCGTGTCAGGGTCAGGGTGGGGGTAGTGGTGGACGACATCGAGCTCCC GAGACGGCTGCAGTTCTTAAGCAAGCGGGTCAGCAAGATGATCGGGAACG GGGGCATCAAGCAGGCGGAGGGGTGGCTCGCGGAGATGATCAAGGCGGGG TCACTCATGGCGGAAACGACCGCATGAGTCGTTGAACTATCGAACTGGGT GCAAGCCGACGACCCGGGCACCGAAGTCCCTCCGGCCTCGGCGACACCAC GGGGCCCCCCGCGGCCGCAACCGGGGCGCGTCCTCCTCGGCCGGTCGAGC TCGCCGCCCTCCTCCTCTCTAGACCGCCAACAACAAGAACACGAACAATT GGAGCCGCGGCTGTGGCGCCGGCGAGCTCGTTTGACGTACGCAATTTCGT CCCCGTTCGGGTCATCGGACGCCACCGTCGTGCAGGAACACACGCTGCTG GAGCAGCCCCACGAGGCGGACGATGGCGGGGGTAGGTGTACAGGTGGCGG GGGCACCGGCGACGGAAGGGGGGTGATGATATGCTACTCAGAGAGCGACT GCATCACGGGGTTCCCAATGGTGCCCGGGAACCTGTCCGTTAAGACGACG TTCTTGGTGACGCCCGCAGAGGACGGGGACCCGAAGCGTGTCAGGGTCAG GGTGGGGGTAGTGGTGGACGACATCGAGCTCCCGAGACGGCTGCAGTTCT TAAGCAAGCGGGTCAGCAAGATGATCGGGAACGGGGGCATCAAGCAGGCG GAGGGGTGGCTCGCGGAGATGATCAAGGCGGGGTCACTCATGGCGGAAAC GACCGCATGA back to top
|