mRNA_P-fluviatile_contig76.14065.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig76.14065.1
Unique NamemRNA_P-fluviatile_contig76.14065.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig76.14065.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.680e-5
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   79 RYAALDAYACLKLHTRINELSDSIFREG 162
            RYAALDAYACL LH RI ELSDSIFR+ 
Sbjct:  391 RYAALDAYACLLLHGRIGELSDSIFRDA 418
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig76.14065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE1.680e-582.143'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig76contigP-fluviatile_contig76:52932..53429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size164
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817190.2065444-CDS-P-fluviatile_contig76:52931..530111622817190.2065444-CDS-P-fluviatile_contig76:52931..53011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 52932..53011 +
1693571453.2320318-CDS-P-fluviatile_contig76:52931..530111693571453.2320318-CDS-P-fluviatile_contig76:52931..53011Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 52932..53011 +
1622817190.2172232-CDS-P-fluviatile_contig76:53347..534291622817190.2172232-CDS-P-fluviatile_contig76:53347..53429Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 53348..53429 +
1693571453.241229-CDS-P-fluviatile_contig76:53347..534291693571453.241229-CDS-P-fluviatile_contig76:53347..53429Porterinema fluviatile SAG_2381CDSP-fluviatile_contig76 53348..53429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig76.14065.1prot_P-fluviatile_contig76.14065.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig76 52932..53429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig76.14065.1

>prot_P-fluviatile_contig76.14065.1 ID=prot_P-fluviatile_contig76.14065.1|Name=mRNA_P-fluviatile_contig76.14065.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=54bp
RGLPTLAGYRLPLWWTCALWLWSVKWRYAALDAYACLKLHTRINELSDSI
FREG
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mRNA from alignment at P-fluviatile_contig76:52932..53429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig76.14065.1 ID=mRNA_P-fluviatile_contig76.14065.1|Name=mRNA_P-fluviatile_contig76.14065.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig76:52932..53429+ (Porterinema fluviatile SAG_2381)
CGAGGCTTGCCAACTCTTGCGGGTTACAGGTTACCCCTGTGGTGGACCTG
CGCTCTTTGGCTGTGGAGCGTAAAGTGGAGGTGGGGCTCAGGCGGGGGCT
GGCAGACACGTGTGTTCACCTTCTGGGGGCCCGCTTACCGAAGGGTTGTG
GCGTGAGGATATCCAGGTGGAACAAGTCCGGGCTGTCGGGCGCGAGCGCG
AGTACGATGAAAACAATTCGGATTGTCGTCAAGCATGACGAGGCCGCCAC
GAACGTTGTGTCCTCCGCGCGATGTTTTGGCTTCCCAGTCCGGCATATGA
GTTCTCGTCTTGGCACTGGTAGATGCAGAACCGCCATTTTTTCTCGACCA
TTCCCATTTCCAACCTCTTCCTGACTGAGTTCATCATCTGTACCTGCTTT
GTGTGTTGCCGATCAGGTACGCGGCACTCGATGCCTACGCATGTCTGAAG
CTCCATACACGCATCAACGAGCTGTCTGACTCGATTTTTAGAGAGGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig76:52932..53429+

>mRNA_P-fluviatile_contig76.14065.1 ID=mRNA_P-fluviatile_contig76.14065.1|Name=mRNA_P-fluviatile_contig76.14065.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig76:52932..53429+ (Porterinema fluviatile SAG_2381)
CGAGGCTTGCCAACTCTTGCGGGTTACAGGTTACCCCTGTGGTGGACCTG
CGCTCTTTGGCTGTGGAGCGTAAAGTGGAGCGAGGCTTGCCAACTCTTGC
GGGTTACAGGTTACCCCTGTGGTGGACCTGCGCTCTTTGGCTGTGGAGCG
TAAAGTGGAGGTACGCGGCACTCGATGCCTACGCATGTCTGAAGCTCCAT
ACACGCATCAACGAGCTGTCTGACTCGATTTTTAGAGAGGGCGTACGCGG
CACTCGATGCCTACGCATGTCTGAAGCTCCATACACGCATCAACGAGCTG
TCTGACTCGATTTTTAGAGAGGGC
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