mRNA_P-fluviatile_contig75.14000.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig75.14000.1
Unique NamemRNA_P-fluviatile_contig75.14000.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Match: A0A6H5JB99_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB99_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.200e-25
Identity = 85/172 (49.42%), Postives = 96/172 (55.81%), Query Frame = 1 
Query:    1 DTSEAFREGRHASLRSKFVSSFSRLVSTAQDRDDAEGGREILG--KSVRPPVS-PRRNSVSGGSLRA------------GGRSSXXXXXVGRALGLKEFMHRTRVLGLYRGILQRARAIEDKDVAAEARRQFKSFRHETDSLKIQMLVTDATNYLETLQGTTGETGTSIGGG 471
            D++EAFREG H       V+ F R  ST Q    A G          V P    PR  S S                  G    XXXXX   ALGLKEFMHR RVL LYRGIL+RARA+EDKDVA EARRQFKS   ETD LK+QM+V DATN+LE +QG+T   G+   GG
Sbjct:   19 DSTEAFREGSHTKNARPRVAPF-RSASTMQQCAAACGTESTAAVWSCVDPWTGRPRPRSSSSXXXXXXXXXXXXXXXXXGSXXXXXXXXXXXALGLKEFMHRARVLELYRGILKRARALEDKDVADEARRQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGRGG 189
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BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Match: D8LRC8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 5.160e-22
Identity = 50/74 (67.57%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  253 MHRTRVLGLYRGILQRARAIEDKDVAAEARRQFKSFRHETDSLKIQMLVTDATNYLETLQGTTGETGTSIGGGE 474
            MHR RVL LYRGIL+RARA+EDKDVA EAR+QFKS   ETD LK+QM+V DATN+LE +QG+T   G+  GGG+
Sbjct:    1 MHRARVLELYRGILKRARALEDKDVADEARKQFKSCLGETDPLKVQMMVADATNHLEAMQGSTRGAGSGGGGGD 74
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BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Match: A0A835YQF9_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQF9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.730e-10
Identity = 33/74 (44.59%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:  241 LKEFMHRTRVLGLYRGILQRARAIEDK----DVAAEARRQFKSFRHETDSLKIQMLVTDATNYLETLQGTTGET 450
            LK+F+ + +VL  YR +L+ ARA+ED+    +VAA+ R +++++ HETDSLK++ML+ +A  +++TLQGT   T
Sbjct:   31 LKDFVRKRQVLHSYRQLLKCARAMEDRPSGQEVAAQVRERYRAYAHETDSLKLRMLLAEAAQHIDTLQGTVART 104
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BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Match: UPI001C03B48E (LYR motif-containing protein 2 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C03B48E)

HSP 1 Score: 55.5 bits (132), Expect = 1.440e-6
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  232 ALGLKEFMHRTRVLGLYRGILQRARAIED----KDVAAEARRQFKSFRHETDSLKIQMLVTDATNYLETLQGT 438
            AL LK+F+HR RVLG+YR +L+  R + D    K +   AR +F+  +  T+   I+M++T A N+LETLQ T
Sbjct:   10 ALSLKQFLHRQRVLGIYRTMLRTIRQVPDEADRKYLKDWAREEFRRNKDATNQDAIRMMITQARNHLETLQKT 82
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BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Match: A0A8C3AAP9_CYCLU (LYR motif-containing protein 2 n=2 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AAP9_CYCLU)

HSP 1 Score: 56.2 bits (134), Expect = 1.560e-6
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  136 VRPPVSPRRNSVSGGSL-RAGGRSSXXXXXVGRALGLKEFMHRTRVLGLYRGILQRARAIED----KDVAAEARRQFKSFRHETDSLKIQMLVTDATNYLETLQGTTGETGT 456
            ++P + P+  + S   +  AG            AL LK+F+ R RVLG+YR +++  R + D    K ++  AR +FK  +  TD   I+M++T A N+LE LQG+    G+
Sbjct:    8 LKPAIEPKEATQSQHPICDAGAGKMGVSRLPSAALSLKQFLQRQRVLGIYRNMIRTIRKVPDEADRKYLSDWARDEFKRNKSATDQDAIRMMITQANNHLEELQGSLALAGS 119
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig75.14000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JB99_9PHAE6.200e-2549.42Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LRC8_ECTSI5.160e-2267.57Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A835YQF9_9STRA1.730e-1044.59Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
UPI001C03B48E1.440e-643.84LYR motif-containing protein 2 n=1 Tax=Melanotaeni... [more]
A0A8C3AAP9_CYCLU1.560e-633.04LYR motif-containing protein 2 n=2 Tax=Cyclopterus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig75contigP-fluviatile_contig75:21751..23247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionComplex 1 LYR protein
Ec32 orthologEc-06_003010.1
Exons2
Model size817
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig75.14000.1prot_P-fluviatile_contig75.14000.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig75 22085..22995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817183.3988752-UTR-P-fluviatile_contig75:21750..220841622817183.3988752-UTR-P-fluviatile_contig75:21750..22084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 21751..22084 -
1693571417.5046673-UTR-P-fluviatile_contig75:21750..220841693571417.5046673-UTR-P-fluviatile_contig75:21750..22084Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 21751..22084 -
1622817183.4357016-UTR-P-fluviatile_contig75:22995..232471622817183.4357016-UTR-P-fluviatile_contig75:22995..23247Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 22996..23247 -
1693571417.5377474-UTR-P-fluviatile_contig75:22995..232471693571417.5377474-UTR-P-fluviatile_contig75:22995..23247Porterinema fluviatile SAG_2381UTRP-fluviatile_contig75 22996..23247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817183.4125383-CDS-P-fluviatile_contig75:22084..222701622817183.4125383-CDS-P-fluviatile_contig75:22084..22270Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 22085..22270 -
1693571417.5152416-CDS-P-fluviatile_contig75:22084..222701693571417.5152416-CDS-P-fluviatile_contig75:22084..22270Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 22085..22270 -
1622817183.424624-CDS-P-fluviatile_contig75:22950..229951622817183.424624-CDS-P-fluviatile_contig75:22950..22995Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 22951..22995 -
1693571417.5251594-CDS-P-fluviatile_contig75:22950..229951693571417.5251594-CDS-P-fluviatile_contig75:22950..22995Porterinema fluviatile SAG_2381CDSP-fluviatile_contig75 22951..22995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig75.14000.1

>prot_P-fluviatile_contig75.14000.1 ID=prot_P-fluviatile_contig75.14000.1|Name=mRNA_P-fluviatile_contig75.14000.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=77bp
MHRTRVLGLYRGILQRARAIEDKDVAAEARRQFKSFRHETDSLKIQMLVT
DATNYLETLQGTTGETGTSIGGGEGR*
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mRNA from alignment at P-fluviatile_contig75:21751..23247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig75.14000.1 ID=mRNA_P-fluviatile_contig75.14000.1|Name=mRNA_P-fluviatile_contig75.14000.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1497bp|location=Sequence derived from alignment at P-fluviatile_contig75:21751..23247- (Porterinema fluviatile SAG_2381)
GATACGAGCGAGGCATTCCGAGAAGGGCGCCATGCGAGCTTGAGATCAAA
ATTTGTATCCTCATTCTCGCGTTTAGTATCAACGGCACAGGACAGGGATG
ACGCCGAGGGTGGACGTGAGATCCTGGGCAAAAGCGTCCGTCCACCTGTA
AGCCCCCGGAGAAATAGTGTCAGCGGCGGCAGCTTAAGAGCCGGCGGCCG
CAGTTCGAGAGCCGCAGGGAAAGTGGGCCGGGCTCTCGGGCTGAAGGAGT
TCATGCACCGCACCCGAGTGCTTGGCCTCTATCGTGGCATACTACAGGTG
AGGAGAGAAACATGGAAGTCCTTCTACTTGTGTCGCGGTTGCCTTCCTTT
TGAAGGAAGGGGGGGGGGGGACTCTAAATGCGACGTTCGGTAACAATGAC
TGCAAGCCGTGGCGAAACACACCAAATGTAGCTTTTATGTACTGCATGTT
CGCGGCTGATACAGTTGCGATACTTCATTGCTGCTGCTGATCTGCAACAG
AAGTCAGGGAGGAACACAGCATTGATCTGTCAAGGGAACATGGGTTGCAC
ACCTATCGTAAAATTGCCACGTGAAACTTACTGCTGATGCACGAAAAACA
GTAGGCGATATGATCCGGCGTCGCACTTGTGCGCCTTCTCTTTCGGCACC
GGCGTCGAAGTGTCGGCACGATTGAACACTCGTCGGTTGGTTCATGTGGA
CGATTCCGTGTGAGACCCCTGCACTCCTTCACATGTTCTGCCCAGCGTAC
CACTACAGGTCAACACAACAATAATTGAGAAGCACAGGAAACCTTCACAG
CAGTGCAGTCTCTGGTGTCCAGTAGTATCTCCGCCCAGCGATCACAGAGG
TGCAACACACTAAACTGGCTTTTCCCTTTTGAGCGCCACCTTCGCATGCC
TGCCGCTTGTGCGTCGCATACACCGGACCCCTTCGTCGTCGACCCGTGCG
CAACACGGCGATTCTACGAAAGTTCAGCGGGCCCGAGCCATCGAAGACAA
GGACGTGGCCGCAGAGGCTAGAAGACAATTTAAGTCTTTCCGACACGAGA
CTGATTCTCTCAAGATCCAGATGCTCGTCACCGATGCCACGAATTACCTC
GAGACGTTGCAGGGCACCACGGGTGAAACAGGAACCTCCATCGGCGGCGG
GGAGGGGCGTTGATGGTTCGTGGCTAGACATTGACGACCCCGAGGACAAG
AGAGGGAGGGTTGGGGAGGGTTTTCCTTGGCAAAGGTAGTAATTTCTGTT
CGGTCTGGGGGGCTGCAATCGTCAAGATGAGTGGATCCTTTGAATATTTG
GCGCGGGAATCTCGCCGCCGACAGTGCCTCTTTTGCCTCCCGCATGATTG
AGCTTGAAGGGGGCCCGTTTGTTCTACTCTGAGCGGCCGTGCTTTGGTGA
TTTCTTGCGAACGAAAACTGGCGAGCGTTATTCGAATTAAAGCGCTGCGA
AGTTCAGCCAAAAAGGGTCAAGACGTGGATTTCACGCGACCACCGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig75:21751..23247-

>mRNA_P-fluviatile_contig75.14000.1 ID=mRNA_P-fluviatile_contig75.14000.1|Name=mRNA_P-fluviatile_contig75.14000.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=462bp|location=Sequence derived from alignment at P-fluviatile_contig75:21751..23247- (Porterinema fluviatile SAG_2381)
ATGCACCGCACCCGAGTGCTTGGCCTCTATCGTGGCATACTACAGATGCA
CCGCACCCGAGTGCTTGGCCTCTATCGTGGCATACTACAGCGGGCCCGAG
CCATCGAAGACAAGGACGTGGCCGCAGAGGCTAGAAGACAATTTAAGTCT
TTCCGACACGAGACTGATTCTCTCAAGATCCAGATGCTCGTCACCGATGC
CACGAATTACCTCGAGACGTTGCAGGGCACCACGGGTGAAACAGGAACCT
CCATCGGCGGCGGGGAGGGGCGTTGACGGGCCCGAGCCATCGAAGACAAG
GACGTGGCCGCAGAGGCTAGAAGACAATTTAAGTCTTTCCGACACGAGAC
TGATTCTCTCAAGATCCAGATGCTCGTCACCGATGCCACGAATTACCTCG
AGACGTTGCAGGGCACCACGGGTGAAACAGGAACCTCCATCGGCGGCGGG
GAGGGGCGTTGA
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