mRNA_P-fluviatile_contig74.13972.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig74.13972.1 vs. uniprot
Match: A0A6H5JM22_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM22_9PHAE) HSP 1 Score: 254 bits (649), Expect = 1.440e-66 Identity = 597/991 (60.24%), Postives = 663/991 (66.90%), Query Frame = 2
Query: 98 PWWSGAFVMPALPQRCCSGAALSQRPLQQR--LKCRRRRRTSSDGSSGRGDPLHAMPPPRSCSAP--------NAEPPRPGDNGTAQRLRFAARWTASPNGGALSAAAAPQALSDPPPGATKVRCTA--------EETRDGTCGSSNSSVGGSSSGLGSRGNRNSTDGCRCGDGDAARMGG---EVRDVSALGRSKGRQQGFLVEEAERTAGGGGAKLADEAELGTVRDGYSRQLIVGLAKLARAGLWKASFKVLRVEQALVARKRAAAREDGEVYPNSSWLIVEALAYNTILAALSKAGKWQEAVLLMKEMETRGVRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXKMRKTGIDPDEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAKASEAPWDPWMDETKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPTSVPTVEETGGLTFPVLDLEGTTAASAAXXXXXXXXXXXXXXXXKLLAASSRVVAAEGRNGGTSAGTCSGVGSVVGATPVAFVVETPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSGGPSASLQRRTREGVRWPPRPDAYSFHTVIKAFAAAGMWQDAVAMLEGMADEMQRHLRGEEEVL-----MHGPAFSAKGVGRWPVDVDRFRRVFQLEIRNNEIVGHERGRMLSSGPSGPSPEVALRVKAMDVLAEIEREDKEARLRRQAL 2992
PW GAFV P +P S AALSQ+ LKCRRRR S+G + LHA+P PRSCS P + +P G ++ R AAR + ++AAPQ L+DP A +C E G+ G V G + N ++ GD D M G E + R +G EE A L EAE+G+ D YSRQLI GL KLAR GLWKASFKVLRVEQAL ARK +AA+ +GE Y +SSW +VE AYNTILAALS+AGKW+EAVLL+KEMETRG++RDA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXX KM+K GI P+EVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX M KA+E PWD + KPPTXXXXXXXXXXXXXXXXXXXXXXXXX EKKGVERTEG FQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDP +V T+E GGL FPVLD+ G A ++ AE R+ G++ G S PV +RRTREG WPPRPDA SFHTV+KA A GMW +AV +LE M +E +R LR +E L +WPV++DRFR VF++E++NNE+VGHE+ S SP+V+LR KAMD+L +ERE+KEARL+RQ L
Sbjct: 12 PWRGGAFVAPVVP----SSAALSQQHGDGANWLKCRRRR----PRSNGIAERLHAVPSPRSCSTPASISLSQASIQP------GRSRARRPAARAGGNARKRGSHSSAAPQTLADP---AVHDQCGGGIAAGGGIEVDMFGSSGGMFGDVAGDVVNM--ERNVSAAAAGALGDDDHVEMMGTPPEEQHXXXXXXXXXRLKGTEEEEV--------ASL--EAEIGSGMDAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKISAAQANGEEY-SSSWPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKAAEEPWDADVGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXXLEDMEKKGVERTEGAFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIE-CGGLLFPVLDING------ASTDLNIVVDGLGRKNGEVNVGKGGRAPAEARSEGSAVGLPSTXXXXXXXXXXXXXXXXPVK---------------------------------------------RRRTREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETXXXXXXXXXXXXXXXQWPVNIDRFRGVFEMELKNNEVVGHEQRGDWSKFEV--SPQVSLRAKAMDLLMVMEREEKEARLKRQTL 918
BLAST of mRNA_P-fluviatile_contig74.13972.1 vs. uniprot
Match: D7FWB8_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB8_ECTSI) HSP 1 Score: 221 bits (564), Expect = 5.450e-57 Identity = 531/763 (69.59%), Postives = 568/763 (74.44%), Query Frame = 2
Query: 719 DGYSRQLIVGLAKLARAGLWKASFKVLRVEQALVARKRAAAREDGEVYPNSSWLIVEALAYNTILAALSKAGKWQEAVLLMKEMETRGVRRDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXKMRKTGIDPDEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMAKASEAPWDPWMDETKPPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPTSVPTVEETGGLTFPVLDLEGTTAASAAXXXXXXXXXXXXXXXXKLLAASSRVVAAEGRNGGTSAGTCSGVGSVVGATPVAFVVETPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSGGPSASLQRRTREGVRWPPRPDAYSFHTVIKAFAAAGMWQDAVAMLEGMADEMQRHLRGEEEVLM-----HGPAFSAKGVGRWPVDVDRFRRVFQLEIRNNEIVGHERGRMLSSGPSGPSPEVALRVKAMDVLAEIEREDKEARLRRQAL 2992
D YSRQLI GL KLAR GLWKASFKVLRVEQAL ARK +AA+ +GE Y SSWLIVE AYNTILAALS+AGKW+EAVLL+KEMETRG++RDA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXX KM+K G+ P+EVS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX M KASE PWD M KPPTXXXXXXXXXXXXXXXXXXXXXXXX EKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDP +V T+E G L FPVLD+ G + L + VV GR G VG T XXXX TREG WPPRPDA SFHTV+KA A GMW +AV +LE M +E +R LR +E L G +WPV++DRFR VF++E++NNE+VGHE+ S SP+V+LR KAMD+L +ERE+KEARL+RQ L
Sbjct: 2 DAYSRQLIGGLTKLARNGLWKASFKVLRVEQALNARKVSAAQANGEEYL-SSWLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGVKPNEVSYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKIFVGMVKASEVPWDADMGHPKPPTXXXXXXXXXXXXXXXXXXXXXXXXFLEDMEKKGVERTEGVFQATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDFMRDPNNVATIE-CGDLLFPVLDINGASTD---------------------LKDLTVVVDGLGRKNGEVTVDDRAVGLPSTMTTXXXXXXXXXXXXXX----------------------------------------XXXXTREGGSWPPRPDAVSFHTVMKALATEGMWHEAVELLEEMVEERRRFLRSDEAFLETTVGGRGXXXXXXXXXQWPVNIDRFRGVFEMELKNNEVVGHEQRGGWSKFEV--SPQVSLRAKAMDLLMVMEREEKEARLKRQTL 699 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig74.13972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig74.13972.1 >prot_P-fluviatile_contig74.13972.1 ID=prot_P-fluviatile_contig74.13972.1|Name=mRNA_P-fluviatile_contig74.13972.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=987bp MAGETTTSTGRIIKPWWSGAFVMPALPQRCCSGAALSQRPLQQRLKCRRRback to top mRNA from alignment at P-fluviatile_contig74:326609..340035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig74.13972.1 ID=mRNA_P-fluviatile_contig74.13972.1|Name=mRNA_P-fluviatile_contig74.13972.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=13427bp|location=Sequence derived from alignment at P-fluviatile_contig74:326609..340035+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig74:326609..340035+ >mRNA_P-fluviatile_contig74.13972.1 ID=mRNA_P-fluviatile_contig74.13972.1|Name=mRNA_P-fluviatile_contig74.13972.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=5922bp|location=Sequence derived from alignment at P-fluviatile_contig74:326609..340035+ (Porterinema fluviatile SAG_2381)back to top |