mRNA_P-fluviatile_contig72.13882.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig72.13882.1
Unique NamemRNA_P-fluviatile_contig72.13882.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig72.13882.1 vs. uniprot
Match: A0A6H5KJ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ01_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 3.320e-52
Identity = 110/218 (50.46%), Postives = 139/218 (63.76%), Query Frame = 1 
Query:   97 VRLILAPL-LLSIAAA----YRQGDIVGMTYNYRSLRA-EEPQESPWEGVLRSQMPRYGRPGKVNFKPGAALPPNTPQHSRDAEEDGLAVAFAFAEERFVLRRVSTRQEGGTGSQKRGRLSKVVITFACAAGDIVTVRSDPVYSDG-------GGVAAEGGXXXXXGTGA---LGFEIEYRWDWLPEEDEQTGVWLVLAASLVLTAVLAADACNGTVE 702
            V L+LA L   SIAAA     R GDIV M+Y  +   + EE +E+PWE  LRSQMPR+GRP  V FKP   LP     HS  A+ D +AV FAF +E+FVLRRV  R+EG +G+++  RL ++V+TFACA G+IV +RSDPVY+         GG++   G      T      GF++EYRWD LPEED Q G+W +L ASLV+TAVLA D CN T E
Sbjct:   11 VELLLAHLSATSIAAAAAAVLRPGDIVSMSYRSKVTGSVEEKREAPWEEALRSQMPRFGRPDTVQFKPN--LPDGGTSHS--ADRDQVAVVFAFFQEQFVLRRVMLREEG-SGNEEGRRLKRLVVTFACAGGEIVKIRSDPVYACRTVVGPLFGGLSKANGDTAATATAGGEDPGFQVEYRWDHLPEEDAQAGLWFLLFASLVVTAVLAVDVCNSTAE 223
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig72.13882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ01_9PHAE3.320e-5250.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig72contigP-fluviatile_contig72:476992..479292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size798
Cds size753
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig72.13882.1prot_P-fluviatile_contig72.13882.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig72 476992..479247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.7749488-CDS-P-fluviatile_contig72:476991..4772841622817161.7749488-CDS-P-fluviatile_contig72:476991..477284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 476992..477284 -
1693571327.4575334-CDS-P-fluviatile_contig72:476991..4772841693571327.4575334-CDS-P-fluviatile_contig72:476991..477284Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 476992..477284 -
1622817161.7895248-CDS-P-fluviatile_contig72:477767..4779251622817161.7895248-CDS-P-fluviatile_contig72:477767..477925Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 477768..477925 -
1693571327.4686177-CDS-P-fluviatile_contig72:477767..4779251693571327.4686177-CDS-P-fluviatile_contig72:477767..477925Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 477768..477925 -
1622817161.8040373-CDS-P-fluviatile_contig72:478396..4785421622817161.8040373-CDS-P-fluviatile_contig72:478396..478542Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 478397..478542 -
1693571327.4773605-CDS-P-fluviatile_contig72:478396..4785421693571327.4773605-CDS-P-fluviatile_contig72:478396..478542Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 478397..478542 -
1622817161.8169315-CDS-P-fluviatile_contig72:479091..4792471622817161.8169315-CDS-P-fluviatile_contig72:479091..479247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 479092..479247 -
1693571327.48649-CDS-P-fluviatile_contig72:479091..4792471693571327.48649-CDS-P-fluviatile_contig72:479091..479247Porterinema fluviatile SAG_2381CDSP-fluviatile_contig72 479092..479247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817161.8337908-UTR-P-fluviatile_contig72:479247..4792921622817161.8337908-UTR-P-fluviatile_contig72:479247..479292Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 479248..479292 -
1693571327.5038042-UTR-P-fluviatile_contig72:479247..4792921693571327.5038042-UTR-P-fluviatile_contig72:479247..479292Porterinema fluviatile SAG_2381UTRP-fluviatile_contig72 479248..479292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig72.13882.1

>prot_P-fluviatile_contig72.13882.1 ID=prot_P-fluviatile_contig72.13882.1|Name=mRNA_P-fluviatile_contig72.13882.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=251bp
MFMICGCCFSRLWSKKAVRLILAPLLLSIAAAYRQGDIVGMTYNYRSLRA
EEPQESPWEGVLRSQMPRYGRPGKVNFKPGAALPPNTPQHSRDAEEDGLA
VAFAFAEERFVLRRVSTRQEGGTGSQKRGRLSKVVITFACAAGDIVTVRS
DPVYSDGGGVAAEGGGGEGGGTGALGFEIEYRWDWLPEEDEQTGVWLVLA
ASLVLTAVLAADACNGTVERETETSGPRVRGLSPQQLPPPYAHRRGSGDG
K
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mRNA from alignment at P-fluviatile_contig72:476992..479292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig72.13882.1 ID=mRNA_P-fluviatile_contig72.13882.1|Name=mRNA_P-fluviatile_contig72.13882.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2301bp|location=Sequence derived from alignment at P-fluviatile_contig72:476992..479292- (Porterinema fluviatile SAG_2381)
ACGTTACCTCCGTTGTAGCCCCACACCAGTTTGCCCAATACGGATATGTT
CATGATTTGCGGGTGCTGTTTTTCCAGACTATGGTCCAAAAAAGCAGTCA
GATTAATCCTGGCGCCACTTCTGCTGTCCATAGCGGCGGCATATAGGCAA
GGAGATATCGTTGGGATGACATACAATTACAGGAGCTTGAGGGCGGAAGA
GGTGAGTTGGGAACTCGACCCGGGGCGAGCGCATCGATCGAAACGTATTC
AGTGCACGTGAAAGGAGTGCACGTGAAAAAATGGGGCAGGTCAGGAGGTC
ATGCGTGGTAGGTCCTTGGATTCTTGATGTTGATGCCTTTATGACTGGCC
GTTGCGAAGTCGTCGTATCGAAGGGGAGGTTCGGCGGCGTATTTGGCCAC
GCGCCAAGGATACAGAGATGCCAACACGCCACACTTGATGCAAAAAGGAA
GAGTGCTTTAAGAGTGCAAAATACAACCAAGAGATACCGTCGTTCTTGGC
TATGTACAGGTGCGGAGAAACTCAGCGTTTCCATTCTCAAGCCATGACCG
GGGTAGTCTGGGGTGTTGGCTGCGACAATATCTGCAGCACATATTTGCTT
CGTACACTTCTAGCATAACTGGGTACCAGGTACATTTTTCCTACATGGAA
GGAAAAATCGAAAGAAACGAGCAAGCCATCTTCTCTCCCCGCCGCGACCC
CACACCGCGACCATTGCGTGCGATTGCTGGCTGCGCGCTCACGCGTACAG
CCACAAGAAAGCCCGTGGGAGGGGGTACTCAGGTCGCAAATGCCCCGCTA
CGGGCGGCCCGGAAAGGTGAACTTCAAGCCAGGAGCTGCCCTGCCGCCAA
ATACCCCCCAGCATTCCCGGGATGCGGAGGAGGACGGGCTGGCTGTGTGA
GTTTTTGAGTTTCGAGAATTTCTTGCGTAATTTTTTGTATTTTTGTCCCG
ACGATTTATCATCTTCGACCACTGCTACACAACGCCGACGACTTATCGAC
GGCACCCGCCGCATATGCTTGATTCCAGGGTAGACGGCTTACCTGCCACC
GCGCGATTTACAGACCCATGTCCAATCCATCAGAGTCTGTCGGTCCTTCT
GGTGTTCTGAAAAATGGACTTTGCCGAAGCAGCTCATTCGTTTGTTTGTT
TTGCTTCGCACGATTACGTTTCACGCTGCCCCCCCCCGATCTTTCCCCAA
CACACTCGACCCGACCACGCGAAGGGTTAACGTGGTGACACAAAATTTTT
CACAAAAAATAATGCTCCATGAGCAAAAAATTCATTCTACCCCGGGCTCC
TCCCCACGCGCGTATACTTGCTTGCACGTGCACCCTCCGTTATTGTCTTT
TCCTAAACAAAATCAAGGGCGTTCGCTTTTGCTGAGGAGCGGTTCGTTTT
GCGCCGTGTGAGCACGAGACAGGAGGGCGGCACCGGCAGCCAGAAGCGCG
GTCGCCTCAGCAAGGTCGTCATCACTTTTGCCTGCGCTGCAGGGGATATC
GTCACGGTTAGATCTGACCCCGTGTGTGAGTTCGCGGTCGCATGACCGAA
TCCTGGCGCGACTTTTCTGACACGATTTAATAAAGGGGGTTCGGCATTGC
AGAATCTGCAGGAGCGAAAGAGCGGAGAATTTCAACCCACCCTTCTCTTT
GTTTTCAGCCGTTCATGGTTGCCACTTCAACCGAGAAACAAGGAGTAGCA
GCCATATTGGTGGTATGAATGAAAACAGCTTGCATTTCTCGGCAAAACTC
CCTTGTTTTCCTGCCCGCCAGCCCATCCGCGCGTTCATCTTCTCATCAGC
GGCCCGCCGCTTTGTTTCCTCGTTCCTCCCCTCGACGTTGCTGCCGCTGC
CGCCGCTCGATGTTCGTCTTATGCCATCGCTGCTGTCGGTCGGTTAACCG
ATCGATCGATGATCGATGTACAAAATCAAGCAGCCGAAAAATCGTGTCCG
CTGTTTGCTGGCGTCTCGTCCGCTTTCCTTTGTGCTTCTCTCAACATATA
ATTTACAGACAGCGACGGTGGTGGGGTCGCTGCCGAAGGAGGAGGAGGAG
AAGGAGGAGGGACAGGGGCCCTGGGGTTTGAAATCGAGTACCGGTGGGAC
TGGCTCCCCGAGGAGGACGAGCAGACGGGCGTGTGGCTCGTGCTCGCCGC
GTCCCTGGTGCTCACGGCCGTTCTCGCCGCGGACGCTTGCAACGGCACCG
TGGAACGCGAGACCGAGACTAGCGGCCCTCGGGTCCGAGGGCTATCGCCA
CAACAACTGCCGCCGCCTTACGCCCACCGGAGGGGGAGCGGGGACGGGAA
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig72:476992..479292-

>mRNA_P-fluviatile_contig72.13882.1 ID=mRNA_P-fluviatile_contig72.13882.1|Name=mRNA_P-fluviatile_contig72.13882.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1506bp|location=Sequence derived from alignment at P-fluviatile_contig72:476992..479292- (Porterinema fluviatile SAG_2381)
ATGTTCATGATTTGCGGGTGCTGTTTTTCCAGACTATGGTCCAAAAAAGC
AGTCAGATTAATCCTGGCGCCACTTCTGCTGTCCATAGCGGCGGCATATA
GGCAAGGAGATATCGTTGGGATGACATACAATTACAGGAGCTTGAGGGCG
GAAGAGATGTTCATGATTTGCGGGTGCTGTTTTTCCAGACTATGGTCCAA
AAAAGCAGTCAGATTAATCCTGGCGCCACTTCTGCTGTCCATAGCGGCGG
CATATAGGCAAGGAGATATCGTTGGGATGACATACAATTACAGGAGCTTG
AGGGCGGAAGAGCCACAAGAAAGCCCGTGGGAGGGGGTACTCAGGTCGCA
AATGCCCCGCTACGGGCGGCCCGGAAAGGTGAACTTCAAGCCAGGAGCTG
CCCTGCCGCCAAATACCCCCCAGCATTCCCGGGATGCGGAGGAGGACGGG
CTGGCTGTCCACAAGAAAGCCCGTGGGAGGGGGTACTCAGGTCGCAAATG
CCCCGCTACGGGCGGCCCGGAAAGGTGAACTTCAAGCCAGGAGCTGCCCT
GCCGCCAAATACCCCCCAGCATTCCCGGGATGCGGAGGAGGACGGGCTGG
CTGTGGCGTTCGCTTTTGCTGAGGAGCGGTTCGTTTTGCGCCGTGTGAGC
ACGAGACAGGAGGGCGGCACCGGCAGCCAGAAGCGCGGTCGCCTCAGCAA
GGTCGTCATCACTTTTGCCTGCGCTGCAGGGGATATCGTCACGGTTAGAT
CTGACCCCGTGTGGCGTTCGCTTTTGCTGAGGAGCGGTTCGTTTTGCGCC
GTGTGAGCACGAGACAGGAGGGCGGCACCGGCAGCCAGAAGCGCGGTCGC
CTCAGCAAGGTCGTCATCACTTTTGCCTGCGCTGCAGGGGATATCGTCAC
GGTTAGATCTGACCCCGTGTACAGCGACGGTGGTGGGGTCGCTGCCGAAG
GAGGAGGAGGAGAAGGAGGAGGGACAGGGGCCCTGGGGTTTGAAATCGAG
TACCGGTGGGACTGGCTCCCCGAGGAGGACGAGCAGACGGGCGTGTGGCT
CGTGCTCGCCGCGTCCCTGGTGCTCACGGCCGTTCTCGCCGCGGACGCTT
GCAACGGCACCGTGGAACGCGAGACCGAGACTAGCGGCCCTCGGGTCCGA
GGGCTATCGCCACAACAACTGCCGCCGCCTTACGCCCACCGGAGGGGGAG
CGGGGACGGGAAGACAGCGACGGTGGTGGGGTCGCTGCCGAAGGAGGAGG
AGGAGAAGGAGGAGGGACAGGGGCCCTGGGGTTTGAAATCGAGTACCGGT
GGGACTGGCTCCCCGAGGAGGACGAGCAGACGGGCGTGTGGCTCGTGCTC
GCCGCGTCCCTGGTGCTCACGGCCGTTCTCGCCGCGGACGCTTGCAACGG
CACCGTGGAACGCGAGACCGAGACTAGCGGCCCTCGGGTCCGAGGGCTAT
CGCCACAACAACTGCCGCCGCCTTACGCCCACCGGAGGGGGAGCGGGGAC
GGGAAG
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