mRNA_P-fluviatile_contig7.13560.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13560.1
Unique NamemRNA_P-fluviatile_contig7.13560.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13560.1 vs. uniprot
Match: A0A6H5L594_9PHAE (Ribosomal_L23eN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L594_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.980e-12
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 ASKAKQAAKNVRQGSGKRRAKVRTSVHFYRPKTLTKARSPKYTTKAVQR 147
            ASKAK AAKNV +GSGKRRAKVRTSVHF+RPKTLT AR PKY  KAV R
Sbjct:    7 ASKAKLAAKNVLKGSGKRRAKVRTSVHFHRPKTLTHARKPKYPAKAVPR 55
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BLAST of mRNA_P-fluviatile_contig7.13560.1 vs. uniprot
Match: A0A835Z6Z2_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.800e-6
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 ASKAKQAAKNVRQGSGKRRAKVRTSVHFYRPKTLTKARSPKYTTKAV 141
            A+KAK AAK V +G+G ++ KVRT VHFYRPKTLT  R PKY  K+ 
Sbjct:   11 ATKAKAAAKAVTKGTGIKKTKVRTKVHFYRPKTLTHDRKPKYALKST 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L594_9PHAE4.980e-1281.63Ribosomal_L23eN domain-containing protein n=2 Tax=... [more]
A0A835Z6Z2_9STRA7.800e-661.70Ribosomal protein L23/L15e core domain-containing ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1698461..1700328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D7FP15
Preferred nameRPL23A
KEGG koko:K02893,ko:K07921,ko:K19931
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070180,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0089@1,KOG1751@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04031,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L23
Ec32 orthologEc-05_001780.1
Exons2
Model size993
Cds size261
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13560.1prot_P-fluviatile_contig7.13560.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1699193..1700328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817125.3461711-UTR-P-fluviatile_contig7:1698460..16991921622817125.3461711-UTR-P-fluviatile_contig7:1698460..1699192Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1698461..1699192 -
1693571224.6429622-UTR-P-fluviatile_contig7:1698460..16991921693571224.6429622-UTR-P-fluviatile_contig7:1698460..1699192Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1698461..1699192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817125.3581433-CDS-P-fluviatile_contig7:1699192..16993641622817125.3581433-CDS-P-fluviatile_contig7:1699192..1699364Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1699193..1699364 -
1693571224.6589863-CDS-P-fluviatile_contig7:1699192..16993641693571224.6589863-CDS-P-fluviatile_contig7:1699192..1699364Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1699193..1699364 -
1622817125.3700614-CDS-P-fluviatile_contig7:1700239..17003281622817125.3700614-CDS-P-fluviatile_contig7:1700239..1700328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1700240..1700328 -
1693571224.6753364-CDS-P-fluviatile_contig7:1700239..17003281693571224.6753364-CDS-P-fluviatile_contig7:1700239..1700328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1700240..1700328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13560.1

>prot_P-fluviatile_contig7.13560.1 ID=prot_P-fluviatile_contig7.13560.1|Name=mRNA_P-fluviatile_contig7.13560.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=87bp
ASKAKQAAKNVRQGSGKRRAKVRTSVHFYRPKTLTKARSPKYTTKAVQRV
SGNRHGLTYWFSSRDEDRSRDRARDPDEACSRRSVF*
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mRNA from alignment at P-fluviatile_contig7:1698461..1700328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13560.1 ID=mRNA_P-fluviatile_contig7.13560.1|Name=mRNA_P-fluviatile_contig7.13560.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1868bp|location=Sequence derived from alignment at P-fluviatile_contig7:1698461..1700328- (Porterinema fluviatile SAG_2381)
GCCTCGAAGGCCAAGCAGGCGGCTAAAAATGTTCGCCAGGGCTCTGGAAA
GCGACGGGCGAAGGTCCGAACCAGCGTGCACTTCTACAGGTGAGATTCAT
CGTCGACGCACTTTTTTCATTTGTTTGGAGTTTCTTGATCTTCTTCTCCT
TCTTCTGCTGGTTGCTGCCTAATGCTTTTGTGTGTTATCCTGCGATCGAG
GAAGAATGGAGATGGACATGATCAACATTCTTGATGCTCGAGGTGTCCAT
CGCTGTTTCTCTTGCACAATTTCACTCTTGCGTCCTTCACTTGTGTTCCG
CTAGTAAAGCTACGACTTTTGTCTGAACACGTTTGCTGGTAGTCCAGCAA
AAATGAATGGATATTCAGAGGAGATTTCAATGTGCGCGACACTGCTGTTT
CAAGTAGGATCTACTCAGTGGTCCGTCCGGCATCGTGTGACCCCGGACCC
CAGGTTTTGACAACGAGATAGAGTAAATTAAACAAACGGTCGGTTATCGA
TCTGGACTTGATTCCTCAATAGCCGCAAGATTTTCAGCAAGAAATTCCCC
GGCCGGCTGACAATTTGACCGCTCCAGCATGCCCCCTTAGACAGACGGAT
AACCGCTCGCTTTATTTTGTACCCCATTCTACTCGAGAAGTTTCCATTCT
TGCCCTCTCCTTAGCAACAATCTGATACAACTCGAACGCTGTCGGGCAAC
CATATCGATCCTGTGGCTGTTCGCTTTCCCCCCGCGACTCTTATTTATCT
TGTCGTTTTTCCTCGCCGCGTCTGTCATGGGGCTGGGGGCGGTTCGATTA
CGTTGTGGCCTGCTTGGAACGCCGGAACGTCGGGTGATCGTGCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGTCGCCGCGCCTCTCTCTTGGTGGGGTGGG
GATGAAACCCATCGCATCGTGTTTCCTTGTTCAATGAAATTCGAACGGCG
ACCACGAACACCAGGCCCAAGACTCTCACGAAAGCCCGTTCGCCCAAGTA
CACCACCAAGGCCGTCCAGAGGGTAAGCGGAAACCGGCACGGGTTGACTT
ATTGGTTCTCCTCTCGAGACGAGGATCGCTCCCGCGATCGCGCCCGCGAT
CCAGACGAAGCTTGTTCTCGTCGTTCCGTCTTTTAGTTTGTGCTTTTAGG
CGTCAATGGGCAGCTCGAGGTGTGCAAGTCGCCGATGGTTGATCCCTTGT
GTGTTGTGTTTCTTGATGAGGCGTGATCGGTTTCGGGGATTTTTCTGCGT
GTAAATAGGGGCGTTTTCCGCCTTTAGCAAGAGGGATGCCCTTGAGAACC
CAGGTAAGGGTCAAATGACAACTGTGTATTCTTCCCGGGACATCGTTTTA
GGGACGTCCAGAGTAACAACCAGCCCCGAATAGTGCCAAGCAGTGTAGTG
CCGTAGCGCTCCTGGGGTGTTTTCGACGCTCGTTTCCTTTGCGCATGCCT
GGGACGGCCAAAGCGCATTGTCAGATCTTTGCTAGGGCGTGCTTCAGTGT
GGTGCCTGACGCAAGCCTGCAGATCGGACGGCTTGGGGCGCAGTTTTTTT
TGCGTCTGTTCACCCGCACGCGTTTCGCATCAGGTTGTTCGGTCATTCTC
GCTTGTGCAACGGTTGTTCGGTCGTTCGACGCTTCGTTGGGTGTATTGTG
TGTGGGAATGCGGTTTTTCCCAACATTTTCTCTTCGTTTTTTGTTCAGAC
TGAAATTCGATGGAAAAAGTACTCGGCACGCTATTTGAACGCTTGAGGAT
TCTGTGAATTTTGCTGGGTATTATGCTGGGACATCGTGTCGAGGGAGCGT
GTTTCAACTCAAGCATGGTGTGGAATGTCTGCGGCCCTGGCGTTCACCTG
TGGCATATTAGTGTCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1698461..1700328-

>mRNA_P-fluviatile_contig7.13560.1 ID=mRNA_P-fluviatile_contig7.13560.1|Name=mRNA_P-fluviatile_contig7.13560.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=522bp|location=Sequence derived from alignment at P-fluviatile_contig7:1698461..1700328- (Porterinema fluviatile SAG_2381)
GCCTCGAAGGCCAAGCAGGCGGCTAAAAATGTTCGCCAGGGCTCTGGAAA
GCGACGGGCGAAGGTCCGAACCAGCGTGCACTTCTACAGGCCTCGAAGGC
CAAGCAGGCGGCTAAAAATGTTCGCCAGGGCTCTGGAAAGCGACGGGCGA
AGGTCCGAACCAGCGTGCACTTCTACAGGCCCAAGACTCTCACGAAAGCC
CGTTCGCCCAAGTACACCACCAAGGCCGTCCAGAGGGTAAGCGGAAACCG
GCACGGGTTGACTTATTGGTTCTCCTCTCGAGACGAGGATCGCTCCCGCG
ATCGCGCCCGCGATCCAGACGAAGCTTGTTCTCGTCGTTCCGTCTTTTAG
GCCCAAGACTCTCACGAAAGCCCGTTCGCCCAAGTACACCACCAAGGCCG
TCCAGAGGGTAAGCGGAAACCGGCACGGGTTGACTTATTGGTTCTCCTCT
CGAGACGAGGATCGCTCCCGCGATCGCGCCCGCGATCCAGACGAAGCTTG
TTCTCGTCGTTCCGTCTTTTAG
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