mRNA_P-fluviatile_contig7.13536.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig7.13536.1
Unique NamemRNA_P-fluviatile_contig7.13536.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig7.13536.1 vs. uniprot
Match: Q8QNG6_ESV1K (EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG6_ESV1K)

HSP 1 Score: 95.1 bits (235), Expect = 9.630e-20
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = -3 
Query:  888 MENVFSIQKAKEQCDNDEEFMKEMISLFHDDLRECVGQLAKAFHDKNLRELKELSHRIKGQAATLAANDLFESSQSLEKSSTSGVYSEDEYNLLVSSINEFLRKT 1202
            ME V  ++ A E CDNDEEF+KEM+ L  DD+ +C+  LA+AF D +    +E++HR+KGQAA LAA DL   S+ +E ++  G  ++ EY  LV ++ EF+R T
Sbjct:    1 MEKVLCVKGALEMCDNDEEFLKEMVGLMRDDIMKCLSLLAEAFDDNDSSRTREVAHRVKGQAAMLAAKDLLLQSKKVEDAAKIGFCTKTEYLSLVLNMKEFVRCT 105
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BLAST of mRNA_P-fluviatile_contig7.13536.1 vs. uniprot
Match: D8LPE1_ECTSI (Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPE1_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.520e-19
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = -3 
Query:  888 MENVFSIQKAKEQCDNDEEFMKEMISLFHDDLRECVGQLAKAFHDKNLRELKELSHRIKGQAATLAANDLFESSQSLEKSSTSGVYSEDEYNLLVSSINEFLRKT 1202
            MENV  IQ+    CDNDE FMKEM+ L  +D+ EC+  LA+AF++ N    +E++HR+KGQAA++AA DL   S+ +E ++  G  ++ EY  LV S+ EF+R T
Sbjct:    1 MENVLCIQETVAMCDNDEIFMKEMVVLMRNDIVECLSLLAEAFNNNNPARTREVAHRVKGQAASMAAKDLMLHSKKVEDAAKIGFCTKTEYLSLVLSMKEFVRCT 105
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BLAST of mRNA_P-fluviatile_contig7.13536.1 vs. uniprot
Match: Q8QKV7_ESV1K (Histidine kinase n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV7_ESV1K)

HSP 1 Score: 88.2 bits (217), Expect = 2.380e-14
Identity = 47/134 (35.07%), Postives = 81/134 (60.45%), Query Frame = 1 
Query: 1351 EYIFHLTKKSDSSKFNQSKNFIVSEVFDTVESAFIPSAITTAFNLFDVSKDEFHELSRLFVIKNNVDLLIYSPLITRD--SREAFEANITRVYGYDIEITNLIDGEFVPSSINSINDSFYNMQYNMFWPIYYRY 1746
            E I+    KS S K+  +K  +++++ D + +A  PS +T  FN+F VS ++F   +  +  +N +DLLIYSPL++ +  +++ FE   + V+G+ + +T ++DGE  P  I + NDS      ++ WPIYYRY
Sbjct:   25 ESIYQTLVKSRSDKYELAKAVVITDISDLMVNAVTPSVLTVMFNVFQVSLEDFTLAAETYANRNEIDLLIYSPLVSPNGLTQQEFEEEASNVHGFGVVMTEIVDGELAP--ITNDNDS-----QSVSWPIYYRY 151
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BLAST of mRNA_P-fluviatile_contig7.13536.1 vs. uniprot
Match: A0A662CVD4_9BACT (HPt domain-containing protein n=2 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A662CVD4_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.540e-6
Identity = 23/63 (36.51%), Postives = 45/63 (71.43%), Query Frame = -3 
Query: 1005 VFSIQKAKEQCDNDEEFMKEMISLFHDDLRECVGQLAKAFHDKNLRELKELSHRIKGQAATLA 1193
            +F ++ A+E+   DE+F+KE++SL+ ++ +  + +L  A+  +N +E+KELSH +KG +A L+
Sbjct:   37 LFDLESARERTGGDEDFLKELLSLYEEEFKAKLPELKTAWQARNFKEIKELSHSLKGASANLS 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig7.13536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNG6_ESV1K9.630e-2045.71EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPE1_ECTSI2.520e-1946.67Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus s... [more]
Q8QKV7_ESV1K2.380e-1435.07Histidine kinase n=1 Tax=Ectocarpus siliculosus vi... [more]
A0A662CVD4_9BACT5.540e-636.51HPt domain-containing protein n=2 Tax=Candidatus A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig7contigP-fluviatile_contig7:1335520..1337941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size2083
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig7.13536.1prot_P-fluviatile_contig7.13536.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig7 1337122..1337664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817122.288861-UTR-P-fluviatile_contig7:1335519..13358631622817122.288861-UTR-P-fluviatile_contig7:1335519..1335863Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1335520..1335863 +
1693571215.7744343-UTR-P-fluviatile_contig7:1335519..13358631693571215.7744343-UTR-P-fluviatile_contig7:1335519..1335863Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1335520..1335863 +
1622817122.2997227-UTR-P-fluviatile_contig7:1336202..13371211622817122.2997227-UTR-P-fluviatile_contig7:1336202..1337121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1336203..1337121 +
1693571215.7819545-UTR-P-fluviatile_contig7:1336202..13371211693571215.7819545-UTR-P-fluviatile_contig7:1336202..1337121Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1336203..1337121 +
1622817122.3288739-UTR-P-fluviatile_contig7:1337664..13379411622817122.3288739-UTR-P-fluviatile_contig7:1337664..1337941Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1337665..1337941 +
1693571215.8032222-UTR-P-fluviatile_contig7:1337664..13379411693571215.8032222-UTR-P-fluviatile_contig7:1337664..1337941Porterinema fluviatile SAG_2381UTRP-fluviatile_contig7 1337665..1337941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817122.3165805-CDS-P-fluviatile_contig7:1337121..13376641622817122.3165805-CDS-P-fluviatile_contig7:1337121..1337664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1337122..1337664 +
1693571215.7898977-CDS-P-fluviatile_contig7:1337121..13376641693571215.7898977-CDS-P-fluviatile_contig7:1337121..1337664Porterinema fluviatile SAG_2381CDSP-fluviatile_contig7 1337122..1337664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig7.13536.1

>prot_P-fluviatile_contig7.13536.1 ID=prot_P-fluviatile_contig7.13536.1|Name=mRNA_P-fluviatile_contig7.13536.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=181bp
MKRQMPNRKIWPYSVAIFTLLSAISIGSVEYIFHLTKKSDSSKFNQSKNF
IVSEVFDTVESAFIPSAITTAFNLFDVSKDEFHELSRLFVIKNNVDLLIY
SPLITRDSREAFEANITRVYGYDIEITNLIDGEFVPSSINSINDSFYNMQ
YNMFWPIYYRYQNLGELQKDWDWWWQMPAL*
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mRNA from alignment at P-fluviatile_contig7:1335520..1337941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig7.13536.1 ID=mRNA_P-fluviatile_contig7.13536.1|Name=mRNA_P-fluviatile_contig7.13536.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2422bp|location=Sequence derived from alignment at P-fluviatile_contig7:1335520..1337941+ (Porterinema fluviatile SAG_2381)
TCCACCCTGAAGATCAGAATGTCCCCATAGTGAACAATGGCGCCCTTCTT
ATGTCTTTGTTCGGAATGTATTTTACGAAAGATATTCGTTATTTGGTTTC
GGACAACGTGCCTGCGCTTTTTACATCCATACGACCCCAGCTTCCCGGAT
TCTGTGTCATGTACTCGAAAACGTCTTTATTAGATGCCATCATATCGACA
ATCGACTTCTTGAGTATGATTCTAGAGTCTCCGACAGTGGAACGCAGCGC
GAGTAGTTCTTGGCGCAGGCTTTCCGAAACAACCAATGAGGATGCTGTTC
CAAGGGAAATCCTGAGCAACTCGTCCACCCTGAAAATCAGAATGTCCCCA
TAGTGAACAATGGCGCCCTTCTTATGTCTTGTTCGGAATGTATTTTACGA
AAGATATTCGTTATTTGGTTTCGGACAACGTGCCTGCGCTTTTTTACATC
CATACGACCCCAGCTTCCCGGATTCTGTGTCATGTACTCGAAAACGTCTT
TATTAGATGCCATCATATCGACAATCGACTTCTTGAGTTCATGGTTTCAC
TTTGCGAAAGTATTTATTTTCCAGTCCAATTGTGGCATACGACCTTTTTA
TTTGATTCGGAAGGTTTAGAGACCAATGGGGACACTCAACCTAGCTTGGT
TATACGGCGTTAATGTTGTCAATTGTGGATTTCGGATGGTTTAGAGACCC
TACTTATAGGGGATACTCAACCTGGTTTGGCAAATGTGACATACAACCTT
TTATTTGATTCGGATGGATTAGAGACCAATGGGGACACTCAACCTAGCTT
GGTTATACGGCGTTAATGTTGTCAATTGTGGATTTCGGATGGTTTAGAGA
CCCTACTTATTGGGGATACTCAACCTGGTTTGGCAAATGTGACATACAAC
CTTTTATTTGATTCGGATGGTTTAGAGACCAATGGGGACACTCGACCTAG
CCTTGGTGATAGGCGTTGTGTGCATTGACCATTTTATTTGATTCGGATGG
CTCAGAGACCAATGGCATAGTTTAATCAGGAGTAATAACGAATAACGAAT
AACGAATAACGACACATTAAACACAAAGAAGTCGCCATTGTGCCCCGAGG
GATAACTCTACTCCCGGTGATTTGTAATGCGAGTTTACTCTCTTACAAAT
CACCAACTTCGGGCTTTAAAAAAAAATTTCCGGGTTGGCTCAATGATTTG
ATATGTAATTACTCGAGTAAAAATGAAGTCTTTCGCAAGAATTCATTGAT
GCTCGATACCAAGAGATTGTATTCATCTTCCGAGTACACTCCTGATGTGG
AAGACTTTTCAAGTGACTGTGAACTCTCGAAAAGATCATTTGCTGCTAGA
GTGGCGGCCTGACCTTTGATGCGATGAGATAATTCTTTGAGTTCCCTCAA
GTTCTTGTCATGAAAAGCTTTGGCCAATTGCCCAACACATTCTCGAAGAT
CATCATGGAATAGACTGATCATTTCTTTCATGAATTCTTCATCATTATCA
CATTGCTCTTTGGCTTTTTGGATCGAGAAAACGTTTTCCATAATTTTATT
TGGAAGCCAACATAAAAAGTCGTCGTACTTTTAATCTATCGTGAGTATAC
AAATGAAACGACAAATGCCAAACAGAAAAATTTGGCCATATTCCGTTGCC
ATATTTACCCTACTTTCCGCGATAAGTATTGGCTCGGTGGAGTATATTTT
CCACTTGACAAAAAAATCAGACTCGTCGAAGTTTAATCAGTCAAAAAACT
TTATCGTTTCAGAAGTTTTCGACACAGTAGAGTCAGCATTCATTCCATCG
GCAATAACTACAGCGTTCAACTTATTTGATGTTAGCAAAGATGAATTCCA
TGAGCTTTCCAGGTTATTCGTAATCAAAAACAATGTGGATTTGTTGATCT
ATAGTCCACTTATAACACGAGATTCGAGGGAAGCGTTCGAGGCAAATATT
ACACGTGTATATGGGTATGATATTGAAATAACCAATCTCATTGACGGTGA
GTTCGTCCCCTCCTCGATAAACTCGATAAACGACAGTTTCTACAACATGC
AATACAACATGTTCTGGCCTATCTACTACAGATATCAAAATCTTGGAGAG
CTTCAGAAAGATTGGGATTGGTGGTGGCAAATGCCTGCTTTGTAAGAGGT
ATGACGTCGACATGGTCGATACGTCGCGAGGGAGTCCTATTTGTAAAAAT
TGTTGCATCAACATTTCTTAGAAAAACATCGTCCGGAAAACGGTTAGCTA
ACATCATGTGAAATCTCTGACGCTTGAATTCCAATTTCGCAAAAATGAAA
AAAAAATGGGACATAATTTCTCATAGGGGCACATTTCTCGTAAGGTCTAT
TCACTGCCACGACCACGACCGCGACCACGGCCACGACTGTCGAATATATC
AAATTCATGGTCAGAGTCAGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig7:1335520..1337941+

>mRNA_P-fluviatile_contig7.13536.1 ID=mRNA_P-fluviatile_contig7.13536.1|Name=mRNA_P-fluviatile_contig7.13536.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1086bp|location=Sequence derived from alignment at P-fluviatile_contig7:1335520..1337941+ (Porterinema fluviatile SAG_2381)
ATGAAACGACAAATGCCAAACAGAAAAATTTGGCCATATTCCGTTGCCAT
ATTTACCCTACTTTCCGCGATAAGTATTGGCTCGGTGGAGTATATTTTCC
ACTTGACAAAAAAATCAGACTCGTCGAAGTTTAATCAGTCAAAAAACTTT
ATCGTTTCAGAAGTTTTCGACACAGTAGAGTCAGCATTCATTCCATCGGC
AATAACTACAGCGTTCAACTTATTTGATGTTAGCAAAGATGAATTCCATG
AGCTTTCCAGGTTATTCGTAATCAAAAACAATGTGGATTTGTTGATCTAT
AGTCCACTTATAACACGAGATTCGAGGGAAGCGTTCGAGGCAAATATTAC
ACGTGTATATGGGTATGATATTGAAATAACCAATCTCATTGACGGTGAGT
TCGTCCCCTCCTCGATAAACTCGATAAACGACAGTTTCTACAACATGCAA
TACAACATGTTCTGGCCTATCTACTACAGATATCAAAATCTTGGAGAGCT
TCAGAAAGATTGGGATTGGTGGTGGCAAATGCCTGCTTTGTAAATGAAAC
GACAAATGCCAAACAGAAAAATTTGGCCATATTCCGTTGCCATATTTACC
CTACTTTCCGCGATAAGTATTGGCTCGGTGGAGTATATTTTCCACTTGAC
AAAAAAATCAGACTCGTCGAAGTTTAATCAGTCAAAAAACTTTATCGTTT
CAGAAGTTTTCGACACAGTAGAGTCAGCATTCATTCCATCGGCAATAACT
ACAGCGTTCAACTTATTTGATGTTAGCAAAGATGAATTCCATGAGCTTTC
CAGGTTATTCGTAATCAAAAACAATGTGGATTTGTTGATCTATAGTCCAC
TTATAACACGAGATTCGAGGGAAGCGTTCGAGGCAAATATTACACGTGTA
TATGGGTATGATATTGAAATAACCAATCTCATTGACGGTGAGTTCGTCCC
CTCCTCGATAAACTCGATAAACGACAGTTTCTACAACATGCAATACAACA
TGTTCTGGCCTATCTACTACAGATATCAAAATCTTGGAGAGCTTCAGAAA
GATTGGGATTGGTGGTGGCAAATGCCTGCTTTGTAA
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