mRNA_P-fluviatile_contig6.12426.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig6.12426.1
Unique NamemRNA_P-fluviatile_contig6.12426.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.260e-53
Identity = 87/103 (84.47%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    4 AFVRTAVRRPAAAAVASARRSMSGGDAAHAAEEMSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAER 312
            A VR AVRRPAAAA +SARRSMSG DAAHAAEEM+KWKK T GMGVLS+AVT LVLATEEHHHRDEDAP+PSYMKIRNKP+PW C+DC+LLDS CFAKCKAER
Sbjct:    4 ALVRAAVRRPAAAAASSARRSMSG-DAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A4D9D930_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D930_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.130e-19
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   73 GGDAAHAAEEMSKWKKTT-VGMGVLSVAVTGLVLATEEHHHRDE-DAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAERA 315
            GGD  H A+E+ KW+K + V  GV+ +     +L+   H H +  D P+P YM IR+KP+PW CSDCSL D++CF KCKAERA
Sbjct:   26 GGD--HGADEVDKWRKISIVATGVVILMSGRELLSLSSHGHGEHSDKPLPDYMHIRSKPFPWECSDCSLFDTDCFKKCKAERA 106
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S2G097_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G097_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.610e-15
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:   52 SARRSMSGGDAAHAAE-EMSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAER 312
            S+ R+MSGG     AE +M+ W K +V + +  V+V G+V+   E  H   +AP  S+ KIR KPYPW CSDC+L D EC+ +C+A +
Sbjct:   19 SSTRAMSGGHCPVQAEADMNNWIKISV-VAIGGVSVAGVVIGYLESQHHHHEAPPRSFKKIRAKPYPWECSDCTLFDLECWKECRANK 105
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S1MUA2_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MUA2_HEMAN)

HSP 1 Score: 70.9 bits (172), Expect = 1.410e-13
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:   10 VRTAVRRPAAAAVASARRSMSGGDAAHAAEEMSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAERA 315
            VRTAV RP       A R MSG D   A + M  WK  +    V +VA+ G V +   H H D +     YM +RNK +PW CSDC+L DS+C+A+ +A ++
Sbjct:   25 VRTAVSRP-------AFRQMSG-DREEATKLMGTWKTISAVGFVATVAIGGFVYSQSVHEHFDFEKNKFHYMHVRNKQFPWSCSDCNLFDSKCWAEARAAKS 118
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S4EH99_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH99_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.680e-12
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  100 EMSKWKKTTVGMGVLS-VAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAERA 315
            E+  W K ++ + V   VA+    LA EEHHHR  D P+P YM IR+K +PW C  C L D  C+ KC+ E++
Sbjct:   34 ELWTWIKISIFVCVPGCVAMVAKDLAIEEHHHRP-DGPLPEYMSIRSKEFPWECDQCPLFDLNCWKKCREEQS 105
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S3Y541_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y541_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 3.670e-10
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:  103 MSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPS----YMKIRNKPYPWMCSDCSLLDSECFAKCKAERA 315
            M KWKK + GM V  + V G++ A +   H             YMKIRNKPYPW C+DC   DS C  +CKA+ A
Sbjct:    1 MVKWKKMSQGM-VAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFDSACHKECKAKLA 74
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S4DCJ6_HETAK (Hypothetical protein (Fragment) n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCJ6_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 3.690e-10
Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:  103 MSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPS----YMKIRNKPYPWMCSDCSLLDSECFAKCKAERA 315
            M KWKK + GM V  + V G++ A +   H             YMKIRNKPYPW C+DC   DS C  +CKA+ A
Sbjct:    1 MVKWKKMSQGM-VAFMGVVGVLTAIQHSMHXXXXXXXXXXXXXYMKIRNKPYPWTCTDCDFFDSACHKECKAKLA 74
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S0EE19_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE19_9CRYP)

HSP 1 Score: 59.7 bits (143), Expect = 2.960e-9
Identity = 29/73 (39.73%), Postives = 37/73 (50.68%), Query Frame = 1 
Query:   97 EEMSKWKKTTVGMGVLSVAVTGLVLATEEHHHRDEDAPVPS----YMKIRNKPYPWMCSDCSLLDSECFAKCK 303
            EE   WK  ++G  VL   V          HH D  A        Y+++RNK +PW CSDC+L DSEC+  CK
Sbjct:   41 EESDFWKNVSLGGLVLVGVVGAWEYKVHLDHHNDPHADPEKNNFPYIRVRNKEFPWSCSDCNLFDSECWKACK 113
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: A0A7S0DDR3_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DDR3_MICPS)

HSP 1 Score: 55.8 bits (133), Expect = 6.760e-8
Identity = 41/105 (39.05%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   16 TAVRRPAAAAVASARRSMSGGDAAHAAEEMSKWKKTT-------VGMGVLSVAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAE 309
            T  RR   A V  +RR+MSGG       EM+KW+  T       VG G+ S        A  EHHH  E  P  SY++IRNK +PW   DC L +   + KC+ E
Sbjct:    9 TLARRAGKAPVRVSRRNMSGGSIEEEIAEMNKWRAVTFLAVPACVGFGIYS-------FANMEHHHAAE-RPAYSYLRIRNKIFPWG-GDCGLFE---YGKCQEE 101
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BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Match: B8BXS5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXS5_THAPS)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   97 EEMSKWKKTTVGMG----VLSVAVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKCKAER 312
            +EM KW K +  +     VLSV     ++   +H HR    P+P YM I+ K +PW C  C+L D EC+ KC+AE+
Sbjct:   67 QEMWKWVKISAVVATPVCVLSVLKDIFLV---DHVHRPH-GPLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig6.12426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FHU0_ECTSI2.260e-5384.47Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A4D9D930_9STRA1.130e-1950.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2G097_9STRA1.610e-1544.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1MUA2_HEMAN1.410e-1341.18Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S4EH99_9STRA1.680e-1243.84Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3Y541_HETAK3.670e-1044.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DCJ6_HETAK3.690e-1044.00Hypothetical protein (Fragment) n=5 Tax=Heterosigm... [more]
A0A7S0EE19_9CRYP2.960e-939.73Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0DDR3_MICPS6.760e-839.05Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
B8BXS5_THAPS1.080e-739.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig6contigP-fluviatile_contig6:982464..984515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1e-40
Seed eggNOG ortholog2880.D7FHU0
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
EggNOG OGs2BY4U@1,2SBT1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Exons3
Model size324
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig6.12426.1prot_P-fluviatile_contig6.12426.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig6 982464..984515 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816982.4467611-CDS-P-fluviatile_contig6:982463..9825741622816982.4467611-CDS-P-fluviatile_contig6:982463..982574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 982464..982574 -
1693570676.4418502-CDS-P-fluviatile_contig6:982463..9825741693570676.4418502-CDS-P-fluviatile_contig6:982463..982574Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 982464..982574 -
1622816982.458703-CDS-P-fluviatile_contig6:983140..9832561622816982.458703-CDS-P-fluviatile_contig6:983140..983256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 983141..983256 -
1693570676.460749-CDS-P-fluviatile_contig6:983140..9832561693570676.460749-CDS-P-fluviatile_contig6:983140..983256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 983141..983256 -
1622816982.4690037-CDS-P-fluviatile_contig6:984418..9845151622816982.4690037-CDS-P-fluviatile_contig6:984418..984515Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 984419..984515 -
1693570676.4772918-CDS-P-fluviatile_contig6:984418..9845151693570676.4772918-CDS-P-fluviatile_contig6:984418..984515Porterinema fluviatile SAG_2381CDSP-fluviatile_contig6 984419..984515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig6.12426.1

>prot_P-fluviatile_contig6.12426.1 ID=prot_P-fluviatile_contig6.12426.1|Name=mRNA_P-fluviatile_contig6.12426.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
AAFVRTAVRRPAAAAVASARRSMSGGDAAHAAEEMSKWKKTTVGMGVLSV
AVTGLVLATEEHHHRDEDAPVPSYMKIRNKPYPWMCSDCSLLDSECFAKC
KAERAEQ*
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mRNA from alignment at P-fluviatile_contig6:982464..984515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig6.12426.1 ID=mRNA_P-fluviatile_contig6.12426.1|Name=mRNA_P-fluviatile_contig6.12426.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2052bp|location=Sequence derived from alignment at P-fluviatile_contig6:982464..984515- (Porterinema fluviatile SAG_2381)
GCTGCGTTCGTGAGGACGGCGGTACGGCGGCCAGCGGCCGCCGCGGTGGC
TTCGGCTCGCCGCAGCATGTCCGGTGGCGACGCCGCCCACGCTGCCGGTG
AGAAACCGGTCTGGCAAAAAGTCTGTGCCGCATCAAGCCGGGTGTTGCAG
GAGGGAACGAATGACGTATGTGATGTGCAGAGTTGAGGTGGTCGTGGCGG
CGGTATTGGTGGTCGTGGTGGTGGTCGTGGTGGTGGTGGTCGTGGTGGTG
GTCGTGGTCGTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGCACGGTT
GGTTGGTTTGACGCTTGAATTAAGCGGGGTAGGCGGCTGTAGGCCGTCTG
AGATATATGGGTGCTGGGTTCCGATGCTGCGGACGTCGTCACTGCTACTG
CCAGCGGATCGCATCGTCGCCCTTTAGGGCGGCAGCTCGGTACCCTTTGG
CTCTGTTCTCTCAGGACTCGGCGAGAAGCATCTGTCCGCGTGGGTGCCTG
CTGTACCGTGTTGTTGCCATGCCTCCTCGTCGGAAGCGGTTGCGCTGCTG
CCGTGGCCTTGTCGCTCTGCTTTTCCTTATTCGTGGCCTCATTATTATTT
TTTTCGTTCGTCCCATCTCTTTATGGCATCGTCTACCCTTCTCGTCTTCC
GGTGCTTCCGTGCTCGTTTCGGCGCAGGCGCACACATACACGCGGTGGCG
TATGGGCACTCTGTACAACTGACTAGACGTACCCATCCGGGGTCACACAG
GAAGAGATTCCCTCACCGTTTTATTTCTTCCTTGTGTGTCTTTTAGTCCC
TCCCTACCTCCTGCGGTGCTTGCCGACATTTTTATCTTGAGGAGGGTTCA
GCCATCCCTTTCTCTCGTCAACGTTGAGGTCGACGTGTGTGTGCTCACGT
GCTTTTCAGCTGTGTGATCGCGTTCCACTGCGAAGTTGTCAACATTTCAC
CCGTACCGGGATTCGAACTCACAACGTTGCCGCTTGAAGGTTTTGGAGGT
TACCACTAGGCCTACGGAGCGAACGGTTCTTGTATAGCGCAAATATGCCA
TGCAAAAGGAAAAAAAAAAATTGACACACCCGCCGAGCAATCTCATGAGA
TTTTAACGCGGGCGATATCTGCTTGCACGACGTACACGTCTTGGAGGTAT
TTGTCAGATGGCTTAGGTTGTTGTACACTCTCGTGAGACTGAACCTCTCC
GTTGCCCCGCTTCCCTCCCCGCCCTGCCCCATTACCTCCCGGATTTGGTC
TGCATGCAGAGGAGATGTCAAAGTGGAAGAAGACGACGGTCGGCATGGGT
GTGTTGAGCGTTGCGGTCACGGGGCTGGTGCTCGCCACTGAAGAGCACCA
CCACCGAGACGAGGATGCGCCTGTGGTGAGGAGAGGAAGTGACCAATTTG
TATTGCCTGCATATGCCGATTCGCGGTATTGTAGGCGCTCAGCACCCCTC
CCATGCCTGCCTGGCTGTCGTCAGCCCGGGTCGTAGATTTCGTGTTTTAA
CTTTGGTTTTTGCCTGTCGTCAAGGAACACCCTTCGGAGATGGTTCTCCT
AACCCTTTGCTTCATCACCCGGGTGGTCTTGTCCGCGTAAATTTGGAACG
CCTCTCCAGAGGGCGCGAGTAGTCGAAGAGACGATGTAAGTCAAGGCATT
TACGAAGTGCTCTGCAGCACTCCTATCGCTGCCGTGCAGAAGGAAGATGC
GTGACGACGGTCGCGAAGGTTGCTGACCGGTTATTAGTGTCCGTCCGCGT
TCTTTTTTCCCCCCTTCTCTGACCCGAACCCCTCTGGTGTCACGGCACCC
CGTCCGCCTCCGTCGTTTTCTTGCACGGTGCCCCCCTGCCTTTCTCCATC
GTTCTTGTGTGTTCACGTCCGAATGGCATTCGTTGGGTGGGGCGGTGGGT
GGTTCGGGGGTGCTTCATTCACGTACCCCCCCCTCCACCAGCCGTCGTAC
ATGAAGATCCGCAACAAGCCGTACCCGTGGATGTGCTCGGACTGCTCGCT
CCTCGATTCCGAGTGCTTCGCCAAGTGCAAGGCGGAGCGCGCCGAGCAGT
GA
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Coding sequence (CDS) from alignment at P-fluviatile_contig6:982464..984515-

>mRNA_P-fluviatile_contig6.12426.1 ID=mRNA_P-fluviatile_contig6.12426.1|Name=mRNA_P-fluviatile_contig6.12426.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig6:982464..984515- (Porterinema fluviatile SAG_2381)
GCTGCGTTCGTGAGGACGGCGGTACGGCGGCCAGCGGCCGCCGCGGTGGC
TTCGGCTCGCCGCAGCATGTCCGGTGGCGACGCCGCCCACGCTGCCGGCT
GCGTTCGTGAGGACGGCGGTACGGCGGCCAGCGGCCGCCGCGGTGGCTTC
GGCTCGCCGCAGCATGTCCGGTGGCGACGCCGCCCACGCTGCCGAGGAGA
TGTCAAAGTGGAAGAAGACGACGGTCGGCATGGGTGTGTTGAGCGTTGCG
GTCACGGGGCTGGTGCTCGCCACTGAAGAGCACCACCACCGAGACGAGGA
TGCGCCTGTGAGGAGATGTCAAAGTGGAAGAAGACGACGGTCGGCATGGG
TGTGTTGAGCGTTGCGGTCACGGGGCTGGTGCTCGCCACTGAAGAGCACC
ACCACCGAGACGAGGATGCGCCTGTGCCGTCGTACATGAAGATCCGCAAC
AAGCCGTACCCGTGGATGTGCTCGGACTGCTCGCTCCTCGATTCCGAGTG
CTTCGCCAAGTGCAAGGCGGAGCGCGCCGAGCAGTGACCGTCGTACATGA
AGATCCGCAACAAGCCGTACCCGTGGATGTGCTCGGACTGCTCGCTCCTC
GATTCCGAGTGCTTCGCCAAGTGCAAGGCGGAGCGCGCCGAGCAGTGA
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