mRNA_P-fluviatile_contig57.12138.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig57.12138.1
Unique NamemRNA_P-fluviatile_contig57.12138.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig57.12138.1 vs. uniprot
Match: D8LBB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB3_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 4.370e-125
Identity = 196/249 (78.71%), Postives = 218/249 (87.55%), Query Frame = 3 
Query:    9 YAENKVTAAEKLGISVREVSLMRLNKGLEASLLLVQGILAGLTLASTYTMVLADSLESFVGAYEAQAGEFRRAMFILCMLALMGTEDQLMQAKNDGEVWARLGWSGRLDLRVCVAVYGGCLVSSLVCAVTDTKISNAYGYPTEGWYVSAMAEGTLQADVRMWYGCNLMRCLLAWMGWFVVCRRRWRASLLSDQSEIELRGQRDKLSAAEEQISRLNGRNLDSLTTRELQELRGSLKRALDNADRMIGLR 755
            +AE++V AAE+LGI VREVSLMRLNKG+EA  LLVQG+LAGLTLAS Y M+LA+SLESFV AYEAQAGE RRAMF LC LALMGTEDQLMQAK  GEVWARLGW GRLDL+  V +YGGCLVSSLVCAV DT I+NAYG   EGWYVS M +G L++ V +WYGCNL R LLAW+G F+VCRRRWRASLL DQS+IEL+GQRDKL+AAEEQISRLNGRNLD LTT+ELQELRGSLKRALDNA+RMIGLR
Sbjct:  329 FAEDEVRAAERLGIPVREVSLMRLNKGVEAGTLLVQGVLAGLTLASAYAMLLAESLESFVAAYEAQAGEIRRAMFFLCTLALMGTEDQLMQAKGKGEVWARLGWWGRLDLQGSVLLYGGCLVSSLVCAVADTGIANAYGSSAEGWYVSEMEDG-LRSTVLLWYGCNLARLLLAWIGLFLVCRRRWRASLLGDQSQIELKGQRDKLAAAEEQISRLNGRNLDPLTTKELQELRGSLKRALDNAERMIGLR 576
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig57.12138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB3_ECTSI4.370e-12578.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig57contigP-fluviatile_contig57:489523..493114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size1105
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig57.12138.1prot_P-fluviatile_contig57.12138.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig57 489849..492652 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816942.2662847-UTR-P-fluviatile_contig57:489522..4898481622816942.2662847-UTR-P-fluviatile_contig57:489522..489848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 489523..489848 -
1693570544.2163513-UTR-P-fluviatile_contig57:489522..4898481693570544.2163513-UTR-P-fluviatile_contig57:489522..489848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 489523..489848 -
1622816942.3402789-UTR-P-fluviatile_contig57:492652..4926611622816942.3402789-UTR-P-fluviatile_contig57:492652..492661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 492653..492661 -
1693570544.280703-UTR-P-fluviatile_contig57:492652..4926611693570544.280703-UTR-P-fluviatile_contig57:492652..492661Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 492653..492661 -
1622816942.3543446-UTR-P-fluviatile_contig57:493052..4931141622816942.3543446-UTR-P-fluviatile_contig57:493052..493114Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 493053..493114 -
1693570544.2893374-UTR-P-fluviatile_contig57:493052..4931141693570544.2893374-UTR-P-fluviatile_contig57:493052..493114Porterinema fluviatile SAG_2381UTRP-fluviatile_contig57 493053..493114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816942.2790608-CDS-P-fluviatile_contig57:489848..4900211622816942.2790608-CDS-P-fluviatile_contig57:489848..490021Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 489849..490021 -
1693570544.2261496-CDS-P-fluviatile_contig57:489848..4900211693570544.2261496-CDS-P-fluviatile_contig57:489848..490021Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 489849..490021 -
1622816942.2927024-CDS-P-fluviatile_contig57:490838..4909621622816942.2927024-CDS-P-fluviatile_contig57:490838..490962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 490839..490962 -
1693570544.2363472-CDS-P-fluviatile_contig57:490838..4909621693570544.2363472-CDS-P-fluviatile_contig57:490838..490962Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 490839..490962 -
1622816942.3052914-CDS-P-fluviatile_contig57:491141..4912821622816942.3052914-CDS-P-fluviatile_contig57:491141..491282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 491142..491282 -
1693570544.2460904-CDS-P-fluviatile_contig57:491141..4912821693570544.2460904-CDS-P-fluviatile_contig57:491141..491282Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 491142..491282 -
1622816942.317798-CDS-P-fluviatile_contig57:492053..4921941622816942.317798-CDS-P-fluviatile_contig57:492053..492194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 492054..492194 -
1693570544.254566-CDS-P-fluviatile_contig57:492053..4921941693570544.254566-CDS-P-fluviatile_contig57:492053..492194Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 492054..492194 -
1622816942.3281689-CDS-P-fluviatile_contig57:492523..4926521622816942.3281689-CDS-P-fluviatile_contig57:492523..492652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 492524..492652 -
1693570544.2689369-CDS-P-fluviatile_contig57:492523..4926521693570544.2689369-CDS-P-fluviatile_contig57:492523..492652Porterinema fluviatile SAG_2381CDSP-fluviatile_contig57 492524..492652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig57.12138.1

>prot_P-fluviatile_contig57.12138.1 ID=prot_P-fluviatile_contig57.12138.1|Name=mRNA_P-fluviatile_contig57.12138.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=236bp
MRLNKGLEASLLLVQGILAGLTLASTYTMVLADSLESFVGAYEAQAGEFR
RAMFILCMLALMGTEDQLMQAKNDGEVWARLGWSGRLDLRVCVAVYGGCL
VSSLVCAVTDTKISNAYGYPTEGWYVSAMAEGTLQADVRMWYGCNLMRCL
LAWMGWFVVCRRRWRASLLSDQSEIELRGQRDKLSAAEEQISRLNGRNLD
SLTTRELQELRGSLKRALDNADRMIGLRQNNLFTT*
back to top

mRNA from alignment at P-fluviatile_contig57:489523..493114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig57.12138.1 ID=mRNA_P-fluviatile_contig57.12138.1|Name=mRNA_P-fluviatile_contig57.12138.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3592bp|location=Sequence derived from alignment at P-fluviatile_contig57:489523..493114- (Porterinema fluviatile SAG_2381)
GTGGGTGCTATGCGGAAAACAAAGTCACGGCCGCGGAGAAGCTTGGTATT
TCCGTCCGAGAGGTGAAAGTAATGGCACTGTGGTTTTGAGCAATGTTGTG
GAAGAAAAGTGCGCAGTTTTCACAGGCTTTGATGGGGAGCGTTGGTCAAA
TTTGCGTGGCATGGGGCCCATTCTCGTGTTCGAGGAAAGCGAAGCCACTC
AATGGGTCGGAGGGGGGTATCGCCGTGACAGAAGTATACCTTCCTCTAGT
GCAGACCCTTCGTCCAAAGCAGACCGTTCAGAATCCTACCCTTTTTCTCG
AGGGGTGATAGCACCGATGAACTGTCACAGGCAGCGAAACAGGTTGGGTC
CTCCTTCCTCGCTAACCACCTCCCGCGGTATAAGCTGGTGAAAGGCTCGA
GCGTTGCCTTTTTGTCCTCGCTCTGTTCATCTCCATACCCTGCTATGCGG
AAGGTATCACTGATGAGGCTGAACAAAGGCCTGGAGGCCAGCCTCCTGCT
CGTGCAGGGGATCTTGGCAGGCCTGACTCTGGCGTCAACGTATACGATGG
TACTAGCGGACAGCCTCGAAAGCTTCGTCGGTGCATACGAGGTGAGGGCG
TGTCTATCCACATGAAATTGGCCCGCTGAGGAGTGCACCCATACATTTTG
CCCTTAATTGGCGAGCCCCGGCGCGTCAACAGTGCCATGGGGTATAAGAA
GAACATTAAGCGTCGCGAGTACTCAAGAATTTTATTGCGGGTACTATTCG
CTGGAGATTCCCGCCTGTAAAATGGCGAAACGTACCTGCGCACCTGTCCA
TAATCAAGCCTTGCAATTTAAGTGAGCTCCAAATGCATGAGTGCTGACTG
CACACCACCAACGGTCAAAGCGGTCACGAAATTGACTGTTATTTTTGCCG
CGACCGCTCCCCACCGGCAGGCCCAGGCCGGGGAGTTCCGCCGCGCAATG
TTCATCTTGTGCATGCTGGCCCTCATGGGAACCGAGGACCAACTCATGCA
GGCTAAGAATGACGGAGAGGTTTGGGCGAGGCTCGGCTGGTCGGGACGGC
TTGACTTAAGGGTAGGGGCTGTGCCATGCTTCCGCGGAGCTGCATCCTTG
TAGATGCCGCAGCCCACTCAAGGATAATCCCTCTGTGGGCTGCGTTAATC
TTGGGTGGGCGTTCCGGCGCATCACCCCGATGTGTGTGCCCGTTCGACGT
TGGCCCTGTCTCGCTATCCTTAGCCTTTGACGAGACCGACTAGAATACTG
AGTCGTGCAACCGGAACAATTCCATCCCCAGCAGCTGAACAGCTCCATCC
CCAGTAGCTCTCGACAGACGTGTGGCATCCGTCATGCAGACGCATTCGAG
ATGCATGCTCTGGAATCTCAACGACAAACATCACCTTGTTTGGGTGCAAC
CTCTCTGAAAACTCGAAGAAGTAGGTGATGCGCTCTTTTATACTCCCTTG
TGGCCCTGAGAACACCGCGCGATATCACATCCAAGGTTGGATGAACTTCC
ACAGCTCGAGTTCCTGCGTATCATACTACGAGAGGGATGCATTGAAACGC
CATTAAGGCGGGGGTCTCAGTCAACTGCCACCATGAGATTTTTGACACAC
TCCAACCTATCGATAATACTTATCGTTAGAAAATTTGGCTATTTTTTGTT
GATGAGTGGATTCAAAACCTTAGGCCGCTACCGCACTGACTTCAACACGG
CCTACACCTCAAGTGTTTATTGCTCGGGGTTGTGTTCCTCCCCTCAAAGT
TGTCGACGGCATCCCCCAACAGTACAGCAGGAGGCGCGCTCTGATTGATT
CGAGCAGCACCTCGGACCGATGACCTCGCTAGGTTTGCGTCGCCGTCTAC
GGCGGATGTCTCGTGAGCTCGCTTGTGTGTGCGGTCACCGACACGAAAAT
CTCAAATGCGTACGGTTACCCGACCGAAGGGTGGTACGTCAGCGCGATGG
CCGAAGGCACCTTGCAAGCAGACGTGAGTACTTGTTCCAGAAACGTTCAA
GAGGACGCATCAATCCTGGATTACAGCACATTGCAAAGTCCACAACTGTG
TGTCATGAAATTTTGGGAGCCTAGAGAATTTCGTCGGGCCCCTTGACGCG
ATGGTGTGGCACAGCGCAATGCTCATGCACGCCTGAACGCGGTCGTTCGC
AGGTCCGCATGTGGTACGGTTGTAACCTGATGAGGTGTCTGCTCGCCTGG
ATGGGGTGGTTTGTGGTCTGCAGGCGACGGTGGCGAGCATCTTTGCTCAG
CGATCAGTCGGAGATCGAGTTGAGAGGTAAGTGTACAAGGGAAGGAAAAA
GAACGTTATGCACCAAACTGACGTCGCCTTCTCGCAAGATGTGTCGGCTG
CGTGCTTGAGAGTTTAATCGCAGCCATAGCTGGATTACATCAACGCCCGA
AGACATGCCCGCTGCCGCTGCCGCACCCAAATCCGTAGGTAGTGAAATCT
CGTAGAAACATAGCGGAATGCCTAGGGAGTGCTGAGTCTGAACTGTACTC
ACTCGTTAGTGTCAGCCAAGAGGGCACAGAAATTGACAATGACCAATTCA
CAATTCACCAGGCATCGACAAACCAGCCCAGCCTCCCAGTGCCTGTTTTT
ACGTGTGATCTTTTACGCAATGTTGGTGGATGGATCCGAGAGCAATGGTG
TCGTGGCAAAAAGAACACTGCGATATGTGACGACGACATGCTGTTCACTA
AAAACCTGCACCCGGTTTCACTTGAACTTTTTGTGTCAAAGTGTGACATC
CTGCGCGCCCCACACGTTGTTTTTCGAGCACAACGCTTGTCACGCAAAGC
CAGAATGCTCGTGTATCATGTCTCGCAAGGCCTTTGCCCAAAATATCCGG
ATCAAGTATATACCCCCGCCCACCCTGCACGGCCGGCTCTTTGCCGGGCT
CGACGTCAGCTTAAGTGCCGAGCGCCGTCGATACATTTCGGCTGCTACCA
TGTCCGACCCCCGCGGTATAGCCACGAAACGGGCGAAGAAGGCCACCATT
CAGATTTCACCAGCCTCATGCACCGACAGGCCCCTACGCGAGCAAAAACA
GTCTCACTTTCCCCCACTTCCGTGCACACGCGCGCGCGTGCAGGCCAACG
GGATAAGCTTTCCGCCGCGGAGGAACAGATCTCGCGCCTCAACGGGAGAA
ACTTGGATTCTCTCACGACTCGAGAGTTGCAAGAGCTGAGGGGATCCCTT
AAGCGGGCCCTTGATAATGCCGATCGTATGATTGGCTTGCGACAAAACAA
CCTTTTCACTACGTAAGCGGCAGCCGACAAAGCTACGCAGATTGGTGCGA
AACAAGCGACTGGCTCGCTCAACATATTTATACTGAGTGCTACGAAAGGT
GCTAGATGTTGAACCCCGATCGGTCGAGGTGCTTTTTTTTGTGGCCATCT
TTTTATCTCGTCGACGAATTAAAGGGTCACATGCGTTTCTCGAGGTCTAG
TAGGCAAGCAGATTAAGACAAGGAATAGCCATTCTGTCGACCTGGCGATT
TCGGATCCGCATGGGAACTACAGCCGAGGTTTACACAATCCCGCAAAACG
CCTCTTGGAGACAATGCCTTGGGAAAACACCATTATCATCGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig57:489523..493114-

>mRNA_P-fluviatile_contig57.12138.1 ID=mRNA_P-fluviatile_contig57.12138.1|Name=mRNA_P-fluviatile_contig57.12138.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1416bp|location=Sequence derived from alignment at P-fluviatile_contig57:489523..493114- (Porterinema fluviatile SAG_2381)
ATGAGGCTGAACAAAGGCCTGGAGGCCAGCCTCCTGCTCGTGCAGGGGAT
CTTGGCAGGCCTGACTCTGGCGTCAACGTATACGATGGTACTAGCGGACA
GCCTCGAAAGCTTCGTCGGTGCATACGAGATGAGGCTGAACAAAGGCCTG
GAGGCCAGCCTCCTGCTCGTGCAGGGGATCTTGGCAGGCCTGACTCTGGC
GTCAACGTATACGATGGTACTAGCGGACAGCCTCGAAAGCTTCGTCGGTG
CATACGAGGCCCAGGCCGGGGAGTTCCGCCGCGCAATGTTCATCTTGTGC
ATGCTGGCCCTCATGGGAACCGAGGACCAACTCATGCAGGCTAAGAATGA
CGGAGAGGTTTGGGCGAGGCTCGGCTGGTCGGGACGGCTTGACTTAAGGG
CCCAGGCCGGGGAGTTCCGCCGCGCAATGTTCATCTTGTGCATGCTGGCC
CTCATGGGAACCGAGGACCAACTCATGCAGGCTAAGAATGACGGAGAGGT
TTGGGCGAGGCTCGGCTGGTCGGGACGGCTTGACTTAAGGGTTTGCGTCG
CCGTCTACGGCGGATGTCTCGTGAGCTCGCTTGTGTGTGCGGTCACCGAC
ACGAAAATCTCAAATGCGTACGGTTACCCGACCGAAGGGTGGTACGTCAG
CGCGATGGCCGAAGGCACCTTGCAAGCAGACGTTTGCGTCGCCGTCTACG
GCGGATGTCTCGTGAGCTCGCTTGTGTGTGCGGTCACCGACACGAAAATC
TCAAATGCGTACGGTTACCCGACCGAAGGGTGGTACGTCAGCGCGATGGC
CGAAGGCACCTTGCAAGCAGACGTCCGCATGTGGTACGGTTGTAACCTGA
TGAGGTGTCTGCTCGCCTGGATGGGGTGGTTTGTGGTCTGCAGGCGACGG
TGGCGAGCATCTTTGCTCAGCGATCAGTCGGAGATCGAGTTGAGAGGTCC
GCATGTGGTACGGTTGTAACCTGATGAGGTGTCTGCTCGCCTGGATGGGG
TGGTTTGTGGTCTGCAGGCGACGGTGGCGAGCATCTTTGCTCAGCGATCA
GTCGGAGATCGAGTTGAGAGGCCAACGGGATAAGCTTTCCGCCGCGGAGG
AACAGATCTCGCGCCTCAACGGGAGAAACTTGGATTCTCTCACGACTCGA
GAGTTGCAAGAGCTGAGGGGATCCCTTAAGCGGGCCCTTGATAATGCCGA
TCGTATGATTGGCTTGCGACAAAACAACCTTTTCACTACGTAAGCCAACG
GGATAAGCTTTCCGCCGCGGAGGAACAGATCTCGCGCCTCAACGGGAGAA
ACTTGGATTCTCTCACGACTCGAGAGTTGCAAGAGCTGAGGGGATCCCTT
AAGCGGGCCCTTGATAATGCCGATCGTATGATTGGCTTGCGACAAAACAA
CCTTTTCACTACGTAA
back to top