mRNA_P-fluviatile_contig55.11891.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig55.11891.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI) HSP 1 Score: 778 bits (2009), Expect = 4.950e-262 Identity = 470/736 (63.86%), Postives = 536/736 (72.83%), Query Frame = 1
Query: 517 TVTARLRDVVDQLQGELQVGATPQVQSRMELDGLFAELRAKQQGRDGAADTLLTXXXXXXXXXXAGKAAAQAQSLSGSAARPPGRPEALTEGSHDLESLSEMLDRVQTSARTHALEEARFRSMALLSTAGLGAGAIGDDPNRSWVAIGNQRDMKTRFRKIREGRVGWAVLPLLMKAKKAGVPLSTGVYNAAIAAYSGTPRKYKDALRVLNMLRSEKDPGVQPDLGSYNSAMWVCSEAGQWRLVMELMAQAXXXXXXXXXXXXXXXXXXXXXXXXXARARRLLRRMVSERVVSPDVRTYNGLLEAAGMGSPSPRQHMIEVVHEMEQAGVEPNSYTYTLLLECLARRRKTHDGFQVMARLVDARVPLTPLGHRAGLKFCESYGDWRRAMVLMEDMRVAKHRPSGYLYLLAVKACAXXXXXXXXXSLMVERCSLDAREEREANEKGSARPPSPRRAEAEAKAKRRAAKTNMETLEAVLSAVSEAGQFEVAIRLVQQMRSAGYTPSKECYVYTLRAAAKWGRWDVIEGLMQDMRALGVGVADDATPPEETENVANGA--ESGGGXGASGDSRSRVRLSSDCYAPLVEAYAQCSMWERAIEAYKEGFAVCPERLTVEPVNYRVYECVLKACVGAADGLTALEVLRRQVAEPLLLQRLPPSPLSPPHTALAIGDGXXXXXXXXXXXXXXXXXVETDVSGGPPDRRCWSLAAEALGRAGMVDEGHRILMEMVISGLPLRESTK 2718
TV++RL+DVV QLQGEL+ G TPQV+S ++LD LFA+LR ++ G T + K + S AA G +A + + DLESLS MLDRVQ SA+ L EA RS+ L S G IGDDP RSWV IGNQRDMKTRFR IREGRVGWAVLPL+MKAK+AG+PLSTGVYNAAIAAYSGTPRKY+DALRVLNMLR E+DPGV+PDLGSYN+AMWVCSEAGQWRLVMELM Q XXXXXXXXXXXXXXXXXXXXXXXXX GL+EAAGMGS +PR+HMIEVVHEMEQAGVEPNSYT+T LL CLARRRK DGFQVMARLVDAR PL P GHRAGL+FC++YGDWRRAM+LMEDMRVAK RPSG +YLLAVKACA SLMVER +LD REE+EANEK +P ++ EA AKAK++AA+T+M+TLE VLSAVSEAGQFEVA+RLVQQMR+AG TPSK+CY+YTLRAA+KWGRWDVIE LM+DMRAL VGV + +ET+ + +G +G G G G+ LSSDCYAPLVEAYAQ SMWERAIEAY+EGF V E PV YRV+ECVLKACV +DG TALEV+ RQ AEP LQ+L S T G G T++SGGPPDRRCW LAAEALGRAGM+ EGHR+LM MV SG+PLRESTK
Sbjct: 63 TVSSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRGRNSKTPTTTGPKTIPPKSPKQPRRLPSGKFCAA---GSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRS-----GGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSGPMYLLAVKACAKGAQWERALSLMVERRALDVREEKEANEKNGGKPLQRQKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAE----KETDAMDDGVVVNNGEGKGGGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVFECVLKACVEVSDGRTALEVIGRQAAEPKALQKL-----SSAITTEGEGKG-------------------TELSGGPPDRRCWCLAAEALGRAGMIQEGHRVLMAMVDSGIPLRESTK 761
BLAST of mRNA_P-fluviatile_contig55.11891.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE) HSP 1 Score: 593 bits (1529), Expect = 1.430e-195 Identity = 365/539 (67.72%), Postives = 418/539 (77.55%), Query Frame = 1
Query: 517 TVTARLRDVVDQLQGELQVGATPQVQSRMELDGLFAELRAKQQGRDGAADTLLTXXXXXXXXXXAGKAAAQAQSLSGSAARPPGRPEALTEGSHDLESLSEMLDRVQTSARTHALEEARFRSMALLSTAGLGAGAIGDDPNRSWVAIGNQRDMKTRFRKIREGRVGWAVLPLLMKAKKAGVPLSTGVYNAAIAAYSGTPRKYKDALRVLNMLRSEKDPGVQPDLGSYNSAMWVCSEAGQWRLVMELMAQAXXXXXXXXXXXXXXXXXXXXXXXXXARARRLLRRMVSERVVSPDVRTYNGLLEAAGMGSPSPRQHMIEVVHEMEQAGVEPNSYTYTLLLECLARRRKTHDGFQVMARLVDARVPLTPLGHRAGLKFCESYGDWRRAMVLMEDMRVAKHRPSGYLYLLAVKACAXXXXXXXXXSLMVERCSLDAREEREANEKGSARPPSPRRAEAEAKAKRRAAKTNMETLEAVLSAVSEAGQFEVAIRLVQQMRSAGYTPSKECYVYTLRAAAKWGRWDVIEGLMQDMRALGVGVADD 2133
TV++RL+DVV QLQGEL+ G+TPQV+S ++LDGLFA+LR ++ G T T + K Q + L G +A EG+ DLESLS+MLDRVQ SA+ L EA RS+AL S G IGDDP RSWV IGNQRD+KTRFR IREGRVGWAVLPL+MKAK+AG+PLSTGVYNAAIAAY+GTPRKY+DALRVLNMLR E+DPGV+PDLGSYN+AMWVCSEAGQWRLVMELM Q XXXXXXXXXXXXXXXXXXXXXXXXX GL+EAAGMGS +PR+HMIEVVHEMEQAGVEPNSYT+T LL CLARRRKT DGFQ ARLVDAR PL P GHRAGL+FC++YGDWRRAM+LMEDMRVAK RPS +YLLAVKACA XXXXXXX VER +LD REE+E +EK +P ++ EA AKAK++AA+T+M+TLE VLSAVSEAGQFEVA+RLVQQMR+AG TPSK+CY+YTLRAA+KWGRWDVIE LM+DMRAL VGV D
Sbjct: 113 TVSSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRGRNSTTTTTTGPNTIPPKSPK---QQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRS-----GGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQ--ARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGXXXXXXXXXXVERRALDVREEKEMDEKNGGKPLKRKKVEAVAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAD 640
BLAST of mRNA_P-fluviatile_contig55.11891.1 vs. uniprot
Match: A0A6H5L7D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D9_9PHAE) HSP 1 Score: 184 bits (467), Expect = 3.820e-47 Identity = 99/164 (60.37%), Postives = 111/164 (67.68%), Query Frame = 1
Query: 2227 LSSDCYAPLVEAYAQCSMWERAIEAYKEGFAVCPERLTVEPVNYRVYECVLKACVGAADGLTALEVLRRQVAEPLLLQRLPPSPLSPPHTALAIGDGXXXXXXXXXXXXXXXXXVETDVSGGPPDRRCWSLAAEALGRAGMVDEGHRILMEMVISGLPLRESTK 2718
LSSDCYAPLVEAYAQ SMWERAIEAY+EGF V E PV YRVYECVLKACV +DG TALEV+ RQ AEP LQ++ T G+G ++SGGPPDRRCW LAAEALGRAGM++EGHR+LM MV SG+PLRESTK
Sbjct: 2 LSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALEVIGRQAAEPKALQKMS-------STITTEGEGKG-----------------AELSGGPPDRRCWCLAAEALGRAGMINEGHRVLMAMVDSGIPLRESTK 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig55.11891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig55.11891.1 >prot_P-fluviatile_contig55.11891.1 ID=prot_P-fluviatile_contig55.11891.1|Name=mRNA_P-fluviatile_contig55.11891.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1024bp MVSPVSPLSNAVPPYFKTATGQGSTLLPVATHVTASATAAAASTLERLLLback to top mRNA from alignment at P-fluviatile_contig55:192979..205357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig55.11891.1 ID=mRNA_P-fluviatile_contig55.11891.1|Name=mRNA_P-fluviatile_contig55.11891.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=12379bp|location=Sequence derived from alignment at P-fluviatile_contig55:192979..205357- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig55:192979..205357- >mRNA_P-fluviatile_contig55.11891.1 ID=mRNA_P-fluviatile_contig55.11891.1|Name=mRNA_P-fluviatile_contig55.11891.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=6144bp|location=Sequence derived from alignment at P-fluviatile_contig55:192979..205357- (Porterinema fluviatile SAG_2381)back to top |