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Homology
BLAST of mRNA_P-fluviatile_contig5.11252.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE) HSP 1 Score: 285 bits (730), Expect = 2.220e-82 Identity = 172/279 (61.65%), Postives = 203/279 (72.76%), Query Frame = 1
Query: 460 VPQQQVRCPQHEFFEAHLPWGRRRRISGNLRWKM---GQRTRQV--------------FCAAEGPELVMYDLESDSNAGLPPRAQYFVLGVRSVKTGASIMEIDVTVTDDFE-RTLGWSRNSAAAPGFAHVETRSVTLTAPGRHEHARWVLALEEAQGWTEKREREALVEELELSLPFRENAIEQVRHQLPDDRTIEDILGVSAAKMNPGCVLQSMVFDAAEAAAANAAVEASAGAVSSPEMADTGGXXXG------RKGSIYGAPSSSLRGFFSIFDS 1224
VPQ + PQ F EAHLPWG+RRR+SGNLR K+ G+ R+V FCAAEG ELV+YD ESDSNAGLPPRA+Y V+GVR++KTG + E++VTV D+ E +LGW ++ PG A VETRSVTLTA GRHEHARW LALEEAQ WTEK+EREAL+EELELSLPFRE AIE V H+LPD TIEDILGVS A NPGCVL+S+VFDAAEAAA +AA A+ G +SSPE+ T G XX RK ++ APS+SLRG FS F+S
Sbjct: 347 VPQARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRVATSGGREWGVWGGVFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDS-TIEDILGVSTAMTNPGCVLKSVVFDAAEAAA-SAAEAAAPGPLSSPEL--TAGSXXXXXXXXTRKLTV--APSASLRGLFSFFES 619
BLAST of mRNA_P-fluviatile_contig5.11252.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI) HSP 1 Score: 166 bits (420), Expect = 2.660e-41 Identity = 87/127 (68.50%), Postives = 101/127 (79.53%), Query Frame = 1
Query: 673 LGVRSVKTGASIMEIDVTVTDDFE-RTLGWSRNSAAAPGFAHVETRSVTLTAPGRHEHARWVLALEEAQGWTEKREREALVEELELSLPFRENAIEQVRHQLPDDRTIEDILGVSAAKMNPGCVLQS 1050
+GVR++KTG + E++VTV D+ E +LGW ++ PG A VETRSVTLTA GRHEHARW LALEEAQ WTEK+EREAL+EELELSLPFRE AIE V H+LPD IEDILGVS A NPGCVL+S
Sbjct: 1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTAYGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDS-AIEDILGVSTAMTNPGCVLKS 126
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1265 |
| Cds size | 1263 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622816772.7420788-CDS-P-fluviatile_contig5:3816038..3816613 | 1622816772.7420788-CDS-P-fluviatile_contig5:3816038..3816613 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3816039..3816613 + |
| 1693569712.5578492-CDS-P-fluviatile_contig5:3816038..3816613 | 1693569712.5578492-CDS-P-fluviatile_contig5:3816038..3816613 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3816039..3816613 + |
| 1622816772.7524102-CDS-P-fluviatile_contig5:3817352..3817497 | 1622816772.7524102-CDS-P-fluviatile_contig5:3817352..3817497 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3817353..3817497 + |
| 1693569712.571798-CDS-P-fluviatile_contig5:3817352..3817497 | 1693569712.571798-CDS-P-fluviatile_contig5:3817352..3817497 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3817353..3817497 + |
| 1622816772.7626407-CDS-P-fluviatile_contig5:3817974..3818157 | 1622816772.7626407-CDS-P-fluviatile_contig5:3817974..3818157 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3817975..3818157 + |
| 1693569712.5818646-CDS-P-fluviatile_contig5:3817974..3818157 | 1693569712.5818646-CDS-P-fluviatile_contig5:3817974..3818157 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3817975..3818157 + |
| 1622816772.7731144-CDS-P-fluviatile_contig5:3819218..3819362 | 1622816772.7731144-CDS-P-fluviatile_contig5:3819218..3819362 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3819219..3819362 + |
| 1693569712.5959072-CDS-P-fluviatile_contig5:3819218..3819362 | 1693569712.5959072-CDS-P-fluviatile_contig5:3819218..3819362 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3819219..3819362 + |
| 1622816772.7834482-CDS-P-fluviatile_contig5:3820076..3820292 | 1622816772.7834482-CDS-P-fluviatile_contig5:3820076..3820292 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3820077..3820292 + |
| 1693569712.6061676-CDS-P-fluviatile_contig5:3820076..3820292 | 1693569712.6061676-CDS-P-fluviatile_contig5:3820076..3820292 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig5 3820077..3820292 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig5.11252.1 >prot_P-fluviatile_contig5.11252.1 ID=prot_P-fluviatile_contig5.11252.1|Name=mRNA_P-fluviatile_contig5.11252.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=421bp
DDGDAACAAANGVHVGNEGDHGDGGGGNDIDCEDMREMAAMRNGAGGGGS GGSDGVGGSDGVGGSDDVGGVGGGGGGGVFQRGEMSMEQRRLEERPCADR SETEGTADAPGAAPEEEEEAEEEETVVFSTHVNAPPPPLPKKAAAAAAAA SGMVPQQQVRCPQHEFFEAHLPWGRRRRISGNLRWKMGQRTRQVFCAAEG PELVMYDLESDSNAGLPPRAQYFVLGVRSVKTGASIMEIDVTVTDDFERT LGWSRNSAAAPGFAHVETRSVTLTAPGRHEHARWVLALEEAQGWTEKRER EALVEELELSLPFRENAIEQVRHQLPDDRTIEDILGVSAAKMNPGCVLQS MVFDAAEAAAANAAVEASAGAVSSPEMADTGGGGGGRKGSIYGAPSSSLR GFFSIFDSSARSPLTGDDASG back to topmRNA from alignment at P-fluviatile_contig5:3816039..3820293+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig5.11252.1 ID=mRNA_P-fluviatile_contig5.11252.1|Name=mRNA_P-fluviatile_contig5.11252.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4255bp|location=Sequence derived from alignment at P-fluviatile_contig5:3816039..3820293+ (Porterinema fluviatile SAG_2381) GATGACGGTGACGCGGCCTGTGCGGCCGCCAACGGCGTCCACGTTGGGAA
CGAGGGCGACCACGGGGATGGTGGTGGTGGAAATGATATTGATTGCGAAG
ACATGCGCGAGATGGCGGCCATGAGAAATGGTGCTGGCGGCGGCGGCAGC
GGTGGTAGTGATGGTGTTGGTGGTAGTGATGGTGTTGGTGGTAGTGATGA
TGTTGGTGGTGTTGGTGGCGGCGGCGGCGGCGGTGTTTTCCAACGGGGTG
AAATGAGCATGGAGCAACGCCGCTTGGAGGAGAGGCCTTGTGCGGATAGA
AGCGAGACCGAAGGAACCGCGGATGCACCAGGCGCCGCCCCAGAAGAGGA
AGAGGAGGCGGAAGAGGAGGAGACGGTCGTTTTCAGCACCCACGTGAACG
CTCCGCCCCCGCCACTGCCGAAAAAAGCAGCAGCAGCAGCAGCAGCAGCA
AGCGGGATGGTGCCGCAGCAGCAGGTGCGCTGCCCTCAGCACGAGTTCTT
CGAGGCGCACCTCCCGTGGGGCAGGAGGAGGAGAATATCCGGGAACCTCC
GCTGGAAGATGGGCCAGAGAACCAGGCAAGCCGACGACAGCACGTGTAAG
TCCCGGTCCTTGCGGGCTGCAAGGCGGTGACGGACGGCAAACCCTGCCGT
GTTTTTCGTTTTCGTGTCGAAGGCCCTGGAAAGCGAGCCCTCACGAGGGT
AATCCGAACAGTTTCTCGCCTCAACGAACAGCCCGCCGGGAGCAGGAGCG
CCTCCCTCCCACTCTCCCTCCCGCAGTCCTGTCCTTTTATCGTTGTATCA
TGCTTGCGTAACAAGCTGATCGAAGGTGACCATGCTTGGGGTGGGTGTGC
AGGAAAATAAGATCGCTTTGTCCATGCGCACAGGTTGCGGGCGGGCGGGG
CAGGTGCGCGTCATTCTTGCAGTATATCGCGCTCCAACCTGGAACCCACC
GACTGGTGATTCAGTCCTGTCCAGCCGCAGATTTCTGCCGAGCGGCGTGA
GCGTCTGGGCCGATATCTACATGTTCATTATTCCTCGAGGCTACATAGTT
TCCTGCCGGATCTAACTCTGATGACAGCCTGCTTTTGCCGCTGCCTCTCC
CTCTGCCTCTGCCCCTCAAGCACGAGGGCCCTGGTGTGTCAGTTGTCAAT
GTTGAGTCCAACGGAACTTTTATCCTCGCTCCCTTTGTCGCGCTTGTGCT
CGGCTGTGCCAATCAGTAACGACAGCGAGCCCTGAATGGTTTATCTTCGA
CTCTGATTTCTCTCTCTCTCTCTCTTACTTAACGATGCCCATCAAATCGA
TCCTTTGGAAGCAGGCAGGTCTTCTGCGCCGCGGAAGGGCCGGAGCTAGT
GATGTACGACCTAGAGAGCGACTCGAACGCGGGGCTGCCGCCGCGGGCGC
AGTACTTCGTTCTGGGCGTGCGCTCCGTTAAGACGGGTGCTAGCATAATG
GAGATAGACGTGAGGGAACCGAAACTCGACCGTGGTGTCAAAACTCGAGG
AAGCACGAAGTGTTTGCTCACCAGTGCGGGCGAGCTATCCGTAGGTCCTC
ATTGTGTCATCAAAGACGAGGGAGGTCCGCCCTCGAAAACGAGTATGGAC
TCGTCGGTGTTGTGTTGACTTTTTTTCAAATAGGTCAGATGTTTCACGCG
TACCGATGAGCACTCCGAAACCTTGTGGGTTTGATCTTGATCGATCGCCT
TCGCCTGCCGAAGCAGACGTTGATTGGGTAGCTGTTGCGCACGACTGTGA
GCGCGTACCCTCGGCTCTGCTAGCAAGTTGCCGAGATTCTCTCGAGGCCG
CTCGATCGATTGATTGTGTCGCGAGTTGATGTGAAATTGTGCCCACTTGC
TACCGGCTGCGATGAATGAAGCATAACCAATCAATCGCCTTTCTCACGCA
CATCAAATGGCTTGTCGCCGATTATTTGTTCGCCAGGTGACCGTCACCGA
CGATTTTGAGCGCACCCTGGGCTGGTCACGTAACTCCGCCGCGGCCCCGG
GCTTCGCCCACGTCGAGACCCGATCGGTCACGCTCACCGCCCCGGGGAGG
CACGAGCACGCTCGCTGGGTGCTGGCGCTGGAAGAGGCCCAGGGCTGGAC
GGAGAAGCGAGAACGAGAGGTAGTCTAGCCGTGTCTCGTAGAGGTTTGCC
GGCGTGTCTTTTGTTGTGGGCCAGCGATGACGGGTATTAAGGTCGCATGT
GGTATATGATCATCATCATTGATCGGAGCGGCCATCCGGACGCGGACGCG
GGGGCATCGGTCCAAAGCTGATGTGGCGATACGTAGGCGACATCAGCCGC
TACCGCTGCCGTTGCCAATGCTTTCGACATTTGTATCGTGTGTACATGTT
TGCAGGCTCAAGGTTTCTTTGTTGATTTGGTTCGTGGCGAAGGCCGCGCT
TGCCGGGTGGTCCTTAGCAGACAGTTCGCTCACTTGTGTATAGGTCAAGG
TTTGTAAACTTTTGTGGTTTTTAGGCGCCTTATTTTCGCCGTGCCTCATT
CCGATACGGCCGTTTCCGCGATCCTTGTTGCTTGCCCTGCCTGTGCGGTG
TATCCCGTCCGGCTGTAGTGTGTGGCCTGTCTCACTCGGGTTTAATTCGT
GGGGGCCTCCATCCCTGGTATTTGAGGTCGGCGGTTCACTCCTCCCTCCT
CCACGGCCATTTTTCGCATTTGAAGGCAGAAGGGGCGAGGGCGGGAATTG
GGGTTGGGGAGGAAGGTCACGTGAAGTATGGTGGGCAGCAAACCCTCACA
AGAAGGTGCAGGCCGGAGACAACCAAGACGAAAGTTGCGCCCGGCCATTG
GTGTCTTGTGTCTGTGTTTCATTTGTAGGCGCGCTTTGTTTGACAGATGT
GAATATTAAACATCACGACGGAGGGCAATGATATGAGTGGTGGGCAGATA
CGCTCGTCCTTTCTTTGACATCCTCGCGTGCTTCCGATGGCTCTCCTCGG
CGTTATCTTCCAGCAAGATGCAAACTACACCTTCTTGGGTGCTTACAGCT
TGGCGTCGGCTTGTCGTAGGTGTTTACGCCATCTTTTCTACATTCAAAGT
TCCGATTTTCGCCCCAAGTCTGCTATAATTGGTTCCATTTTGCTGGTCGA
TTATCTTTCCTCATCTTACCTTCCCCGCCGCACTTTCTGACCTGGCTGGC
TGGCTGGCTGGCTGGATGTACCTACGGCAGGCGCTGGTGGAGGAGCTTGA
GCTGTCTCTGCCTTTCCGAGAGAACGCGATCGAGCAAGTGCGGCACCAGC
TGCCCGACGATAGGACGATCGAGGACATCCTTGGAGTATCCGCCGCAAAG
ATGAACCCCGGATGCGTGCTCCAGGTGCAAGGGTGGAACAGATAACGAGT
CGAGGGCAACGGAGTTGGGGGGGAGTGGGGGGGGGATGGATCGACACACC
TACTGCCATTGCGCTTATTTTGTGCAAACGTTGTTGTTCTTGAGAGGATC
ACACGTTGACTGCCAGTCCGATACTCACTTGGACCCACACAAGTCATCAC
ATATTCAGCCCCTTGAACGTTTTCGTGGAAATCTTGTGAGTAGCTTTTAT
TGAGGATCAGTGCGGAAATTCTCACGGCGAGAACACTGGCGTACACGCGA
CTGCCTCGGATCCTTCGTGCGTGAGCATTGGCGTTGTGTCTCCACGAAGA
CGAGACGAAACTCCGTGCACATCCACGTACACGTGCAATTCTCCTGCGCG
CCTGTGTATTTGTGCTATGCTCGCTGCTCGTTTGCGTACCACATGGCGTG
TCAATCGAGCGCGATCAGCGGTGCGGTTTGGGTAGCGATCACCTTATCCT
CGCCCCTCAATGCGCTCATGGCGTTTACTGGAAGCTTCACGAAGCGGAGA
GGACCTGCTTCAGGCTTACAACTGCGGCGCGACACACGCGCGCCCTTCCC
CCTTGTGCATAGGTATGAGCCCCGAAAGGTTGTTCGTTGTTCCCTATAAG
GCGTGATGTCGTTCTTGGCGCCGAGCGACGTGTGTTGAGATCCTTCTCGT
GCCGCCACCCCATCCGCCATCGCCACGCACACACGCAGAGCATGGTTTTC
GATGCCGCAGAAGCAGCGGCGGCGAATGCGGCAGTGGAGGCATCGGCCGG
AGCCGTAAGCTCTCCGGAGATGGCGGACACCGGGGGCGGCGGGGGCGGGC
GGAAGGGCTCGATCTACGGGGCCCCCAGCTCCTCGCTGCGCGGCTTCTTC
TCCATCTTCGATTCGTCGGCCCGCTCACCGCTCACCGGGGACGACGCCAG
CGGGG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig5:3816039..3820293+ >mRNA_P-fluviatile_contig5.11252.1 ID=mRNA_P-fluviatile_contig5.11252.1|Name=mRNA_P-fluviatile_contig5.11252.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2526bp|location=Sequence derived from alignment at P-fluviatile_contig5:3816039..3820293+ (Porterinema fluviatile SAG_2381) GATGACGGTGACGCGGCCTGTGCGGCCGCCAACGGCGTCCACGTTGGGAA CGAGGGCGACCACGGGGATGGTGGTGGTGGAAATGATATTGATTGCGAAG ACATGCGCGAGATGGCGGCCATGAGAAATGGTGCTGGCGGCGGCGGCAGC GGTGGTAGTGATGGTGTTGGTGGTAGTGATGGTGTTGGTGGTAGTGATGA TGTTGGTGGTGTTGGTGGCGGCGGCGGCGGCGGTGTTTTCCAACGGGGTG AAATGAGCATGGAGCAACGCCGCTTGGAGGAGAGGCCTTGTGCGGATAGA AGCGAGACCGAAGGAACCGCGGATGCACCAGGCGCCGCCCCAGAAGAGGA AGAGGAGGCGGAAGAGGAGGAGACGGTCGTTTTCAGCACCCACGTGAACG CTCCGCCCCCGCCACTGCCGAAAAAAGCAGCAGCAGCAGCAGCAGCAGCA AGCGGGATGGTGCCGCAGCAGCAGGTGCGCTGCCCTCAGCACGAGTTCTT CGAGGCGCACCTCCCGTGGGGCAGGAGGAGGAGAATATCCGGGAACCTCC GCTGGAAGATGGGCCAGAGAACCAGGATGACGGTGACGCGGCCTGTGCGG CCGCCAACGGCGTCCACGTTGGGAACGAGGGCGACCACGGGGATGGTGGT GGTGGAAATGATATTGATTGCGAAGACATGCGCGAGATGGCGGCCATGAG AAATGGTGCTGGCGGCGGCGGCAGCGGTGGTAGTGATGGTGTTGGTGGTA GTGATGGTGTTGGTGGTAGTGATGATGTTGGTGGTGTTGGTGGCGGCGGC GGCGGCGGTGTTTTCCAACGGGGTGAAATGAGCATGGAGCAACGCCGCTT GGAGGAGAGGCCTTGTGCGGATAGAAGCGAGACCGAAGGAACCGCGGATG CACCAGGCGCCGCCCCAGAAGAGGAAGAGGAGGCGGAAGAGGAGGAGACG GTCGTTTTCAGCACCCACGTGAACGCTCCGCCCCCGCCACTGCCGAAAAA AGCAGCAGCAGCAGCAGCAGCAGCAAGCGGGATGGTGCCGCAGCAGCAGG TGCGCTGCCCTCAGCACGAGTTCTTCGAGGCGCACCTCCCGTGGGGCAGG AGGAGGAGAATATCCGGGAACCTCCGCTGGAAGATGGGCCAGAGAACCAG GCAGGTCTTCTGCGCCGCGGAAGGGCCGGAGCTAGTGATGTACGACCTAG AGAGCGACTCGAACGCGGGGCTGCCGCCGCGGGCGCAGTACTTCGTTCTG GGCGTGCGCTCCGTTAAGACGGGTGCTAGCATAATGGAGATAGACGCAGG TCTTCTGCGCCGCGGAAGGGCCGGAGCTAGTGATGTACGACCTAGAGAGC GACTCGAACGCGGGGCTGCCGCCGCGGGCGCAGTACTTCGTTCTGGGCGT GCGCTCCGTTAAGACGGGTGCTAGCATAATGGAGATAGACGTGACCGTCA CCGACGATTTTGAGCGCACCCTGGGCTGGTCACGTAACTCCGCCGCGGCC CCGGGCTTCGCCCACGTCGAGACCCGATCGGTCACGCTCACCGCCCCGGG GAGGCACGAGCACGCTCGCTGGGTGCTGGCGCTGGAAGAGGCCCAGGGCT GGACGGAGAAGCGAGAACGAGAGGTGACCGTCACCGACGATTTTGAGCGC ACCCTGGGCTGGTCACGTAACTCCGCCGCGGCCCCGGGCTTCGCCCACGT CGAGACCCGATCGGTCACGCTCACCGCCCCGGGGAGGCACGAGCACGCTC GCTGGGTGCTGGCGCTGGAAGAGGCCCAGGGCTGGACGGAGAAGCGAGAA CGAGAGGCGCTGGTGGAGGAGCTTGAGCTGTCTCTGCCTTTCCGAGAGAA CGCGATCGAGCAAGTGCGGCACCAGCTGCCCGACGATAGGACGATCGAGG ACATCCTTGGAGTATCCGCCGCAAAGATGAACCCCGGATGCGTGCTCCAG GCGCTGGTGGAGGAGCTTGAGCTGTCTCTGCCTTTCCGAGAGAACGCGAT CGAGCAAGTGCGGCACCAGCTGCCCGACGATAGGACGATCGAGGACATCC TTGGAGTATCCGCCGCAAAGATGAACCCCGGATGCGTGCTCCAGAGCATG GTTTTCGATGCCGCAGAAGCAGCGGCGGCGAATGCGGCAGTGGAGGCATC GGCCGGAGCCGTAAGCTCTCCGGAGATGGCGGACACCGGGGGCGGCGGGG GCGGGCGGAAGGGCTCGATCTACGGGGCCCCCAGCTCCTCGCTGCGCGGC TTCTTCTCCATCTTCGATTCGTCGGCCCGCTCACCGCTCACCGGGGACGA CGCCAGCGGGAGCATGGTTTTCGATGCCGCAGAAGCAGCGGCGGCGAATG CGGCAGTGGAGGCATCGGCCGGAGCCGTAAGCTCTCCGGAGATGGCGGAC ACCGGGGGCGGCGGGGGCGGGCGGAAGGGCTCGATCTACGGGGCCCCCAG CTCCTCGCTGCGCGGCTTCTTCTCCATCTTCGATTCGTCGGCCCGCTCAC CGCTCACCGGGGACGACGCCAGCGGG back to top
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