mRNA_P-fluviatile_contig22.4803.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.230e-22 Identity = 63/109 (57.80%), Postives = 68/109 (62.39%), Query Frame = 2
Query: 20 RVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQLGGDPFKVPKAPVVGGTD 346
RVGS DSG+ P VS GAA+FGSIG+GSGA GSQSF PP PSS+WW ASGNTLIPGAGISD GE+LG PFKV KAPV GTD
Sbjct: 113 RVGSSGLLDSGLTPDVSTVHRSSVGAANFGSIGIGSGAPGSQSF--------------FPPPSAPSSEWWGHAASGNTLIPGAGISDTGEKLGRSPFKVFKAPVFEGTD 207
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 6.490e-20 Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 2
Query: 8 VSSMRVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQLGGDPFKVPKAPVVGGTD 346
+SS+ VGS S A++G+N H + + AG SFGS+G+GS A GSQSF+ XXXXXXXXX P PT SS+WW++VASG TLIPGAGI++ GE LG P KVPKAPV G+D
Sbjct: 1 MSSVGVGS-SVANTGLNSHDTAVNRSSAGVTSFGSVGMGSRALGSQSFIPGXXXXXXXXXXXXXPAPTASSRWWENVASGTTLIPGAGITEPGENLGRSPLKVPKAPVFDGSD 112
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KW19_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW19_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.900e-17 Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2
Query: 47 SGVNPHVSVKSFLYAGAASFGSIGVGSGAS-GSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQ 292
SG+NP V + AGAASFGSIG+GSGA+ G SFV SS+PP PTPSS+WW+SVASGNTLIPGAG +DAGE+
Sbjct: 104 SGLNPDVFAVNRSSAGAASFGSIGIGSGAAVGQSSFVSGTVGGAFRSQSSVPPAPTPSSRWWESVASGNTLIPGAG-TDAGEK 185
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.220e-17 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V IGGVTCEV
Sbjct: 289 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCEV 344
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 6.970e-17 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCE 783
D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V IGGVTCE
Sbjct: 272 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCE 326
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 7.100e-17 Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCE 783
D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V IGGVTCE
Sbjct: 289 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCE 343
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KAX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX9_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.290e-16 Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
D++ +++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V IGGVTCEV
Sbjct: 362 DSIHEHSTLKKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCEV 417
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5JNA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA7_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.450e-15 Identity = 45/85 (52.94%), Postives = 49/85 (57.65%), Query Frame = -3
Query: 19 MPAPGISVFPLATLSHHLLDGVGSGGMEDWLPKAPFPVPRTKXXXXXXXXXXPIEPKLAAPAYRNDFTDT*GFTPESARLILPTR 273
MPAPGISVFPLA HH LDG GGM+DWLP AP P+P IEPK A P+ DT GF PE R +LPTR
Sbjct: 1 MPAPGISVFPLAACPHHSLDGADGGGMKDWLPGAPLPIP--------------IEPKFATPSEERFAVDTSGFKPEPKRPLLPTR 71
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 5.930e-15 Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 613 SDDAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
SDD + K V K VEDW ADTG AFHMT SLSCMKD+KPC K+VN IGGV+CEV
Sbjct: 96 SDDMILK---AVNKSRYVEDWYADTGTAFHMTDSLSCMKDLKPCHKSVNGIGGVSCEV 150
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 7.020e-15 Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query: 619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
D++R+++ L +KD C+EDW ADTG AF+MT SLSCMKDV PC V IGGVTCEV
Sbjct: 234 DSLREHSTLTKKDRCIEDWYADTGTAFNMTDSLSCMKDVNPCHNKVKGIGGVTCEV 289 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig22.4803.1 >prot_P-fluviatile_contig22.4803.1 ID=prot_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp MRVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLGTGback to top mRNA from alignment at P-fluviatile_contig22:848981..849768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig22.4803.1 ID=mRNA_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=788bp|location=Sequence derived from alignment at P-fluviatile_contig22:848981..849768+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig22:848981..849768+ >mRNA_P-fluviatile_contig22.4803.1 ID=mRNA_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig22:848981..849768+ (Porterinema fluviatile SAG_2381)back to top |