mRNA_P-fluviatile_contig18.3145.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3145.1
Unique NamemRNA_P-fluviatile_contig18.3145.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 3.060e-105
Identity = 164/220 (74.55%), Postives = 188/220 (85.45%), Query Frame = 2 
Query:  434 MVASKMLFVTSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            MVA+++   ++ATL+ASSTAFVAP+AVRS APA+  S LKMSAGSDYVATLPGAPF DGK+FDPL   DGA P +IKKWREAEIKHGRVAMLA+LGVLVAEQ+HPLFMGP++IGPAVDHFQEISA++P FW  S+  +A IE+NTI  AF  PS VTGEG LKE+Y PGDLGFDPLN+KP+ E AL+ MKTKELNNGRLAMIG AGMLVQEL+ PA ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 4.460e-105
Identity = 166/221 (75.11%), Postives = 189/221 (85.52%), Query Frame = 2 
Query:  434 MVASKMLFV-TSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            MVAS  +F+ T+ATL+ASSTAFVAP+AVRS APA+  S LKMSAGSDYVATLPGAPF DGK+FDPL   DGA P EIK WREAEIKHGRVAMLA +GV+VAEQ+HPLFMGP++IGPAVDHFQEISA+FP FW  S+  +A IE+NTI KA+A+PS VTGEG L++EYSPGDLGFDPLN+KPK +  L  M+TKELNNGRLAMIG AGMLVQELV PA ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 7.440e-101
Identity = 161/219 (73.52%), Postives = 181/219 (82.65%), Query Frame = 2 
Query:  434 MVASKMLFVTSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATIL 1090
            MVAS+M   T+A L+ASSTAFVAP+AVRS APA+  S LKMSAGSDYVATLPGAPFSDGK+FDPL   DGAAP +IKKWREAEIKHGRVAMLA+LG+LVAE++HPLFMG + IGPA+ HFQEISA+FP FW  S+  +A IE+NTI  AF  PS VTGEG LKE+Y PGDLGFDPLN+KP  E AL+ MKTKELNNGRLAMIG AGML QELV    IL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.550e-90
Identity = 150/221 (67.87%), Postives = 177/221 (80.09%), Query Frame = 2 
Query:  434 MVASKMLFV-TSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            M AS  +F+ T+ATL+ASS AFV P+AVRS APA+  S LKMSAG+DY+ATLPGA   +GK+FD L   DGA P EIK WREAEIKHGRVAMLA +GV+VAEQ+HP FMGP++IGPAVDHFQEI+A+FP FW  S+  +A IE+NTI+KA+A+PS VTGEG L++EYSPGDLGFDP  IKPK +  L  M+ KELNNGRLAMIG  GMLVQELV    ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 3.730e-81
Identity = 145/220 (65.91%), Postives = 159/220 (72.27%), Query Frame = 2 
Query:  434 MVASKMLFVTSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            MVAS+M   T+ATL+ASSTAFVAP+AVRSV       GLKMSAGSDYVATLPGAPFSDGK+FDPLG  DGAAP +IKKWREAEIKHGRVAMLA+LGV+VAE                            FW  S+  +A IE+NTI  AF  PS VTGEG LKE+Y PGDLGFDPLN+KP  E AL+ MKTKELNNGRLAMIG AGML QELV PA ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 4.070e-78
Identity = 120/160 (75.00%), Postives = 137/160 (85.62%), Query Frame = 2 
Query:  611 KVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATIL 1090
            K+FDPLG  DGA   +IK WREAEIKHGRVAMLA+LGVLVAE++HP FMGP++IGPAVDHFQEISARFP FW  S+  LA+IE+NTI KA+A+PSFVTGEG L++EYSPGDLGFDPLN+KP  + AL TM+TKELNNGRLAMIG AG LVQELV P  IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 2.900e-77
Identity = 120/161 (74.53%), Postives = 136/161 (84.47%), Query Frame = 2 
Query:  611 KVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            ++FDPLG  DGAAP +IKKWREAEIKHGRVAMLA+LGV+VAEQ+HP FMGP++IGPAVDHFQEISA+FP FW  S+  +A +E+NTI  AF  PS VTGEG LKE+Y PGDLGFDPLN+KP  E AL+ MKTKELNNGRLAMIG AGML QELV PA ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 6.820e-76
Identity = 118/181 (65.19%), Postives = 147/181 (81.22%), Query Frame = 2 
Query:  551 KMSAGSDYVATLPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            +MSAGSDYV+TLPGAPF+DGKV+DP+G    A P++IKKWREAEIKHGRVAMLA++GVLVAE FHPLF+GP++IGPA+ HF+EI+ARFP FW L++  +A +E+  I   FA+   VTGEG ++ +Y PGDLGFDPL + P+ E  LN MKTKELN+GRLAMIG  GM+VQELV+P  I G
Sbjct:   91 RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.270e-75
Identity = 167/392 (42.60%), Postives = 185/392 (47.19%), Query Frame = 2 
Query:  434 MVASKMLFVTSATLVASSTAFVAPIAVRSVA-PAACPSGLKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------VFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATILG 1093
            MVAS+M   T+ATL+ASSTAFVAP+AVRSVA      S L MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           +FDPLG  DGAAP +IKKWREAEIKHGRVAMLA+LGV+VAEQ+HP FMGP++IGPAVDHFQEISA+FP FW  S+  +A IE+NTI  AF  PS VTGEG LKE+Y PGDLGFDPLN+KP  E AL+ MKTKELNNGRLAMIG AGML QELV PA ILG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.060e-68
Identity = 125/224 (55.80%), Postives = 160/224 (71.43%), Query Frame = 2 
Query:  434 MVASKMLFVTSATLVASSTAFVAPIAV--RSVAPAACPSGLKMSAGSDYVATLPGAPF---SDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVAEQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAFAQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLAMIGAAGMLVQELVKPATIL 1090
            MV S++   T+ATL+ASS AFVAPIA    S+A  A  S  KM+AGSDY A+LPGAPF   ++GK FDP G      P+ IKKWREAE+KHGRV+MLAA+G+LV+E FHPLFMGP +IGPAV+H Q+I+  +P FW  S+ ++A IE  TI+ A+   S VTG G+LK EY PGDLGFDPL + PK  +    ++++EL+ GR AMIG  GM+VQE+V    IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI3.060e-10574.55Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI4.460e-10575.11Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI7.440e-10173.52Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.550e-9067.87Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE3.730e-8165.91LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7Q7_ECTSI4.070e-7875.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.900e-7774.53Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI6.820e-7665.19Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE5.270e-7542.60LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQG7_ECTSI1.060e-6855.80Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:407253..410726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue2.2e-90
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal peptide
Exons4
Model size2112
Cds size669
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3145.1prot_P-fluviatile_contig18.3145.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 408263..410293 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.1887507-UTR-P-fluviatile_contig18:407252..4082621622815753.1887507-UTR-P-fluviatile_contig18:407252..408262Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 407253..408262 -
1693563189.419853-UTR-P-fluviatile_contig18:407252..4082621693563189.419853-UTR-P-fluviatile_contig18:407252..408262Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 407253..408262 -
1622815753.247922-UTR-P-fluviatile_contig18:410293..4107261622815753.247922-UTR-P-fluviatile_contig18:410293..410726Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 410294..410726 -
1693563189.4702003-UTR-P-fluviatile_contig18:410293..4107261693563189.4702003-UTR-P-fluviatile_contig18:410293..410726Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 410294..410726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.2006245-CDS-P-fluviatile_contig18:408262..4085441622815753.2006245-CDS-P-fluviatile_contig18:408262..408544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 408263..408544 -
1693563189.432909-CDS-P-fluviatile_contig18:408262..4085441693563189.432909-CDS-P-fluviatile_contig18:408262..408544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 408263..408544 -
1622815753.2138069-CDS-P-fluviatile_contig18:408940..4090241622815753.2138069-CDS-P-fluviatile_contig18:408940..409024Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 408941..409024 -
1693563189.442722-CDS-P-fluviatile_contig18:408940..4090241693563189.442722-CDS-P-fluviatile_contig18:408940..409024Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 408941..409024 -
1622815753.2234774-CDS-P-fluviatile_contig18:409438..4095611622815753.2234774-CDS-P-fluviatile_contig18:409438..409561Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 409439..409561 -
1693563189.4519958-CDS-P-fluviatile_contig18:409438..4095611693563189.4519958-CDS-P-fluviatile_contig18:409438..409561Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 409439..409561 -
1622815753.2352524-CDS-P-fluviatile_contig18:410113..4102931622815753.2352524-CDS-P-fluviatile_contig18:410113..410293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 410114..410293 -
1693563189.4606042-CDS-P-fluviatile_contig18:410113..4102931693563189.4606042-CDS-P-fluviatile_contig18:410113..410293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 410114..410293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3145.1

>prot_P-fluviatile_contig18.3145.1 ID=prot_P-fluviatile_contig18.3145.1|Name=mRNA_P-fluviatile_contig18.3145.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=223bp
MVASKMLFVTSATLVASSTAFVAPIAVRSVAPAACPSGLKMSAGSDYVAT
LPGAPFSDGKVFDPLGFCDGAAPKEIKKWREAEIKHGRVAMLAALGVLVA
EQFHPLFMGPNHIGPAVDHFQEISARFPAFWGLSIAVLAIIEFNTIQKAF
AQPSFVTGEGDLKEEYSPGDLGFDPLNIKPKTEDALNTMKTKELNNGRLA
MIGAAGMLVQELVKPATILGDM*
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mRNA from alignment at P-fluviatile_contig18:407253..410726-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3145.1 ID=mRNA_P-fluviatile_contig18.3145.1|Name=mRNA_P-fluviatile_contig18.3145.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3474bp|location=Sequence derived from alignment at P-fluviatile_contig18:407253..410726- (Porterinema fluviatile SAG_2381)
GTTTTTTAAGTTCGAATCTGAAGAGTTTTTGAAAAAGCCACCGATGCCTC
TTTCCTCTAGCGCCAATGGCTGTTGCCTCTGTTCTCTCTTCCCGCCTCAG
CTGTCCAGCACTTGGTCCGTTGATACGCCAATGCTGATCGCAGTTCGAAA
CAGGAAGTGGTGAGGCCACGGTGCGCTCATAGAACTCAGGGTGCACGTGA
TCCGACGTTTTTCCAGAACAAAAATGGATCGTCCGCCGACCCACGTGCGT
GACGTGTATTCCGGCGCCCTTGTGTGCCTCGGCTGACTCATGCGCGTTCG
AGAAATCTCCCGGGGAGGGCACCGCTCTGCCACCCTACTCAGTTCATAAT
CAGACCATCTCACAGTCAGCAAATCCAGCTCTTTGTGCCTCCCACCTTTC
TCAAACTTCCTACCAAAGCTTCTATCAGTAAACATGGTCGCCAGCAAAAT
GCTCTTCGTGACTTCCGCTACCCTCGTAGCCTCGTCCACGGCATTCGTGG
CGCCCATAGCCGTGCGATCCGTCGCGCCCGCCGCGTGTCCGTCGGGCCTG
AAGATGAGCGCTGGATCAGACTACGTGGCCACCCTACCCGGCGCACCCTT
CTCCGACGGGAAGGTAGGTAGCTACCGTAGGTGTTAATCACTGCTGTCCG
TCGTTGCTTTACTGCGAGTTTCGGAGGTTGAGCATCTAACTGCGCTTTCG
AACATGGTGGTAAGGCCCGCTTCCACTAGTCGTTTAACACGCGCATTGGG
CGTACGCGAATCTCGGACTCTGTGGTGGCACCTGGCTACAATGCTGTCAG
TCGTCAATGTGCGTCGTGGTTCTCTATAGTTCTGCATGGAATTCTCTCAG
AAGGCTTGAAGCGAATACAGACTAAAATGCAGGCTCCTCCTGAAGATTCA
GGCCGCGCGCATTCTTCAACCCTGTGACTACTTATACTTTGGCGCCCGAC
TCGCATGAAACTCCCGCAGACGCGGGCATCAAACATGTGTGACTCCACCT
GGTGGACTCCCTCTGTAGACTTCGACCACACGCATGCATGGCAACTCCGT
CAGCTTTGGCTCTGGTGAAGACTTGAAAATCTTTAAACTGCTGTCCTTTC
CACTTACCTCCTATCTGACATGATGCTCTTTCTGTATCCTGACGTTATTT
CAATTGGCTCGTCAGGTCTTCGATCCGCTCGGTTTCTGCGACGGCGCTGC
CCCGAAGGAGATTAAGAAGTGGCGCGAGGCCGAAATCAAGCACGGCCGCG
TGGCCATGCTCGCGGCACTGGGTGTCCTCGTAGCCGAGGTGAGGAAGCAC
ACATGTGCACTCTCTCTCTGGTACTATGTTTCGCTGCGCACCGACTTGGT
AGCTTGAGGTATGCCGTAGTTTTGAAACCTCATAGTTGCAGAGTAGTTAA
CAAATTTGGGCCAGTATCCATGTTGCACCTGATTCAGTACCCCTGTACGT
CAGTGTCTACAGCGTGAGTCGTGAGAGATCCACTGGCATATGTTGCAGCG
TATTGGCTTGTGGACTCTGTTGACAGACGTCATTAGTGGCCCCGGACAGA
GGCGACCAATTACGGGCAAGGGTCATGAAGATTTATGCGTCTAGAATCTT
CTGCTCACAGCCGCCTGTCCACACTGCCAAGATGATCTGACCAAATGCTG
CAAACCGCCATACGCCCCCTTCTTGTGATCGATGTTTACTTCGACCCTTT
AGCAATTCCACCCTCTCTTCATGGGCCCTAACCACATCGGCCCTGCCGTG
GACCACTTCCAGGAGATCAGCGCTCGGTTCCCAGCGGTGAGGATCTATTC
AACCGAGTGCAAAGGGTTATGCTATGACGGCTGCTTTCGAGAGTTCTTGG
GTGATACGATGACACCGTGCCACTACCCTAAGGTTGTTTATGTCACCAAC
GGGCAGTTTTTGTAACGCGATGATACTCCTGCTGCCTGTGTACTGCGCAT
CAACGCGCCACGACACGAGCTCGTAGAAAATACTTTCCCGACTCATGTTC
CCGAAGTGTTGGTTGTGGAACACAGGTGTCTGGGGATGGTGGCAGCAGCT
TAGCTTTCGGCTGGTGTAGGTAATGAATTCCGCGCGCGAACGCTGCCACC
GTTGTGCAATATTTCGGACGAAGAACCTGACGCGCAGCCACTCCTCCTTC
ACTTGACCGGCTGTGCCGATCGACTCTCGCAGTTCTGGGGGCTTTCAATC
GCAGTCTTGGCCATCATCGAGTTCAACACGATTCAAAAAGCCTTTGCCCA
GCCCAGCTTCGTCACCGGCGAAGGCGATCTCAAGGAGGAGTACAGCCCTG
GAGACCTCGGCTTCGACCCCCTCAACATCAAGCCCAAGACCGAGGACGCT
CTCAACACGATGAAGACCAAAGAACTCAACAACGGCCGCCTGGCCATGAT
CGGCGCCGCCGGCATGTTGGTGCAGGAGCTCGTGAAGCCGGCCACAATCC
TCGGCGACATGTAAGAAGTGTCGGCTAGTGTGAGGTGATAGCTTGCACCG
ATATCTTGCTTATCAAAACCACATCTATGATTGCCTGCAGCGAATGCTTC
GGACCATGAGTCAGCACAAGTGGTGGGAATTCGTGGAAGAGATAAGCGTG
TGCATAATTGCACGGATGACGGGTGTATCAGAGATCGAAGAAGGTCGCTC
GGGATCGATGTTCTGCTGGCGTCGCCTCTTTGTATATTATGGTTGTCTTG
CGTCCCTTGCACTTTTGTACGCGTGAACGAAGAGGAATATTGCCTCACGT
TATTTTGTGGATAATTGAGGTGACTAATGAGCAATTTTGGTGGATGATTC
TCTCGTGGACTTTTGAATTTTGGCGTCGGTGTAACTGATATGAAATATGT
TTGTCTTCCGAGTGTTTATGATAGGTTGAAATCGCGAAGCATGAGAGAAC
ACGAAAATGAGAGAAGAGAGATGTGAACTCCGCCGTTCGTTGAAGTAAGA
AATCGTAAGAGATCGGTTAGAGGGTCTCAGGATGGGGGACCCTCCTGTGT
GACCACCGATCGGAACTCTGGGGGAATTCTGCTGCTGCTTGCCGTTGGCG
GAGCAACGTCTACGCCTCTGATGCACTTTTCCGGGCCTGCATGTGTCATG
ATAATTCAGCCGGCATGTATGCCATCGATGAAAATGTTGCTGTCACTATT
ATTCAGGGTAGCGAAATGCTCGCAGCGCACTTCGTTGCCTTAGTCCGGTC
AAGGTGTTCCGAGAAGTATCGGCAAATGTTCGGAAGAGGATGTGTAGGCT
GGGCACACGTCGCAGAGCAGAGCGACGACGCGTGATACTGACGGCGTGGC
TGTGTTTATGGACGAGGTTTAAGGGCCTGTTCGTTTGAGTATGAGGATTG
CGTGAGTCGGACGGGAGCGTGTGTGCATCCTGCAACTAAGACGGATGAAA
GACGTTGTTGCGATCAATTTCAAATCCAATCTGCTTGAAATACACTCGAT
TAGCATTCAGCCTTTCGGTCATCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:407253..410726-

>mRNA_P-fluviatile_contig18.3145.1 ID=mRNA_P-fluviatile_contig18.3145.1|Name=mRNA_P-fluviatile_contig18.3145.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1338bp|location=Sequence derived from alignment at P-fluviatile_contig18:407253..410726- (Porterinema fluviatile SAG_2381)
ATGGTCGCCAGCAAAATGCTCTTCGTGACTTCCGCTACCCTCGTAGCCTC
GTCCACGGCATTCGTGGCGCCCATAGCCGTGCGATCCGTCGCGCCCGCCG
CGTGTCCGTCGGGCCTGAAGATGAGCGCTGGATCAGACTACGTGGCCACC
CTACCCGGCGCACCCTTCTCCGACGGGAAGATGGTCGCCAGCAAAATGCT
CTTCGTGACTTCCGCTACCCTCGTAGCCTCGTCCACGGCATTCGTGGCGC
CCATAGCCGTGCGATCCGTCGCGCCCGCCGCGTGTCCGTCGGGCCTGAAG
ATGAGCGCTGGATCAGACTACGTGGCCACCCTACCCGGCGCACCCTTCTC
CGACGGGAAGGTCTTCGATCCGCTCGGTTTCTGCGACGGCGCTGCCCCGA
AGGAGATTAAGAAGTGGCGCGAGGCCGAAATCAAGCACGGCCGCGTGGCC
ATGCTCGCGGCACTGGGTGTCCTCGTAGCCGAGGTCTTCGATCCGCTCGG
TTTCTGCGACGGCGCTGCCCCGAAGGAGATTAAGAAGTGGCGCGAGGCCG
AAATCAAGCACGGCCGCGTGGCCATGCTCGCGGCACTGGGTGTCCTCGTA
GCCGAGCAATTCCACCCTCTCTTCATGGGCCCTAACCACATCGGCCCTGC
CGTGGACCACTTCCAGGAGATCAGCGCTCGGTTCCCAGCGCAATTCCACC
CTCTCTTCATGGGCCCTAACCACATCGGCCCTGCCGTGGACCACTTCCAG
GAGATCAGCGCTCGGTTCCCAGCGTTCTGGGGGCTTTCAATCGCAGTCTT
GGCCATCATCGAGTTCAACACGATTCAAAAAGCCTTTGCCCAGCCCAGCT
TCGTCACCGGCGAAGGCGATCTCAAGGAGGAGTACAGCCCTGGAGACCTC
GGCTTCGACCCCCTCAACATCAAGCCCAAGACCGAGGACGCTCTCAACAC
GATGAAGACCAAAGAACTCAACAACGGCCGCCTGGCCATGATCGGCGCCG
CCGGCATGTTGGTGCAGGAGCTCGTGAAGCCGGCCACAATCCTCGGCGAC
ATGTAATTCTGGGGGCTTTCAATCGCAGTCTTGGCCATCATCGAGTTCAA
CACGATTCAAAAAGCCTTTGCCCAGCCCAGCTTCGTCACCGGCGAAGGCG
ATCTCAAGGAGGAGTACAGCCCTGGAGACCTCGGCTTCGACCCCCTCAAC
ATCAAGCCCAAGACCGAGGACGCTCTCAACACGATGAAGACCAAAGAACT
CAACAACGGCCGCCTGGCCATGATCGGCGCCGCCGGCATGTTGGTGCAGG
AGCTCGTGAAGCCGGCCACAATCCTCGGCGACATGTAA
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