mRNA_P-fluviatile_contig15.2406.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig15.2406.1 vs. uniprot
Match: D7G5P7_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5P7_ECTSI) HSP 1 Score: 306 bits (783), Expect = 4.990e-83 Identity = 159/259 (61.39%), Postives = 184/259 (71.04%), Query Frame = 1
Query: 277 AIISAMTLSRVTASSSVANHSGVAGTAGVGFSLRDEGYGSAATTGSRPGSRRLDFCSGDSDCQGSAAEMEALEADGKAISCDPACEDTGSDVFGGTWCNHFGLGGCRACDVYNCARAFGSCVPCNGQLPEPTRTSAPLTPGET-PPLSPDATEGPFA--SGECSVGACEALASDSDQSYISGNDLTLYCDGKCADTPTDPFGGLWCNFRGLGQLCRACRADNCVGWTMSETCLPCDELQDTLAPAQTPAPSELAITPVP 1044
A +SAMTLS+ + GT GF LR G G+ +RRLD CS DSDCQGS A+MEAL+ +GK I CDPACEDTG+D+FGGTWCNHFGL GCRACDVYNC + G+CVPCNG+LPE T T AP G T P+SP T+ PF + C+ ACE A +D SYI N LTLYCD KC+DTP+DPFGGLWCN RGLGQLCRACRADNCVGWT +TCLPC+ELQ+TL P+ TPAPS+L TPVP
Sbjct: 2 AFVSAMTLSQAS------------GTGAGGF-LRS-GVARITQAGTGQVARRLDACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEGSSGACVPCNGELPEET-TPAPQEEGLTLAPISPGETDPPFPIDASSCTAAACEDNADSADLSYIDDNSLTLYCDDKCSDTPSDPFGGLWCNMRGLGQLCRACRADNCVGWTEDDTCLPCNELQETLPPSVTPAPSDLEATPVP 245
BLAST of mRNA_P-fluviatile_contig15.2406.1 vs. uniprot
Match: A0A6H5KFS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS6_9PHAE) HSP 1 Score: 211 bits (538), Expect = 1.400e-52 Identity = 158/364 (43.41%), Postives = 209/364 (57.42%), Query Frame = 2
Query: 1835 PTSSTMKASFEFAGVSGKTQDELQADLEAGMAEAIGGS-----AAVNVAIDDVT-PVAGAARRARVRGRRLQQGATVCSLDNGDTCNVTATATVTYDADADGPSGARSARGVDSLSKKENLQTLANSAGVEGSDLIVEGLSVSADDASPVVDASGTEGGLMGQNISSGSSEGVGNYWLFIVATILLLALWMCCFCTAFQRYRKSVEDEQQNDPYDGSMPASNPRWGEDK-KSIDQKLGRSAPDTGDSERVATDDRMDDVVLRDMFMSQRNMQAHAGSRPPSGLGKALEEIPEEHSNSLGSSSSRELREGEGASGGDEASVAATAAGAANSALPHASAVPSGRQLLSRGKQRSTGSSSFADQLVG 2905
P S+TM AS E AGV G+T++ELQADLE GMAEAI S VNV+IDD++ P + RR RVRGRR Q T C L++GDTC V ATATV Y + AD SG SARGVDS+S KENLQ +A +AGVEGSDL + L VSAD+++ V+D+S T+G ++GQNI S NYWLFI+A LLL W+CC C A+QRY KS ++Q+D +D S + RW DK + GR +++ ++D V++D+ Q EG G D++ ++A AAGA + PSGR +LSRG+Q+ST +SSF+D+LVG
Sbjct: 487 PVSATMTASLELAGVFGRTEEELQADLEEGMAEAISDSDDGVPRTVNVSIDDLSVPTDESTRRTRVRGRRRLQE-TECVLEDGDTCTVKATATVVYSSGADDDSGGSSARGVDSISNKENLQKIALAAGVEGSDLTLGSLIVSADESNQVLDSSETDG-VVGQNIVSSDGADASNYWLFILAAALLLXXWLCCLCWAWQRYNKS--QDEQDDTHDDSTTGA--RWAGDKHRDSSPYKGRGV--------ASSNQQLDTAVVQDIISQQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXPEGGVG-DQSLISAAAAGAGSMGKVR----PSGRHILSRGQQKST-NSSFSDELVG 824
BLAST of mRNA_P-fluviatile_contig15.2406.1 vs. uniprot
Match: A0A6H5KAD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD4_9PHAE) HSP 1 Score: 154 bits (389), Expect = 2.990e-38 Identity = 88/149 (59.06%), Postives = 101/149 (67.79%), Query Frame = 1
Query: 253 RGRSLAWTAIISAMTLSRVTASSSVANHSGVAGTAGVGFSLRDEGYGSAATTGSRPGSRRLDFCSGDSDCQGSAAEMEALEADGKAISCDPACEDTGSDVFGGTWCNHFGLGGCRACDVYNCARAFGSCVPCNGQLPEPTRTSAPLTPG 699
RGR+LA TA +SAMTLS+ + GT GF LR G A G +RRL CS DSDCQGS A+MEAL+ +GK I CDPACEDTG+D+FGGTWCNHFGL GCRACDVYNC + G CVPC+G+LPE T T APL G
Sbjct: 82 RGRALAGTAFVSAMTLSQAS------------GTGAGGF-LRS-GVARIAQAGIGHVARRLGACSSDSDCQGSDADMEALDNEGKTIFCDPACEDTGTDIFGGTWCNHFGLEGCRACDVYNCEASSGPCVPCSGELPEET-TPAPLEEG 215 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig15.2406.1 >prot_P-fluviatile_contig15.2406.1 ID=prot_P-fluviatile_contig15.2406.1|Name=mRNA_P-fluviatile_contig15.2406.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=683bp MRPPPPRHQELRSPLVLPWLPVQQWPPVLQWPLVLPWLPVQQWLLVLPWLback to top mRNA from alignment at P-fluviatile_contig15:750519..770475+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig15.2406.1 ID=mRNA_P-fluviatile_contig15.2406.1|Name=mRNA_P-fluviatile_contig15.2406.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=19957bp|location=Sequence derived from alignment at P-fluviatile_contig15:750519..770475+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig15:750519..770475+ >mRNA_P-fluviatile_contig15.2406.1 ID=mRNA_P-fluviatile_contig15.2406.1|Name=mRNA_P-fluviatile_contig15.2406.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4098bp|location=Sequence derived from alignment at P-fluviatile_contig15:750519..770475+ (Porterinema fluviatile SAG_2381)back to top |