mRNA_P-fluviatile_contig14.2209.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2209.1
Unique NamemRNA_P-fluviatile_contig14.2209.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2209.1 vs. uniprot
Match: A0A6H5L5M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M4_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 6.370e-46
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:   16 MKAELLAHPDFQIFSCVCLLLVGIYVSVMCTCWGTLSLTRVKAEYKQRRALERDYETTLQRREDMLYHIGGAQQRGEQHQAAVLEKQLLRVDGALDMLEERLRDMDARHSGKKLKI 363
            M + LLAHPD ++     LLL+GIYVSVM TCWGT+SL++VKAE+K+R+ LER YE TLQRREDMLYHIGGAQQRGE  QAAVL+KQLLRVDG LD++EERLRD+DARH  K+ K+
Sbjct:    1 MDSHLLAHPDVRVLLYSFLLLLGIYVSVMYTCWGTVSLSKVKAEFKERQDLERAYEATLQRREDMLYHIGGAQQRGEHQQAAVLDKQLLRVDGDLDLIEERLRDLDARHRSKRPKL 116
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BLAST of mRNA_P-fluviatile_contig14.2209.1 vs. uniprot
Match: A0A835YKF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-8
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   40 PDFQIFSCVCLL--LVGIYVSVMCTCWGTLSLTRVKAEYKQRRALERDYETTLQRREDMLYHIGGAQQRGEQHQAAVLEKQLLRVDGALDMLEER 318
            PDF +   V  L  L  +Y+ ++  CWGTL+       +K+RRAL+  Y+   QRR+D+LYH+  A+QRGE+ +   L+ QL  +   LD LE +
Sbjct:   14 PDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQ 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5M4_9PHAE6.370e-4670.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKF7_9STRA1.270e-838.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1801692..1804039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1168
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2209.1prot_P-fluviatile_contig14.2209.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1801707..1803237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.6329668-UTR-P-fluviatile_contig14:1801691..18017061622815619.6329668-UTR-P-fluviatile_contig14:1801691..1801706Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1801692..1801706 +
1693562473.8289423-UTR-P-fluviatile_contig14:1801691..18017061693562473.8289423-UTR-P-fluviatile_contig14:1801691..1801706Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1801692..1801706 +
1622815619.6754024-UTR-P-fluviatile_contig14:1803237..18040391622815619.6754024-UTR-P-fluviatile_contig14:1803237..1804039Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1803238..1804039 +
1693562473.875117-UTR-P-fluviatile_contig14:1803237..18040391693562473.875117-UTR-P-fluviatile_contig14:1803237..1804039Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1803238..1804039 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.645014-CDS-P-fluviatile_contig14:1801706..18018261622815619.645014-CDS-P-fluviatile_contig14:1801706..1801826Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1801707..1801826 +
1693562473.8394845-CDS-P-fluviatile_contig14:1801706..18018261693562473.8394845-CDS-P-fluviatile_contig14:1801706..1801826Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1801707..1801826 +
1622815619.6574426-CDS-P-fluviatile_contig14:1803006..18032371622815619.6574426-CDS-P-fluviatile_contig14:1803006..1803237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1803007..1803237 +
1693562473.857333-CDS-P-fluviatile_contig14:1803006..18032371693562473.857333-CDS-P-fluviatile_contig14:1803006..1803237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1803007..1803237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2209.1

>prot_P-fluviatile_contig14.2209.1 ID=prot_P-fluviatile_contig14.2209.1|Name=mRNA_P-fluviatile_contig14.2209.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MKAELLAHPDFQIFSCVCLLLVGIYVSVMCTCWGTLSLTRVKAEYKQRRA
LERDYETTLQRREDMLYHIGGAQQRGEQHQAAVLEKQLLRVDGALDMLEE
RLRDMDARHSGKKLKI*
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mRNA from alignment at P-fluviatile_contig14:1801692..1804039+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2209.1 ID=mRNA_P-fluviatile_contig14.2209.1|Name=mRNA_P-fluviatile_contig14.2209.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2348bp|location=Sequence derived from alignment at P-fluviatile_contig14:1801692..1804039+ (Porterinema fluviatile SAG_2381)
CACTCTTTTGCTGCCATGAAAGCTGAACTGCTGGCGCATCCCGACTTCCA
AATATTCTCCTGCGTCTGCCTGCTTCTAGTAGGAATATATGTATCCGTGA
TGTGCACATGCTGGGGAACGTTGTCGCTTACGAGGGTGAGTGTGTGCAGA
GAGAAGAGATAGTATCCGTGTTTTGCAGGCGTAAGGAATTCCGCCCCTCA
ACATGCTGATGGGATAAGGGAATAGCTGTAGGCCTTCGAGTGTATGATTC
CTGCGTGTTGGAAGTGCTGGATACGTGGTAATGATAGCTACCTTGGAATC
TCTCCCTCACCGTGCGATTTGTCTCCGGAGATCTACACGTGTAAGGAGAG
ATACAACGATATTGAAAACGTGTCAGCGACAGGCCATGCAGTGTTTAAGA
TCCCTCGGCCCTTCCAAACTAAAGCATTGCAATAAGGAGTGCGACACATG
TCTACTGGCTGATTTCCTTCCTTAGTTGCTCGATCCTGCTGCTTGCTTTC
TCGAGTAGGAGTCTTTCAACTTTTTTGAGCTCTCGATTACCAAATGTCGC
CAACGTCCTGCCCTATCCTCATCATGAGAACATGAGACTGGACAAGCGCA
AGACGCACCTAATAAACGTACCATGGGTGTAAATGTTTTAGTGTAGGGGG
CGCTTAGGGCAATATCTTTACAATAAGAAGTACTACGGAGTACTTGAATA
TCCAACTGTGGTGTTTGATGCGCACCCTTCCATCCCCAGTCTGGTTATTT
CTTTTGCTAGTAGCCCCGTGTGGGGAGGTTACATTCATTCTGCCGAAGCC
GTTAATATGCGGCGGCGTTCAGCACACAAATCCGTGATGCTCCAAGTGCA
ACCGCTGCGGTGCTGGAGGATGGAGGCATCTTTGTTGGCGATTGAGCTAT
CCACCGCCCCATTCCCCTCTTCCTCGGAGGAATATCCGAGCCTCCTTAGG
CACAACGCATTCGGTTGGTGTCGATCACGTTCAACGTTGATAGTATGAAA
GCCGAGGGAGCACCCCGCAATCACGCACGACATGCATCAACCCAATGCTC
AGCGTATGCTAATTACCAATCGATCAATTTACATCCGGGGCCCATCTCTG
TCACTACATAATTCATCCTACCTTCGGGCCATCGATTTGAGGGAGAACTA
ATTTTCCGCCGATGAAACCACCCCCTCCACGCGATTTCCTCGTCAACCGT
TTGGAAGGGTTGACGAATTCCGATAGCACCCTCGATTTGCGGTGACGTTC
GAGAACGCCGACACAAAGCCGCTGTCACGCCCACCTCTGTAACTGTTGCA
CAATACGCTACAAAGGTCAAAGCTGAGTATAAACAACGCCGTGCGTTGGA
GCGCGACTACGAAACGACTCTCCAGCGACGAGAAGACATGCTTTATCACA
TCGGCGGTGCTCAGCAGCGAGGAGAGCAGCACCAGGCAGCGGTGTTGGAG
AAGCAGCTGCTGCGAGTTGACGGCGCTCTGGACATGTTGGAGGAACGCTT
GAGAGATATGGATGCCAGGCACAGCGGCAAGAAGCTGAAGATATAGATTC
TAAGACCCAAATTTTACCACTGGAACCGCAAGAAATTGGGCTGAACGGAT
GCGGGGCTGCAGGAGTCTCGAGGGGCGAACAAGACGCCTGGTGGGAATTC
ATCGTGAGCCGTGAAGACAGATGTGACAATCGCTGCTGGTTTCGAGGTCG
TGCTCGGCTGATGTAAATCATAAATGATGTATAACGCAATTTTTTGCGGT
TGCCGGATGAGGGGGCAAAAGTCTGATTCTGTAGATAAAGCAACGCGAGA
CTCTGCTGCGCAAAGGGTACATCAGCGGAAAACTCAGTCCACGACGTGTG
GCGATGCTGGTGTAAAGTGTAAAGAGTGTGACCTTCGCGCCTTAAGCGTG
CCTGTCTGCACGGCATTGCAAACGACGAGCTGACGTGATGACTTTTTCTC
GGAGTGTACGAACTGTGGATGGCTACTTTTGAGCGGAAAAAAGTGGTTTT
CATCACGGATCTATTTGTTTTTTCATCGCCTGCTGCTGCTCTGTCTCATG
TCTTGCTCACGCAGGGCTCCGAAGGATTTGTGCTGAACCACAATCATGAT
GAGATCATAATGAGATTGTAGAAGGTGCAGAGTTTCGGCGAGGGCACTGG
TGACTGGTGTCAGCAACACTCCTGTCGAGCGTCTCATAAGGTCATCTAAG
AGCAGCCAGAGAGAAACGGAGGCGGGTCAAAATCTCAACTTACCCAAATG
GTTCGTCGTTTCATACACACGCCTACATTTTCCAAGATTTTTCTCGAAGG
ACCCTGCGTAGACCAGAAGACTCATGTGCCAACAATTCCAAGCGGCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1801692..1804039+

>mRNA_P-fluviatile_contig14.2209.1 ID=mRNA_P-fluviatile_contig14.2209.1|Name=mRNA_P-fluviatile_contig14.2209.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig14:1801692..1804039+ (Porterinema fluviatile SAG_2381)
ATGAAAGCTGAACTGCTGGCGCATCCCGACTTCCAAATATTCTCCTGCGT
CTGCCTGCTTCTAGTAGGAATATATGTATCCGTGATGTGCACATGCTGGG
GAACGTTGTCGCTTACGAGGATGAAAGCTGAACTGCTGGCGCATCCCGAC
TTCCAAATATTCTCCTGCGTCTGCCTGCTTCTAGTAGGAATATATGTATC
CGTGATGTGCACATGCTGGGGAACGTTGTCGCTTACGAGGGTCAAAGCTG
AGTATAAACAACGCCGTGCGTTGGAGCGCGACTACGAAACGACTCTCCAG
CGACGAGAAGACATGCTTTATCACATCGGCGGTGCTCAGCAGCGAGGAGA
GCAGCACCAGGCAGCGGTGTTGGAGAAGCAGCTGCTGCGAGTTGACGGCG
CTCTGGACATGTTGGAGGAACGCTTGAGAGATATGGATGCCAGGCACAGC
GGCAAGAAGCTGAAGATATAGGTCAAAGCTGAGTATAAACAACGCCGTGC
GTTGGAGCGCGACTACGAAACGACTCTCCAGCGACGAGAAGACATGCTTT
ATCACATCGGCGGTGCTCAGCAGCGAGGAGAGCAGCACCAGGCAGCGGTG
TTGGAGAAGCAGCTGCTGCGAGTTGACGGCGCTCTGGACATGTTGGAGGA
ACGCTTGAGAGATATGGATGCCAGGCACAGCGGCAAGAAGCTGAAGATAT
AG
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