mRNA_P-fluviatile_contig14.2136.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2136.1
Unique NamemRNA_P-fluviatile_contig14.2136.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A6H5JDH5_9PHAE (RPA43_OB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDH5_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 7.410e-97
Identity = 154/181 (85.08%), Postives = 163/181 (90.06%), Query Frame = 1 
Query:   49 MTTSPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGG-EVISVGDDIQFVVTRMHEAAGLISIEGSLEGLPQ 588
            M  SPFEE +LKMCVSLLP DIGDIYAGIRRNIYQFLMRYNE+LGGVLLAVS LSFGDGAREG I DEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASE MGEG+RFDM AR+W+R   + GG +G  EVI+VG D QFVVTRMHEAAGLISIEGSLEGLP+
Sbjct:    1 MAASPFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSNLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQR---SRGGKDGAREVIAVGADTQFVVTRMHEAAGLISIEGSLEGLPK 178
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A835Z8S8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S8_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.210e-41
Identity = 89/199 (44.72%), Postives = 121/199 (60.80%), Query Frame = 1 
Query:   43 GEMTT--SPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNK-------------VTSTHVGMLVCGIFNASV-ASELMGEGYRFDMMARQWKRGPRNNGGTE------GGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            G+ TT  SPFEE  L +C+SLLP  + DI+  IR+N+Y+ LM YN  +GGV++A+ ++   DG   G I++EMPH+HF+++A AQVFRPR G +L GRV K             V+ THV MLVCGIFNAS+ A EL G GY +     +W+R               G + + +G  + F V R+H+A GLISIEG L
Sbjct:   36 GDSTTVVSPFEEVSLALCISLLPHALSDIFGSIRKNVYKLLMHYNRDVGGVIVALGDIRMADGEHHGRIMEEMPHLHFNIEANAQVFRPRSGALLNGRVMKPPLHAAFSCVYAQVSGTHVSMLVCGIFNASIYAGELEGVGYAYSDARARWERXXXXXXXXXXXXXXXGPDAVEMGTSLDFTVRRLHQAQGLISIEGGL 234
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A4D9D057_9STRA (RPA43_OB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D057_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.060e-32
Identity = 70/171 (40.94%), Postives = 106/171 (61.99%), Query Frame = 1 
Query:   61 PFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            PF+E  +   ++LLP  +G++   I   ++  LM+YN+ +GG+LL +S++ F    R   ++ ++PH+H  V+A + VF P PG  L G V KVTSTHV +LV  +FNA++A E M E Y FD     W        GT G EV+ +G+++ F V  +HEAAGLI+++GSL
Sbjct:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHDMLMKYNQDVGGILLTLSQVRFPPSRRFASVMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYDLFNAAIAREDMPEAYAFDNDREAWV-------GTGGKEVLGLGEEVAFRVALVHEAAGLIALDGSL 194
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A6G0XIV8_9STRA (RPA43_OB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIV8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.490e-27
Identity = 71/180 (39.44%), Postives = 101/180 (56.11%), Query Frame = 1 
Query:   58 SPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSLEGLPQQKE 597
            SPF +A L M VSL P  I +   G+   + Q LM+Y E + GVLL+ + L   +    G I++E P IH  V A A VFRP PG  L   VNK+ S H+G+L+ G+FN S+A+  M  G+  +     W          E G  IS+ D+++F V ++HEA G+ISI+G+L  + Q  E
Sbjct:    3 SPFAKAKLVMSVSLAPYHIQNAKKGLEDQLSQMLMKYCEPVQGVLLSFNSLQMINPY--GHIINETPFIHVRVAADALVFRPTPGMKLSATVNKIGSNHIGLLLAGVFNVSIAATEMPSGFVHNHFEEAWVG--------EDGASISLQDEVRFKVLQVHEAHGVISIDGTLRSVKQTAE 172
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A1V9ZJD1_9STRA (RPA43_OB domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJD1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.100e-25
Identity = 67/180 (37.22%), Postives = 98/180 (54.44%), Query Frame = 1 
Query:   58 SPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSLEGLPQQKE 597
            SPF  A L M  SL P  I D   G+   +   LM+Y E + GV+LA   +   +    G I++E P+IH  V  +A VFRP+ G  L   VNKV S+H+G+L+ G+FN S+A+  M +GY        W          E G  I++  ++ F V R+H A G+ISIEGS+ G  ++++
Sbjct:    2 SPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAFDGIKLLNPY--GHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWIN--------EDGATIALESEVSFTVVRVHVAHGVISIEGSMRGSKKKRK 171
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A2D4BXV9_PYTIN (S1 motif domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV9_PYTIN)

HSP 1 Score: 114 bits (284), Expect = 3.970e-25
Identity = 69/165 (41.82%), Postives = 97/165 (58.79%), Query Frame = 1 
Query:   79 LKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            ++  VSLLP  IGD   GI + +   LMRY++ L GV+L+ S +     +  G I++E P+IH  V A A VF+PR G  L G VNK+ S HVG+L+ G+FN SVA+  + +GY  +     WK       G +G   ISVG+ I   V R+H A G+I+IE S+
Sbjct:   11 IRQPVSLLPCHIGDARLGIDQEMTALLMRYSDKLEGVILSFSNVRLEKPS--GHILNEQPYIHCKVIADALVFQPRVGMTLSGVVNKIGSNHVGLLIAGVFNGSVAASELPKGYVHNYAEDAWK-------GADG-TTISVGETITVKVARVHVAGGMIAIEASM 165
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A484EH94_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EH94_BRELC)

HSP 1 Score: 113 bits (283), Expect = 5.470e-25
Identity = 67/161 (41.61%), Postives = 96/161 (59.63%), Query Frame = 1 
Query:   91 VSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            VSL P    D  AGI +N+   LM+Y+E L GV+L+ SE+        G+IV+EMP+IH  V A A VFRP+ G +L+G VNK+ S H+GML+ G+FN SVA   +  GY  +     W          + G  I+V +D+Q  V R+H A+G+I+IE ++
Sbjct:   12 VSLSPCHAEDARAGIEQNLNDQLMQYSEPLKGVVLSFSEVQLDKPY--GVIVNEMPYIHCKVLADALVFRPKKGMILRGVVNKIGSNHIGMLIAGVFNGSVAGAELPVGYVHNYSQDCWL--------AKDGSSIAVENDVQVKVLRVHVASGMIAIEATM 162
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: W2N1L6_PHYPR (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N1L6_PHYPR)

HSP 1 Score: 113 bits (283), Expect = 5.970e-25
Identity = 69/175 (39.43%), Postives = 100/175 (57.14%), Query Frame = 1 
Query:   49 MTTSPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            M ++ F    ++  VSL P    D   GI +++ + LMRY+E+L GV+L+ S +  G     G IV+EMP+IH  V   A VFRP+ G +L+G VNK+ S HVGML  G+FN SVA   + +GY  +     W          E G  ISV D+++  V R+H A G+I+IE ++
Sbjct:    1 MASNAFVLCKVRHSVSLSPCHAVDARVGIEQDLTEQLMRYSEALQGVVLSFSNVQLG--RPYGTIVNEMPYIHCKVLTDALVFRPKEGMMLRGVVNKIGSNHVGMLFAGVFNGSVAEAELPKGYVHNYAQDCWLG--------EDGSSISVEDEVEVKVLRVHVAGGMIAIEATM 165
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: A0A5A8C9B1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C9B1_CAFRO)

HSP 1 Score: 113 bits (282), Expect = 1.790e-24
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 1 
Query:   58 SPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            SPF EAD+ M +S+ P D+      + R + Q + +Y +  GGV+LA   +   D +  G IVDEMP+IH  V A+A +FRP+PG  +   V  V++ H+G LVCG FNA+VA + +GE Y FD     W   P+   G      +  GD +   V       GL+++E SL
Sbjct:    7 SPFVEADISMRMSIPPGDVDSASGFVHRALEQCVHKYRQEFGGVMLAYDNVRMEDDS--GAIVDEMPNIHAVVLARAVLFRPQPGQEMTAVVTSVSAAHIGALVCGTFNATVAEDQLGE-YAFDAEEASWN--PKAGDGAP----VRAGDAVTLRVVACKAGRGLVTVEASL 169
[Close]
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Match: T0RQ13_SAPDV (RPA43_OB domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RQ13_SAPDV)

HSP 1 Score: 111 bits (277), Expect = 2.920e-24
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 1 
Query:   31 CVLLGEMTTSPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLAVSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVISVGDDIQFVVTRMHEAAGLISIEGSL 573
            C+       SPF  A L M  SL P  I D   G+   +   LM+Y + + GV+LA + ++  +    G I++E P+IH  V A A VFRP PG  L   VNKV S H+G+L+ G+FN S+ +  M +GY  +     W          + G  I +G ++ F V R+H+A G+ISI+GS+
Sbjct:    5 CICSRAREMSPFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITLLNPY--GHIINETPYIHVRVAADALVFRPTPGMELSAVVNKVGSNHIGLLLAGVFNVSIDAAEMPDGYTHNFHEEAWVG--------DDGVTIELGAEVAFNVLRVHQAYGVISIDGSM 175
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH5_9PHAE7.410e-9785.08RPA43_OB domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z8S8_9STRA1.210e-4144.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D057_9STRA1.060e-3240.94RPA43_OB domain-containing protein n=2 Tax=Monodop... [more]
A0A6G0XIV8_9STRA7.490e-2739.44RPA43_OB domain-containing protein n=1 Tax=Aphanom... [more]
A0A1V9ZJD1_9STRA3.100e-2537.22RPA43_OB domain-containing protein n=1 Tax=Achlya ... [more]
A0A2D4BXV9_PYTIN3.970e-2541.82S1 motif domain-containing protein n=1 Tax=Pythium... [more]
A0A484EH94_BRELC5.470e-2541.61Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W2N1L6_PHYPR5.970e-2539.43Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A5A8C9B1_CAFRO1.790e-2437.79Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
T0RQ13_SAPDV2.920e-2436.46RPA43_OB domain-containing protein n=2 Tax=Saprole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1249053..1252428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.4
Seed ortholog evalue2.3e-80
Seed eggNOG ortholog2880.D7FQC3
Preferred nameTWISTNB
KEGG rclassRC02795
KEGG koko:K03004,ko:K03234
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04152,ko04921,map00230,map00240,map01100,map03020,map04152,map04921
KEGG ModuleM00182
GOsGO:0000428,GO:0001054,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042221,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990823,GO:1990830
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsKOG4134@1,KOG4134@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03012,ko03021,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-01_006640.1
Exons4
Model size1394
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2136.1prot_P-fluviatile_contig14.2136.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1249661..1252380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.4357738-UTR-P-fluviatile_contig14:1249052..12496601622815610.4357738-UTR-P-fluviatile_contig14:1249052..1249660Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1249053..1249660 -
1693562409.079408-UTR-P-fluviatile_contig14:1249052..12496601693562409.079408-UTR-P-fluviatile_contig14:1249052..1249660Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1249053..1249660 -
1622815610.5286334-UTR-P-fluviatile_contig14:1252380..12524281622815610.5286334-UTR-P-fluviatile_contig14:1252380..1252428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1252381..1252428 -
1693562409.1264715-UTR-P-fluviatile_contig14:1252380..12524281693562409.1264715-UTR-P-fluviatile_contig14:1252380..1252428Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1252381..1252428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.452649-CDS-P-fluviatile_contig14:1249660..12499161622815610.452649-CDS-P-fluviatile_contig14:1249660..1249916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1249661..1249916 -
1693562409.089974-CDS-P-fluviatile_contig14:1249660..12499161693562409.089974-CDS-P-fluviatile_contig14:1249660..1249916Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1249661..1249916 -
1622815610.475636-CDS-P-fluviatile_contig14:1250773..12509641622815610.475636-CDS-P-fluviatile_contig14:1250773..1250964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1250774..1250964 -
1693562409.0978599-CDS-P-fluviatile_contig14:1250773..12509641693562409.0978599-CDS-P-fluviatile_contig14:1250773..1250964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1250774..1250964 -
1622815610.4952285-CDS-P-fluviatile_contig14:1251700..12519611622815610.4952285-CDS-P-fluviatile_contig14:1251700..1251961Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1251701..1251961 -
1693562409.1056194-CDS-P-fluviatile_contig14:1251700..12519611693562409.1056194-CDS-P-fluviatile_contig14:1251700..1251961Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1251701..1251961 -
1622815610.5124352-CDS-P-fluviatile_contig14:1252350..12523801622815610.5124352-CDS-P-fluviatile_contig14:1252350..1252380Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1252351..1252380 -
1693562409.116083-CDS-P-fluviatile_contig14:1252350..12523801693562409.116083-CDS-P-fluviatile_contig14:1252350..1252380Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1252351..1252380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2136.1

>prot_P-fluviatile_contig14.2136.1 ID=prot_P-fluviatile_contig14.2136.1|Name=mRNA_P-fluviatile_contig14.2136.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=246bp
MTTSPFEEADLKMCVSLLPRDIGDIYAGIRRNIYQFLMRYNESLGGVLLA
VSELSFGDGAREGLIVDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTS
THVGMLVCGIFNASVASELMGEGYRFDMMARQWKRGPRNNGGTEGGEVIS
VGDDIQFVVTRMHEAAGLISIEGSLEGLPQQKEKEKEEESARRTKSRKRQ
AESEAVSPQAEDEETAAAAAKAARKKAKKAARLAAKAAKVVKMEL*
back to top

mRNA from alignment at P-fluviatile_contig14:1249053..1252428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2136.1 ID=mRNA_P-fluviatile_contig14.2136.1|Name=mRNA_P-fluviatile_contig14.2136.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3376bp|location=Sequence derived from alignment at P-fluviatile_contig14:1249053..1252428- (Porterinema fluviatile SAG_2381)
CGGTGACACAAAAGCGGGTGAAGTGCACACTGTGTACTACTAGGCGAGAT
GACAACGTCTCCGTTCGAAGAGGCAGATGTGAGCGTCGGAATATACGGTA
TCGGGCTGCTCGCGAAATCTAATCCAGTAGCTCTATCCCACATTACACAA
CACCGCCGCACCAACATGCTCTGTGGCTGGTCGCGGTTATTCCTCCAGAT
CACCTGATATCGTGGCTGACTCGGAGCCTAAAGTACGCAACAAGCAACCA
TTTGTTGCCAGACATGAAATAACTGTTGTCAACGTCGTAGCTGGGTGTGA
GCTGCATTGGGCAGCTCGTGCAAGACGTGTTACCACACACCGCGTGCACA
AAAGACTGCGACACCTTCGATACATGCCCGCACAATCGTCTCACTAGGGA
ACACACCCGCGACGGTTGACGAATCATGCTTGCACCTTATCCGAACAACA
ATGTCGTCGCGACGAAGCTCAAGATGTGCGTCAGCCTGCTGCCGAGAGAC
ATCGGCGACATCTACGCTGGCATCCGCCGCAACATCTACCAGTTCCTCAT
GCGGTACAACGAGTCCCTCGGAGGCGTGCTCCTGGCCGTGTCGGAGCTGT
CGTTCGGCGACGGAGCAAGAGAGGGCCTCATCGTAGACGAGATGCCGCAC
ATCCACTTCGATGTCAAGGCAAAGGCGCAGGTGTTCCGTCCGCGGCCCGG
TCACGTCTTGCAAGGCCGCGTCAACAAGGTCAGTTGCGGTGTAGAGGACG
CCACCTCATAACCGATGTTAGAAGCCTTTGCTCAGCTACCGTGAACTAAG
CAACGGCTTGTTGACGCCGGGTAAATGCACGATGGAAACAAGTATTTATC
GGGGGCCAGGAGGAGTAGAATACTCTGAAGTATGAGGATCATCTGTGAAC
TCGACAGAAGACGAGGTGGATGTTAACGGTTGTATACCATTGGGGTCTCG
GTTGCACCAGTCAGCATTGTTTGGGCTCTGGCCACTTGGCATGAGAAATT
TCTTGATGCTGGACAAGAGAATCCACAGGTGTCGGGCTCCCACGATTTTT
GGCCAGTGAGTAATTTCCCAGACCTCGCAGAAAAGTTGCCAATAACATTA
CCTTTCATGTAGGCTACAGCTGATGAGAGGCGATGCTCCATACAGCAGTG
CGTTTTATTGCGTGGAAAATTCTAGCGAACGAGCAACATCAACTTGTCGT
ACAGGCAACTCTGAATCTCAAAACCGATGTTCATCAAGCACGAAACCACC
CCCGTGCGTGGAAGGTGAAGACCTGTGAATATCTGGAGACGAAATCTTGT
CAACTGATTTCGAATGCATGCGCTACTGGTCGAAGTGAAGAGTAGCGCTG
GCGGTGCCTCGAGTGTGGAAGGCATCCGTACAGAAAGCTTGATTTCCCCG
GTCAAACTAGGCTCGTTACTATTGTTTTCTTTACCCCTTGCCCGCCCCCG
TCCCCCCTTCGTAGGTTACGAGCACCCACGTAGGCATGCTTGTGTGTGGG
ATATTCAACGCGTCCGTTGCTTCGGAATTGATGGGAGAAGGTTACCGATT
CGATATGATGGCCCGACAGTGGAAGAGGGGTCCCCGCAACAATGGGGGAA
CGGAGGGTGGCGAGGTCATCTCGGTTGGAGATGACATCCAATTTGTCGTC
ACCAGGTGAAGATGATCAAGAGAATAAGAGCTTCGAAAGGCTGGCGCAGT
TCAGAGAGATGGGGCATGGGTCCATCGACAAGACACCATCACGCCATTAC
TGATTGCTTGAATTTCCAGTGTTGTGAGAATCCACTGACATTGCCCACGA
TTCGACAATCTCTAATAGTAGGCTGGGTAGCAGTGGCCCTCGATTCAGAA
CTACGTTCGCGCGTGGAGACGGCGTCGTTCATGGAGAAATTGGAGGAAGT
ACTCGTCGCGGCGCACTCACCTATTCGAGTCGAGTGGCCTCTTTTTCGCT
CTATGTTTTTTGCTCACCTTCTTTCTCTTGTCCATCGTTACCCATGGGAA
GTTTTCCCGCAAGTCATGCCCATGTCTGGGGATCGAAATTGCACACATGC
CTCGTCGAACGCTTTCGGTATAGTTTTCGTGTAGTTCTTTCCGGCGAAAG
TTGAGTACCGGTTTTCGGTAACCGCCCCGGAGGCGTTTTTTTATTGTGTG
TATACCTCTGCTAGATGTTCTCCCTTGCACATGGAACCACCGTGTCATAT
TGGTGCACCGTTGTGCATTTCTGTCAAGGGCGTTTTGTGTACCATTTCTT
CCTCTTTCTTGATTCGGAATGACGGGGAGATTTGAACGGCCCGAGCAGGC
CATCGGCCGAACCCTCAGCGAATAGGCGTTTTTCTTTGTCCTCTCCGTGT
TTTTTTGGCCCTGCCGACCCCTCCCTTTTGACAAAAAGTGTGTCGCTCGT
CAATATTCACCAAGCAGGGTATTATACGCCCCCCAGATGCTTGCTTTGCT
CCATCGAACGACATTTTGTTGACGGTGCGGCCGCCGCCGCATCGACACCA
CGCCCGGCGCAGGATGCACGAGGCGGCGGGACTGATTTCGATCGAGGGGT
CTCTGGAGGGCCTCCCGCAACAGAAGGAAAAGGAGAAAGAGGAGGAAAGC
GCCAGAAGGACGAAATCCAGGAAGCGCCAGGCAGAGTCGGAGGCAGTATC
GCCGCAGGCGGAGGACGAGGAGACCGCCGCAGCCGCCGCAAAGGCCGCGA
GGAAAAAGGCGAAGAAGGCCGCGAGATTGGCAGCGAAGGCCGCCAAGGTC
GTGAAGATGGAGTTGTAGCGACCCCTGTTTACAGTTAGTTTGACTCGTGT
TGGCGCTTTGCTGCTGCCCCTGCGGCACCGCTGTTTCTCCCGTGTTGGTT
TGGTTGAACATGAGCGCCGGGGTGTTGAAGAAGTGCAAAGGAGTCGGCGA
GCACAGAAGAATGGTATTAATGAAGGTTATGTGTTCGATGTTGCTGATAT
GGGTTGGCTCTGATTGTTGGGGTATGGTTTCTGCGGGACATTTACGGGTT
ACGTCCTCTCCCCTTTATGTTTGGAATTTTACGCGGCCGTTGGCCTCCTT
CATTCGGCGACGACACACTCTTTGTTCAATATCTCGCGAGAACCGATTCG
ATCACCACAAACTGTGCACTTAAAGCGTCGCAGACTTTTCCCGTGTTCAC
TGTCGTGACTCGTCAAGAGGAGACATAAACTAAGTTGGATTGCGCGTGTG
AAATCCAGAGCACGTTTTTGCGTGGCCACGGGACATGTTTCCGGTGCTTA
TTGCGGGTGTTACGTGGATTCAATGCCCCTGGCGCCGCCCATGGCGGTTC
AGCCGCTCGGCAGCTTTTCCCGTTTTTTTGCAGCAGACGTTAACCCTTGT
CGGCGCCCTTGCCCAGCGATCTTTTC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:1249053..1252428-

>mRNA_P-fluviatile_contig14.2136.1 ID=mRNA_P-fluviatile_contig14.2136.1|Name=mRNA_P-fluviatile_contig14.2136.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1476bp|location=Sequence derived from alignment at P-fluviatile_contig14:1249053..1252428- (Porterinema fluviatile SAG_2381)
ATGACAACGTCTCCGTTCGAAGAGGCAGATATGACAACGTCTCCGTTCGA
AGAGGCAGATCTCAAGATGTGCGTCAGCCTGCTGCCGAGAGACATCGGCG
ACATCTACGCTGGCATCCGCCGCAACATCTACCAGTTCCTCATGCGGTAC
AACGAGTCCCTCGGAGGCGTGCTCCTGGCCGTGTCGGAGCTGTCGTTCGG
CGACGGAGCAAGAGAGGGCCTCATCGTAGACGAGATGCCGCACATCCACT
TCGATGTCAAGGCAAAGGCGCAGGTGTTCCGTCCGCGGCCCGGTCACGTC
TTGCAAGGCCGCGTCAACAAGCTCAAGATGTGCGTCAGCCTGCTGCCGAG
AGACATCGGCGACATCTACGCTGGCATCCGCCGCAACATCTACCAGTTCC
TCATGCGGTACAACGAGTCCCTCGGAGGCGTGCTCCTGGCCGTGTCGGAG
CTGTCGTTCGGCGACGGAGCAAGAGAGGGCCTCATCGTAGACGAGATGCC
GCACATCCACTTCGATGTCAAGGCAAAGGCGCAGGTGTTCCGTCCGCGGC
CCGGTCACGTCTTGCAAGGCCGCGTCAACAAGGTTACGAGCACCCACGTA
GGCATGCTTGTGTGTGGGATATTCAACGCGTCCGTTGCTTCGGAATTGAT
GGGAGAAGGTTACCGATTCGATATGATGGCCCGACAGTGGAAGAGGGGTC
CCCGCAACAATGGGGGAACGGAGGGTGGCGAGGTCATCTCGGTTGGAGAT
GACATCCAATTTGTCGTCACCAGGTTACGAGCACCCACGTAGGCATGCTT
GTGTGTGGGATATTCAACGCGTCCGTTGCTTCGGAATTGATGGGAGAAGG
TTACCGATTCGATATGATGGCCCGACAGTGGAAGAGGGGTCCCCGCAACA
ATGGGGGAACGGAGGGTGGCGAGGTCATCTCGGTTGGAGATGACATCCAA
TTTGTCGTCACCAGGATGCACGAGGCGGCGGGACTGATTTCGATCGAGGG
GTCTCTGGAGGGCCTCCCGCAACAGAAGGAAAAGGAGAAAGAGGAGGAAA
GCGCCAGAAGGACGAAATCCAGGAAGCGCCAGGCAGAGTCGGAGGCAGTA
TCGCCGCAGGCGGAGGACGAGGAGACCGCCGCAGCCGCCGCAAAGGCCGC
GAGGAAAAAGGCGAAGAAGGCCGCGAGATTGGCAGCGAAGGCCGCCAAGG
TCGTGAAGATGGAGTTGTAGGATGCACGAGGCGGCGGGACTGATTTCGAT
CGAGGGGTCTCTGGAGGGCCTCCCGCAACAGAAGGAAAAGGAGAAAGAGG
AGGAAAGCGCCAGAAGGACGAAATCCAGGAAGCGCCAGGCAGAGTCGGAG
GCAGTATCGCCGCAGGCGGAGGACGAGGAGACCGCCGCAGCCGCCGCAAA
GGCCGCGAGGAAAAAGGCGAAGAAGGCCGCGAGATTGGCAGCGAAGGCCG
CCAAGGTCGTGAAGATGGAGTTGTAG
back to top