mRNA_P-fluviatile_contig13.1903.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1903.1
Unique NamemRNA_P-fluviatile_contig13.1903.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1903.1 vs. uniprot
Match: A0A6H5L3W9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3W9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.110e-27
Identity = 87/188 (46.28%), Postives = 104/188 (55.32%), Query Frame = 1 
Query:  280 MVDAMTTVLYVVVLAGWCLLVCVVLRCCNETDSHSIFFDLE-EIAISAGGPKPMT--VVDGQPVRFARVQPLIDSPTTLAGVAAASADATSAIAASQSGNGNDIGGGSAVGGGGHR---LDRLEMAPVAPAPASA---LPAAEEVWSPILALRTFVEPLASRASAAFRDINFHVSFHPPDESASGATT 816
            M D MTT LY++VL  W  L+CV+LRCC++ +  ++FFDL+ EI ++  GPKP    VVDG+P RFARVQ L  + T   G                             GG  H    LD LE+  V    A+A   LPAA+EVWSPILALRTFVEPL SRASAAFR  NFHVSF    E      T
Sbjct:    1 MADTMTTALYIIVLTAWFCLMCVILRCCSDGEPPTLFFDLDPEIDLTGAGPKPSVTAVVDGEPARFARVQILGTAATAEEG----------------------------KGGTRHEDLTLDGLEVPAVMGRTAAAGDDLPAAQEVWSPILALRTFVEPLTSRASAAFR--NFHVSFFDGQEEVGKVVT 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3W9_9PHAE1.110e-2746.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2754296..2759193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_004370.1
Exons3
Model size2408
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1903.1prot_P-fluviatile_contig13.1903.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2754575..2757913 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9384367-UTR-P-fluviatile_contig13:2754295..27545741622815579.9384367-UTR-P-fluviatile_contig13:2754295..2754574Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2754296..2754574 +
1693562331.6535623-UTR-P-fluviatile_contig13:2754295..27545741693562331.6535623-UTR-P-fluviatile_contig13:2754295..2754574Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2754296..2754574 +
1622815580.0038092-UTR-P-fluviatile_contig13:2757913..27591931622815580.0038092-UTR-P-fluviatile_contig13:2757913..2759193Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2757914..2759193 +
1693562331.6985228-UTR-P-fluviatile_contig13:2757913..27591931693562331.6985228-UTR-P-fluviatile_contig13:2757913..2759193Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2757914..2759193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9537218-CDS-P-fluviatile_contig13:2754574..27546241622815579.9537218-CDS-P-fluviatile_contig13:2754574..2754624Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2754575..2754624 +
1693562331.6651506-CDS-P-fluviatile_contig13:2754574..27546241693562331.6651506-CDS-P-fluviatile_contig13:2754574..2754624Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2754575..2754624 +
1622815579.9720726-CDS-P-fluviatile_contig13:2756511..27566411622815579.9720726-CDS-P-fluviatile_contig13:2756511..2756641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2756512..2756641 +
1693562331.674276-CDS-P-fluviatile_contig13:2756511..27566411693562331.674276-CDS-P-fluviatile_contig13:2756511..2756641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2756512..2756641 +
1622815579.9887576-CDS-P-fluviatile_contig13:2757244..27579131622815579.9887576-CDS-P-fluviatile_contig13:2757244..2757913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2757245..2757913 +
1693562331.6830401-CDS-P-fluviatile_contig13:2757244..27579131693562331.6830401-CDS-P-fluviatile_contig13:2757244..2757913Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2757245..2757913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1903.1

>prot_P-fluviatile_contig13.1903.1 ID=prot_P-fluviatile_contig13.1903.1|Name=mRNA_P-fluviatile_contig13.1903.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=283bp
MVDAMTTVLYVVVLAGWCLLVCVVLRCCNETDSHSIFFDLEEIAISAGGP
KPMTVVDGQPVRFARVQPLIDSPTTLAGVAAASADATSAIAASQSGNGND
IGGGSAVGGGGHRLDRLEMAPVAPAPASALPAAEEVWSPILALRTFVEPL
ASRASAAFRDINFHVSFHPPDESASGATTTTATAVVPAMPAGAAGAAGAV
PEAQSGGGEGGGSRDGGGWANDRFMASTFVASSESYRSTSSGGIEVSVVQ
LKHRVNGEGGGEEAGAPGPEEEMKSVDVTEVV*
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mRNA from alignment at P-fluviatile_contig13:2754296..2759193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1903.1 ID=mRNA_P-fluviatile_contig13.1903.1|Name=mRNA_P-fluviatile_contig13.1903.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4898bp|location=Sequence derived from alignment at P-fluviatile_contig13:2754296..2759193+ (Porterinema fluviatile SAG_2381)
CCATTCCGTCTGCTCCTCACTGCCACACCAACACGACTTGGCACAACCAC
GAGGTCAACTATTTGATCACAAGAGCGCCACAGGCGCGTATTGATCTGTA
TGGCTGGTGTGTTGGCTACCGGGAATGTGACTCTTGACTGTTTTTCGAAC
GGCCCTACGATCTAATCTAGACTTCTGTAAACTGCCACCTTGGAGACCGG
CAGGAGTCGGGCGAGCTATCCTGCGGCCGGAGGTGAAAGTGGAACGGAAC
GGACGCACCTTGCTTGGAAGGGATACCGAATGGTGGACGCGATGACCACT
GTACTTTATGTGGTTGTGCTCGCGGGTTGGTGAGTCTGTGAACACGGGTA
CGCGCTCATCATCGCACCTCTGCCGCCGCGTACCGCGACACTCGGCCGAA
GAGGGGTTGATCCCGCTCTTTTTTTGTCTGAAGTGCGGAGTATTCGTTGC
AGGCCGTAACACCAAGCACCGTTCTTTCTTCTCACAGAGTGTTCGTTCTC
AAAGTGTGAGCCCGTATACCACGGCGGTTTCCACGTTGCATGAATTGAAC
CGTGCTCTTGTCGGGCGAACTTTTTACAATGGTTCATCTTGCAGCGCTCT
CCGACGACACACATGAGCCGGGCAAGTTGTGCACACGACGCAGCTCTAAG
AGCTCTGTCTACGTCTGCGCTCGACACACGCGTTCTTCGACCGTAAAACG
TATCGCTGCATGTGTTGAACATCTTTCGACAACCTCTCCCTCAGCCTTTC
GTCATTTTCTCCCTACTGCTGTGGAAGGTTGGTCGCTTTCATTCAGGGCC
TTCCTGAAACATGAATCGTCCCCGATTTTCCTGTATGATCTCGGTTGTTT
GATCAAGTCTGTTCATGACAGACCACGAAAAACAGACACATCAGCGGATG
GGTAGGCTTGATGGCCATTTTCAGCAAAGAACCCCCCACAGGCCATACCA
GAGGCTGGCTATTCCCTCCCGACAGAGCTAGTCTGGTAAACTGTCGCCGA
CTACCGTGCACACGGCTGCTGTCGCGGGGAAATTCGAGAGGCACTTTGAA
GTTTCACGACCAACCCGTCCTCGTTTCCCTACCCATCTGTCCCAGCAGTT
AGCTTGAGGGGCAGATGCAACGATTGCTCTCGATGAAGCAGTCCCTCTCG
GGCATCGGCGAGTACCATGTGGTATGTGGTACATCCGTCCAGATGGAGTC
GTTTGTTTGGCGTGTGTGTGAAAATTGTTGCTGAGGGATTAGCCTACAGC
TGCCTGATTGCTGTGCGTTTCTTTTTCCTGATAGGCACGCGCTGCTGCCT
CTCCAATGCTGACGGTCTCAGAGACACAGATGGGCTGTGAGGTGAGCATG
CTGGTGGCGCAGTAGCTGCGCCAAACTTTTCTCGATTCTCTTGAAAATCA
AGAAGATCGAGAGGGGTGCTAGAGATCCGCCCCCGACTTTCTTGATTTCC
ACAGCAAGCGGCGCAACATCAAGAAAATCGGTAAATTCAAGACTTCAAGA
CAAACCATGGTTTTTTCGCTCACACCGACCCTCATCAGCTCCGTTCCTCC
GGCCCCTCTCTTGTGTACATCCAGAGCGAATTCACCATCTCAGCGAGTCC
CGAGTGCGACAACCCGGAGCCGCCCCGCGCCATCTCCTCCCCCGATCTCT
CGTCACTCGAGAATCAAAGCGGGAAGCATACAAACGTAAACACATACGAG
CAAATCCTAGAATTCCTAGCCTTCCGACCTTCGGATATTCGGAAGGGTCG
AAGATGCCGCTCGGAGCCACGTTATACGTATTTCTACCTGTCAAGCTCTG
CTCCGATCTTGGAGGAGGCGTCGGCTTGGAGTCACCCCTTGCCAAGCCAA
CGTTTCTGTCAATTTGCTTTCCAACCCTGCGGGCCCTCGAGACTTCCGGC
TACGGTTCCAACGAGCACGTGCACATGACTTCACGGAAAGCGGTTTGCCC
CCCCACCCCCGCCGCCGCCGAGTCTCAAATGAAGACAGCTCATGTCCGAT
CCTCACCACCCAATCGCCGCCCTGTCCGAGTAGCAAACATGCCTGAACCT
GCCTTTCCTACTGCGCGCGGGTCGTGCTTTACTAGTATTGCTGTATATTG
GTGAAAGAAGGGATGGCTTGGACGAAACCTTACGGTTAGCCCCTATCCGA
CGCTCTCGTCCTCTCGATTATAACCCCTCCCCTTCTTCTCTGTCGCCTTC
TCTCTCGCACCCGCAGGTGCCTTCTTGTGTGCGTTGTGCTTCGGTGCTGC
AATGAAACCGATTCGCATTCGATCTTCTTCGACCTGGAAGAGATCGCGAT
CTCCGCCGGGGGACCCAAGCCGATGACGGTCGTCGACGGTCAGCCTGTAA
GTTGAGCAGTTTGAGTGAATCCACAACCCCTTGCTTGAAGGGCTAATGTT
TTCTATGTGGGATGTGGGTTGTGTTTGGCTTGGAATTTGAAACCGGGCCT
ATACATCAACACGTTTTACGAGGATTATTCGGGGCTTCATGTCAAGTAGT
CTCCCGCGCATCCTAATCCTTAGCGATTGCGTGTTACCGGTTCTTCGTAA
ATTGAGTGACTCAAATCTGTTGAAATGTCGCAGCGGTGCCTGTGATAAGC
GCGCGGTGTTCGACAGCAAGAGCCTTGCAACAATCGGATGATGCCCTTGT
CTTTTTTTCTGACCACTTGCTGCAAGAAGCGGTCGCTACAGGCATCAGTT
TTGCGTAACCTTAACCTACAGTACCAAGCCATGTTCATTGGAGGGGAATG
GACACGTTGACCACTATGTGAGAATTTTTTTGTTGAGTATTTTCGCTCCC
TGATCGGCTCAGCCGGTGGTAGCGGCGGGAAGGATTTGTGATGTTGTATT
TCGTACTACATGATGGTCTCGCCCTCAGCCAATGTAGCGCATCCGCTTTC
GGAACTCCCGTGAATCGCTGCCCCCCCCGAACAACTCCCTCTTCGCCAGG
TGAGGTTCGCGAGGGTGCAACCCTTGATTGATTCGCCAACAACCCTAGCG
GGTGTGGCTGCCGCTAGCGCCGACGCAACATCAGCGATAGCCGCATCGCA
GAGTGGGAACGGCAACGACATCGGCGGCGGCAGTGCCGTCGGTGGCGGGG
GTCACCGGCTCGACCGCCTCGAGATGGCGCCCGTCGCGCCCGCACCAGCT
TCGGCGCTACCGGCGGCGGAGGAGGTCTGGAGCCCGATACTGGCCCTGCG
CACCTTTGTGGAGCCCCTTGCCTCGAGGGCCTCCGCGGCTTTTCGAGATA
TCAATTTCCATGTCTCGTTTCACCCCCCGGACGAGTCTGCATCCGGTGCA
ACGACGACGACTGCAACGGCGGTGGTGCCGGCGATGCCAGCAGGTGCCGC
CGGTGCAGCGGGTGCAGTACCCGAAGCACAAAGTGGCGGCGGCGAAGGCG
GCGGGAGTCGGGACGGGGGTGGGTGGGCAAACGACCGGTTCATGGCAAGC
ACTTTTGTGGCATCTTCGGAAAGTTATCGGTCCACGAGCTCGGGGGGGAT
AGAGGTATCGGTGGTGCAGCTCAAGCACAGAGTGAACGGGGAAGGAGGGG
GAGAAGAAGCCGGGGCACCAGGGCCAGAAGAAGAGATGAAAAGTGTGGAT
GTGACCGAGGTGGTTTGATTCCGGAAGACCGGTTGGTTCCAACAAGTGTT
TGTGGTCTTTCCTGCTCCATGTTTGGTTTTGTGATGAAATTGTGACGCAC
TTCCCTAGCAACTTATCTTGTTGGTGAGTGCCTTGATTTCTCTTTGTAAT
CTGCGTTCTCCGCCCAGATCTTGACCATGCGTCTTGTAGAACACGTCGCT
TGCTTCAGCTTTGTGTTTCCTCGTATTTTCTTCTCTTCTGTCCCTCGCCG
GCGACCCTTAGTGTCGTGAGTTCGTTTTGTGCGCGCGCGTGGATTAATAA
CACACGCTGGCGGCTTGCCTATTTGTATCATTTGCAGCGTTTGGGTTCCG
GGAGGTACGAGATATTGTTATACCCCCATTCTCCAGGGCCGGAGCATTAA
TCCACGCCACGTTTTGTATTTGTATCGGCAACTTTGTAAATTGTCAACCT
TGTCCCAAAACGGGAGGTTTCTGATCTTTCCCATAGAGCGATCACATTTT
ATATCACAAGGTGTGGTTCTGGACTTGTTTGTGTGCATGTGTGTGTTTGT
TGCCTGGGCACCTTGCGCGTCGATTCTCATTACAAGAGTATTCTGGACAG
AAATTAACCAACTTCGAACATTAAGTTTTTGGAGAGTCTTTGAAGTTCCC
GGCCGGAGCTGTTACAGAAGTGCCGCCGCCCGTGCTGTGTTCATCCGGAC
AATCAGATTTGATTTGTAGACTCTAAATCGTCAAGATTTTTGCTGCCTGG
TTGCGGCAGCTCTTGTGTAGATGTGTGTGCAGCGTCTTATGCAGATTCGG
GGGTAAACCCGTTAGCATCAGTGAATTTTGAGCGTGTGTAATGTCGACTT
TGGAGTTGTGTTTCTTCTGAACTTGAACTTTGGCGAATGTCGAAGAAAGG
ACGACAGCTGCGGCAGGAGCTGGTGGTTGGGTAATTGGACGGATCGATCC
CTCAGCTTTGCCAGACGATCTCGCGAAAGTCGCGTCCTTCACAGCAGTCT
CGTCAGATGTCGAAGGCCGTCGTGCCTCTCCGATTGCGACGCAAACCCTC
ATGACTTGTTGGTGGAAATGATTTCGGTATTCGGACGGAAAGCCTTTTAG
AGGACGAGTAGAAAATTACCTTGCAGCGGTTGCATGGTTGCCTATTCGCG
GCGGGTAGCTTTTCATCAACGTTTTGGACGCAAGGTCGCGTTCCAGCACA
TATCCCGTCAATGTTGTGTAGCGAGGAGCCACTCTCTGACGGACGTAGCT
ATCTTCCTGGCAGTTGCGCGGAAGCGCTTATCTAATGCGCAGTCCTTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2754296..2759193+

>mRNA_P-fluviatile_contig13.1903.1 ID=mRNA_P-fluviatile_contig13.1903.1|Name=mRNA_P-fluviatile_contig13.1903.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1698bp|location=Sequence derived from alignment at P-fluviatile_contig13:2754296..2759193+ (Porterinema fluviatile SAG_2381)
ATGGTGGACGCGATGACCACTGTACTTTATGTGGTTGTGCTCGCGGGTTG
ATGGTGGACGCGATGACCACTGTACTTTATGTGGTTGTGCTCGCGGGTTG
GTGCCTTCTTGTGTGCGTTGTGCTTCGGTGCTGCAATGAAACCGATTCGC
ATTCGATCTTCTTCGACCTGGAAGAGATCGCGATCTCCGCCGGGGGACCC
AAGCCGATGACGGTCGTCGACGGTCAGCCTGTGCCTTCTTGTGTGCGTTG
TGCTTCGGTGCTGCAATGAAACCGATTCGCATTCGATCTTCTTCGACCTG
GAAGAGATCGCGATCTCCGCCGGGGGACCCAAGCCGATGACGGTCGTCGA
CGGTCAGCCTGTGAGGTTCGCGAGGGTGCAACCCTTGATTGATTCGCCAA
CAACCCTAGCGGGTGTGGCTGCCGCTAGCGCCGACGCAACATCAGCGATA
GCCGCATCGCAGAGTGGGAACGGCAACGACATCGGCGGCGGCAGTGCCGT
CGGTGGCGGGGGTCACCGGCTCGACCGCCTCGAGATGGCGCCCGTCGCGC
CCGCACCAGCTTCGGCGCTACCGGCGGCGGAGGAGGTCTGGAGCCCGATA
CTGGCCCTGCGCACCTTTGTGGAGCCCCTTGCCTCGAGGGCCTCCGCGGC
TTTTCGAGATATCAATTTCCATGTCTCGTTTCACCCCCCGGACGAGTCTG
CATCCGGTGCAACGACGACGACTGCAACGGCGGTGGTGCCGGCGATGCCA
GCAGGTGCCGCCGGTGCAGCGGGTGCAGTACCCGAAGCACAAAGTGGCGG
CGGCGAAGGCGGCGGGAGTCGGGACGGGGGTGGGTGGGCAAACGACCGGT
TCATGGCAAGCACTTTTGTGGCATCTTCGGAAAGTTATCGGTCCACGAGC
TCGGGGGGGATAGAGGTATCGGTGGTGCAGCTCAAGCACAGAGTGAACGG
GGAAGGAGGGGGAGAAGAAGCCGGGGCACCAGGGCCAGAAGAAGAGATGA
AAAGTGTGGATGTGACCGAGGTGGTTTGAGTGAGGTTCGCGAGGGTGCAA
CCCTTGATTGATTCGCCAACAACCCTAGCGGGTGTGGCTGCCGCTAGCGC
CGACGCAACATCAGCGATAGCCGCATCGCAGAGTGGGAACGGCAACGACA
TCGGCGGCGGCAGTGCCGTCGGTGGCGGGGGTCACCGGCTCGACCGCCTC
GAGATGGCGCCCGTCGCGCCCGCACCAGCTTCGGCGCTACCGGCGGCGGA
GGAGGTCTGGAGCCCGATACTGGCCCTGCGCACCTTTGTGGAGCCCCTTG
CCTCGAGGGCCTCCGCGGCTTTTCGAGATATCAATTTCCATGTCTCGTTT
CACCCCCCGGACGAGTCTGCATCCGGTGCAACGACGACGACTGCAACGGC
GGTGGTGCCGGCGATGCCAGCAGGTGCCGCCGGTGCAGCGGGTGCAGTAC
CCGAAGCACAAAGTGGCGGCGGCGAAGGCGGCGGGAGTCGGGACGGGGGT
GGGTGGGCAAACGACCGGTTCATGGCAAGCACTTTTGTGGCATCTTCGGA
AAGTTATCGGTCCACGAGCTCGGGGGGGATAGAGGTATCGGTGGTGCAGC
TCAAGCACAGAGTGAACGGGGAAGGAGGGGGAGAAGAAGCCGGGGCACCA
GGGCCAGAAGAAGAGATGAAAAGTGTGGATGTGACCGAGGTGGTTTGA
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