mRNA_P-fluviatile_contig13.1872.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1872.1
Unique NamemRNA_P-fluviatile_contig13.1872.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1872.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.850e-61
Identity = 193/401 (48.13%), Postives = 209/401 (52.12%), Query Frame = 1 
Query:   49 EAEPGGAGSRLASLYVCLIPPLLVGVTDHPTAGVNLAIVFAMCGGLLAFSWGRLVARDMRQQARVEAAAAVXXXSRRQWQEHWRAGPAESTAAAVSGLEDGMEWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNSAVGTAGRARALHDSNRDGVRHASALSSSPRWS------------------------------------LSRDNVLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG--------NELA--------KRRLGLIYALLHSVRQVTVRWDLLDWRQLGFGIAGFAVGLTCFAIQGSSATAGWYHLWHGAWHVLAMGSAVPILRARKWGPAELVTEEDGGLWGCG 1095
            EA+  GAGSRLASLYVCLIPPLLVGVTDHPTAG NLA+VFAMC GLLA +WGRLV RD+R++A  E     XXX       HWR   AES  +A           XXXXXXXXXXXXXXXXXXXXXX                GR  AL  S R  V H  A   S  WS                                    + RD                  XXXXXXXXX                                       XXXXX  SG        NEL           RLG I+ LL S+R+V VRW LLDWRQLG G+AGFA GLTCFA+QG+SATAGWYHLWHGAWHVLAMGSAVPILRAR+WGPAE   +EDGGLWGCG
Sbjct: 1382 EADGSGAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCSGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXXG--HWR---AESAGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------GRENALSGSKRGVVNHGVAAPPSSGWSFREEEEQGDSDQNEGKEHXXXXXXXXGEGQAGDQGLVERDKAKSSSHTAGTRVLRGGGXXXXXXXXXHDNTDTSTIINDFIPSNPSSLSVLSRPRARSLGGSRRGGXXXXXGSSGWTGADVSSNELXXXXXXXXXSTRLGRIFPLLRSLRRVAVRWGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAESDPDEDGGLWGCG 1761
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BLAST of mRNA_P-fluviatile_contig13.1872.1 vs. uniprot
Match: D8LS70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS70_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.920e-61
Identity = 201/395 (50.89%), Postives = 216/395 (54.68%), Query Frame = 1 
Query:   49 EAEPGGAGSRLASLYVCLIPPLLVGVTDHPTAGVNLAIVFAMCGGLLAFSWGRLVARDMRQQARVEAAAAVXXXSRRQWQEHWRAGPAESTAAAVSGLEDGMEWDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNSAVGTAGRARALHDSNRDGVRHASALSSSPRWS-----------------------------------LSRDN-----------VLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNELAKRRLGLIYALLHSVRQVTVRWDLLDWRQLGFGIAGFAVGLTCFAIQGSSATAGWYHLWHGAWHVLAMGSAVPILRARKWGPAELVTEEDGGLWGCG 1095
            EA+ GGAGSRLASLYVCLIPPLLVGVTDHPTAG NLA+VFAMCGGLLA +WGRLV RD+R++A  E     XXX   Q   HWRA  AES A             XXXXXXXXXXXXXXXXXXXXXX                    AL  S R  V H    S S  WS                                   + RD            VLR   XXXXXX                                          XXXXXXXXXXXXXXXXXX        RLG I+ LL S+R+V  R  LLDWRQLG G+AGFA GLTCFA+QG+SATAGWYHLWHGAWHVLAMGSAVPILRAR+WGPAE   +EDGGLWGCG
Sbjct:  805 EADGGGAGSRLASLYVCLIPPLLVGVTDHPTAGANLAVVFAMCGGLLASNWGRLVRRDLRERALAEEXXXXXXXXXXQG--HWRAESAESAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------NALSRSKRGVVNHGVVASPSSGWSFREEEEEGEGEQNEEKELGKEXXXXXXXXAEDEGLVGRDRAKSSSHTAGTRVLRGGGXXXXXXHDDTDASTINNDFIPCNPSSLSVLSRPRARSLGGSRCGGGVRXXXXXXXXXXXXXXXXXXXXXXXXSTRLGRIFRLLRSLRRVAFRRGLLDWRQLGLGVAGFAAGLTCFAVQGTSATAGWYHLWHGAWHVLAMGSAVPILRARRWGPAESDPDEDGGLWGCG 1178
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJD0_9PHAE1.850e-6148.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS70_ECTSI2.920e-6150.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2400596..2401902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1097
Cds size1095
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.1582623-CDS-P-fluviatile_contig13:2400595..24012251622815575.1582623-CDS-P-fluviatile_contig13:2400595..2401225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2400596..2401225 +
1693562287.3938062-CDS-P-fluviatile_contig13:2400595..24012251693562287.3938062-CDS-P-fluviatile_contig13:2400595..2401225Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2400596..2401225 +
1622815575.173242-CDS-P-fluviatile_contig13:2401435..24019001622815575.173242-CDS-P-fluviatile_contig13:2401435..2401900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2401436..2401900 +
1693562287.4098437-CDS-P-fluviatile_contig13:2401435..24019001693562287.4098437-CDS-P-fluviatile_contig13:2401435..2401900Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2401436..2401900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1872.1prot_P-fluviatile_contig13.1872.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2400596..2401900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1872.1

>prot_P-fluviatile_contig13.1872.1 ID=prot_P-fluviatile_contig13.1872.1|Name=mRNA_P-fluviatile_contig13.1872.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=365bp
SDGGGSVTGNAGAGRAEAEPGGAGSRLASLYVCLIPPLLVGVTDHPTAGV
NLAIVFAMCGGLLAFSWGRLVARDMRQQARVEAAAAVAAASRRQWQEHWR
AGPAESTAAAVSGLEDGMEWDEEEGGDGGGGGAGGGGGGAASGAASAAGA
APNSAVGTAGRARALHDSNRDGVRHASALSSSPRWSLSRDNVLREEEEER
GEREEGGGVERPRARSCGGGRARRADSSGLQEAGGGRGGGWSADSGSEMV
LMADDEATPGGSSSGNELAKRRLGLIYALLHSVRQVTVRWDLLDWRQLGF
GIAGFAVGLTCFAIQGSSATAGWYHLWHGAWHVLAMGSAVPILRARKWGP
AELVTEEDGGLWGCG
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mRNA from alignment at P-fluviatile_contig13:2400596..2401902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1872.1 ID=mRNA_P-fluviatile_contig13.1872.1|Name=mRNA_P-fluviatile_contig13.1872.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1307bp|location=Sequence derived from alignment at P-fluviatile_contig13:2400596..2401902+ (Porterinema fluviatile SAG_2381)
AGCGATGGCGGAGGAAGCGTCACCGGGAACGCGGGAGCTGGAAGGGCAGA
GGCAGAACCCGGCGGCGCGGGATCGCGCCTCGCCTCTCTGTACGTGTGCC
TGATACCTCCACTGTTGGTGGGGGTGACGGACCATCCGACCGCGGGCGTA
AACCTGGCCATCGTGTTCGCGATGTGCGGGGGTTTGCTCGCTTTCAGCTG
GGGCAGGCTCGTGGCTCGGGACATGCGTCAGCAGGCGCGGGTCGAGGCTG
CCGCCGCGGTCGCTGCTGCTTCGCGGCGGCAGTGGCAGGAGCACTGGCGA
GCGGGACCGGCGGAGTCGACGGCCGCGGCGGTGTCGGGCCTCGAGGACGG
AATGGAATGGGACGAGGAGGAAGGAGGAGATGGTGGTGGCGGTGGGGCTG
GTGGTGGTGGTGGTGGTGCTGCAAGCGGTGCCGCCAGTGCTGCTGGTGCC
GCCCCTAATTCTGCGGTAGGGACGGCTGGGCGGGCGCGTGCTCTACACGA
CTCAAACAGAGATGGCGTGCGGCACGCGTCGGCCCTCTCGTCCTCACCCA
GGTGGTCCCTGAGCAGGGATAATGTACTCCGAGAAGAGGAGGAAGAGCGC
GGGGAGCGGGAGGAAGGAGGGGGAGTCGAGGTAAGGGCGGACAAGCCCGA
GAGGGAGTCTATGTCGCCGGTCGACGGTCGCAAGCGTTGTGGCAGTGTCG
GTGTTGGTGTTGGTGTCGGTGGTGGCAGTAGCGATCGGAGCGGGGTGCTG
CTGTTGGTAGACAATCCCGCCGGCAAAGATGCCACGCTAAGCAGCACAAA
CGATTTCCCCCCGGATTCTCTGTGTCTTTCGCTGCTGCAGCGGCCGCGAG
CCCGAAGCTGCGGTGGTGGTCGTGCTAGGCGGGCGGACTCGAGCGGGCTC
CAGGAAGCAGGAGGAGGGCGAGGCGGCGGATGGAGCGCTGACAGCGGCAG
CGAGATGGTGTTGATGGCGGACGATGAAGCCACGCCTGGTGGCAGCAGCA
GCGGCAACGAGCTAGCAAAGCGGAGGCTTGGTCTTATCTACGCGCTGCTG
CATTCCGTCAGGCAGGTCACTGTCAGGTGGGACCTGCTGGACTGGCGGCA
GCTCGGCTTCGGGATCGCGGGCTTCGCGGTCGGCCTCACGTGCTTCGCCA
TCCAGGGATCCTCGGCGACCGCCGGCTGGTACCACCTCTGGCACGGAGCC
TGGCACGTGCTGGCCATGGGGTCCGCAGTGCCTATCCTTCGCGCGCGGAA
GTGGGGCCCCGCAGAGTTGGTTACGGAAGAGGACGGCGGTTTGTGGGGGT
GCGGCGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2400596..2401902+

>mRNA_P-fluviatile_contig13.1872.1 ID=mRNA_P-fluviatile_contig13.1872.1|Name=mRNA_P-fluviatile_contig13.1872.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2190bp|location=Sequence derived from alignment at P-fluviatile_contig13:2400596..2401902+ (Porterinema fluviatile SAG_2381)
AGCGATGGCGGAGGAAGCGTCACCGGGAACGCGGGAGCTGGAAGGGCAGA
GGCAGAACCCGGCGGCGCGGGATCGCGCCTCGCCTCTCTGTACGTGTGCC
TGATACCTCCACTGTTGGTGGGGGTGACGGACCATCCGACCGCGGGCGTA
AACCTGGCCATCGTGTTCGCGATGTGCGGGGGTTTGCTCGCTTTCAGCTG
GGGCAGGCTCGTGGCTCGGGACATGCGTCAGCAGGCGCGGGTCGAGGCTG
CCGCCGCGGTCGCTGCTGCTTCGCGGCGGCAGTGGCAGGAGCACTGGCGA
GCGGGACCGGCGGAGTCGACGGCCGCGGCGGTGTCGGGCCTCGAGGACGG
AATGGAATGGGACGAGGAGGAAGGAGGAGATGGTGGTGGCGGTGGGGCTG
GTGGTGGTGGTGGTGGTGCTGCAAGCGGTGCCGCCAGTGCTGCTGGTGCC
GCCCCTAATTCTGCGGTAGGGACGGCTGGGCGGGCGCGTGCTCTACACGA
CTCAAACAGAGATGGCGTGCGGCACGCGTCGGCCCTCTCGTCCTCACCCA
GGTGGTCCCTGAGCAGGGATAATGTACTCCGAGAAGAGGAGGAAGAGCGC
GGGGAGCGGGAGGAAGGAGGGGGAGTCGAGAGCGATGGCGGAGGAAGCGT
CACCGGGAACGCGGGAGCTGGAAGGGCAGAGGCAGAACCCGGCGGCGCGG
GATCGCGCCTCGCCTCTCTGTACGTGTGCCTGATACCTCCACTGTTGGTG
GGGGTGACGGACCATCCGACCGCGGGCGTAAACCTGGCCATCGTGTTCGC
GATGTGCGGGGGTTTGCTCGCTTTCAGCTGGGGCAGGCTCGTGGCTCGGG
ACATGCGTCAGCAGGCGCGGGTCGAGGCTGCCGCCGCGGTCGCTGCTGCT
TCGCGGCGGCAGTGGCAGGAGCACTGGCGAGCGGGACCGGCGGAGTCGAC
GGCCGCGGCGGTGTCGGGCCTCGAGGACGGAATGGAATGGGACGAGGAGG
AAGGAGGAGATGGTGGTGGCGGTGGGGCTGGTGGTGGTGGTGGTGGTGCT
GCAAGCGGTGCCGCCAGTGCTGCTGGTGCCGCCCCTAATTCTGCGGTAGG
GACGGCTGGGCGGGCGCGTGCTCTACACGACTCAAACAGAGATGGCGTGC
GGCACGCGTCGGCCCTCTCGTCCTCACCCAGGTGGTCCCTGAGCAGGGAT
AATGTACTCCGAGAAGAGGAGGAAGAGCGCGGGGAGCGGGAGGAAGGAGG
GGGAGTCGAGCGGCCGCGAGCCCGAAGCTGCGGTGGTGGTCGTGCTAGGC
GGGCGGACTCGAGCGGGCTCCAGGAAGCAGGAGGAGGGCGAGGCGGCGGA
TGGAGCGCTGACAGCGGCAGCGAGATGGTGTTGATGGCGGACGATGAAGC
CACGCCTGGTGGCAGCAGCAGCGGCAACGAGCTAGCAAAGCGGAGGCTTG
GTCTTATCTACGCGCTGCTGCATTCCGTCAGGCAGGTCACTGTCAGGTGG
GACCTGCTGGACTGGCGGCAGCTCGGCTTCGGGATCGCGGGCTTCGCGGT
CGGCCTCACGTGCTTCGCCATCCAGGGATCCTCGGCGACCGCCGGCTGGT
ACCACCTCTGGCACGGAGCCTGGCACGTGCTGGCCATGGGGTCCGCAGTG
CCTATCCTTCGCGCGCGGAAGTGGGGCCCCGCAGAGTTGGTTACGGAAGA
GGACGGCGGTTTGTGGGGGTGCGGCCGGCCGCGAGCCCGAAGCTGCGGTG
GTGGTCGTGCTAGGCGGGCGGACTCGAGCGGGCTCCAGGAAGCAGGAGGA
GGGCGAGGCGGCGGATGGAGCGCTGACAGCGGCAGCGAGATGGTGTTGAT
GGCGGACGATGAAGCCACGCCTGGTGGCAGCAGCAGCGGCAACGAGCTAG
CAAAGCGGAGGCTTGGTCTTATCTACGCGCTGCTGCATTCCGTCAGGCAG
GTCACTGTCAGGTGGGACCTGCTGGACTGGCGGCAGCTCGGCTTCGGGAT
CGCGGGCTTCGCGGTCGGCCTCACGTGCTTCGCCATCCAGGGATCCTCGG
CGACCGCCGGCTGGTACCACCTCTGGCACGGAGCCTGGCACGTGCTGGCC
ATGGGGTCCGCAGTGCCTATCCTTCGCGCGCGGAAGTGGGGCCCCGCAGA
GTTGGTTACGGAAGAGGACGGCGGTTTGTGGGGGTGCGGC
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