mRNA_P-fluviatile_contig13.1858.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1858.1
Unique NamemRNA_P-fluviatile_contig13.1858.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1858.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.500e-54
Identity = 125/247 (50.61%), Postives = 140/247 (56.68%), Query Frame = 2 
Query:  332 ALQCFSCADCSVGGALSAHIEQCPPEENCCAVVSRPRTSRWGYQSSSVDRGCASSLHLECEPLDATPEMASAAD-HSKGNRQL-------HGDSRDADSQQSAPGDENI----GGPGGSKSAGGPLQRSLCCSTDLCNGLEDPRTEGHRRSEEYLRFLMEGNPRK---SGNHPPGTSFGXXXXXXXXXXXXDLGVGTVAMTXXXXXXXXXXXXXXRGGVVGGSRFATVLVIVGTFSQVLWLLSSLIE 1027
            ALQ FSC DCSVGGALSA  +QCPP E  CA VSRPRTS   YQSSSVDRGCASSLH+ CE L+      +  D   K  +         HG  R++D Q   PG+ +        GGS++ G  LQ  +CCSTD+CNGLED R EG RRS E+LR LMEG PRK   S    P                   GVGT A                RGG VGGSRFATVLVIVGTFSQVLWL+  LIE
Sbjct:   76 ALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGH-RESDGQNFLPGNSSSRSSRSSDGGSQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADG------GIVAAGGRGSGVGTAAAVEKRMVDGEDDNSA-RGGGVGGSRFATVLVIVGTFSQVLWLVGRLIE 314
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BLAST of mRNA_P-fluviatile_contig13.1858.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.530e-52
Identity = 123/243 (50.62%), Postives = 135/243 (55.56%), Query Frame = 2 
Query:  332 ALQCFSCADCSVGGALSAHIEQCPPEENCCAVVSRPRTSRWGYQSSSVDRGCASSLHLECEPLD------ATPEMASAADHSKGNRQL--HGDSRDADSQQSAPGDENIGGPGGSKSAGGP---LQRSLCCSTDLCNGLEDPRTEGHRRSEEYLRFLMEGNPRKSGNHPPGTSFGXXXXXXXXXXXXDLGVGTVAMTXXXXXXXXXXXXXXRGGVVGGSRFATVLVIVGTFSQVLWLLSSLIE 1027
            ALQCFSC DCSVGGALSA  +QCPP E  CA VSRPRTS   YQSSSVDRGCASSL++ CE L+      A  E+A  A  +     +  HG  R++D Q   PG                   LQ  LCCSTD CNGLED R EG RRSEE+LR LMEG PRK      G+                 GVGT A                RGG  GGSRFATVLVIVGTFSQVLWL+  LIE
Sbjct:   34 ALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEEAGGTATTPAVGDHGH-RESDGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGS---LADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSA-RGGCEGGSRFATVLVIVGTFSQVLWLVGRLIE 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS55_9PHAE2.500e-5450.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTZ0_ECTSI2.530e-5250.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2240184..2242635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003820.1
Exons3
Model size1030
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1858.1prot_P-fluviatile_contig13.1858.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2240359..2242635 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.9499607-UTR-P-fluviatile_contig13:2240183..22403581622815572.9499607-UTR-P-fluviatile_contig13:2240183..2240358Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2240184..2240358 +
1693562285.374283-UTR-P-fluviatile_contig13:2240183..22403581693562285.374283-UTR-P-fluviatile_contig13:2240183..2240358Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2240184..2240358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.9627163-CDS-P-fluviatile_contig13:2240358..22404941622815572.9627163-CDS-P-fluviatile_contig13:2240358..2240494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2240359..2240494 +
1693562285.3842926-CDS-P-fluviatile_contig13:2240358..22404941693562285.3842926-CDS-P-fluviatile_contig13:2240358..2240494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2240359..2240494 +
1622815572.97408-CDS-P-fluviatile_contig13:2241410..22415261622815572.97408-CDS-P-fluviatile_contig13:2241410..2241526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2241411..2241526 +
1693562285.394045-CDS-P-fluviatile_contig13:2241410..22415261693562285.394045-CDS-P-fluviatile_contig13:2241410..2241526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2241411..2241526 +
1622815572.9885535-CDS-P-fluviatile_contig13:2242032..22426351622815572.9885535-CDS-P-fluviatile_contig13:2242032..2242635Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2242033..2242635 +
1693562285.4026852-CDS-P-fluviatile_contig13:2242032..22426351693562285.4026852-CDS-P-fluviatile_contig13:2242032..2242635Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2242033..2242635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1858.1

>prot_P-fluviatile_contig13.1858.1 ID=prot_P-fluviatile_contig13.1858.1|Name=mRNA_P-fluviatile_contig13.1858.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=285bp
MTGGVRRSACDKCPEQRTAPRRRRGRRYVANASRAFVFTVFSIVTEMAVL
ASALQCFSCADCSVGGALSAHIEQCPPEENCCAVVSRPRTSRWGYQSSSV
DRGCASSLHLECEPLDATPEMASAADHSKGNRQLHGDSRDADSQQSAPGD
ENIGGPGGSKSAGGPLQRSLCCSTDLCNGLEDPRTEGHRRSEEYLRFLME
GNPRKSGNHPPGTSFGGGGGGAAASGGGDLGVGTVAMTAAAGGEDDSSAQ
STRGGVVGGSRFATVLVIVGTFSQVLWLLSSLIE*
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mRNA from alignment at P-fluviatile_contig13:2240184..2242635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1858.1 ID=mRNA_P-fluviatile_contig13.1858.1|Name=mRNA_P-fluviatile_contig13.1858.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2452bp|location=Sequence derived from alignment at P-fluviatile_contig13:2240184..2242635+ (Porterinema fluviatile SAG_2381)
CACGCTCTCCTTCCTCTCTGTGTCTCTTTGATTGTCTCACGGTGCGTGAG
TGTGAAGTTACGCGCCGTGCCCGTGCACTACGACTTCATAGCCCGCTCCA
TGACACCGAGGCACAAAAGCTCAGGAAGCAGCTTCTTGACACGCGGATCA
ATTACCGACGAGCTGAAAGGAAGCCATGACCGGCGGCGTCCGTCGCAGTG
CCTGCGACAAATGCCCAGAGCAAAGGACAGCGCCACGGAGAAGGAGGGGG
AGGCGGTATGTCGCGAACGCGTCACGAGCTTTCGTCTTCACCGTCTTCTC
GATCGTTACAGGTGAACCTGCAAGCCACGACCTCGTTGTTCTTACAGACC
TTCCCTTGGCCAGGCGAGCGGGGGCGGAGATTCCTCGGAATTTTCTCTGG
CGTGTCGTTGTCCCGACACCCTGCCGTGGCGCAGCTCTGCCAGCTCCGCC
TAGCCTTGCTTCCCAGTTTCCCTAGGACCGATCGCTCCTGTCACATATCT
CCAGCCCTGAAATTGCCATCATTCATCGATGTATTTATTTTTGAAGGGCG
TTTCCATTTAAGTACTGCAAAGGAGAGTCAGAAAATTTTGCGTTAAAGTT
GGGACCCTCGTCTCTCTTCAATGATGTACAGCCACGCCCCGTTGCACATT
TTCCCTGACGTTGCGACTGCGATATCGAACGCCGTTTCATCCCACTCAAG
ACAAAAAGTCTGATGGTTAACTAATTGTGTTGGATGTGAGCGGGAGCCCG
ATGTTTGGTTTATCTGATACCTTCTCGATCGGTGGAAAGTATTGTAATTT
CCTCGGCACGAGACCATTTCGATGTGTCTGCTTACACCTCTGAACTTTAA
CAGATTACGAACAAAAATGTAATATACGCGATCATGTGCTGCAAAATTTA
TTATTGCCCAACACAGCAGGACGGGTAGCCACGGTAGGTGCGTGCGTCCG
ACCTGATCGATCTCGTCTCTGATGATGCTTACGCGAAGCTAGCCCTGATT
CGTTTTCTTCACCATACTAATCCTCTGCAGAAAAGCTGCGACGGTTATCA
ACTTCGTCACAGCAGCTGACGCGCTACTGCGCATCTCTCACTCTCTTTGC
CATCCCTCGGCTTTCCTGTGTCTCGCGCGGCTTCGTCACACTGCCTCGGC
CGTGTGGCCCAAATTCACATCCACGACGGACACCTCACGTTACAATTACG
TCACCCCCTTGGACAACGAACACAAAGAGATGGCGGTGCTGGCGTCGGCG
CTTCAATGCTTCTCGTGTGCCGATTGCTCTGTTGGAGGCGCACTATCGGC
GCACATAGAACAGTGTCCGCCGGAGGAGAACTGCTGCGCGGTGGTGAGTA
AACAGGGGCAGCGAACAATCAGCGTTTAGATCCGGCTCTTTGTGTACACT
CCGGCGTACAATATTTTTTCCCACGCGAGGCCAGAAACTGTGTTTGCTTC
CTTTCTTGCGGTTTTCCTCTATTGTATCAGTATGCTCAAGCTGGTGAACT
GACTCCAATAGAGCTTTCGGTCCAGGTGAAACCAGCGGAATGGTTGCCAC
CGGTGGACCCAGTATTTGCTGATCGGAAATGGGAGCGAATTCATAAGCAG
GTGTTCTCCTCCACCCGATTTGACGGCGCGCACCTACTTGCATATTCAGT
ACTTCTCTGGTTTCCTTCCTGTACTGGATATACACAGAACCTTGTCCGCT
GTCTAGATTGGTCGTCGAAAAAGTTGTGCTTTTTGGATGCTTAATTTTTC
TTTTTGAGTAGCTGAGCAACATGTGGAGAATCCCCGGTACTGTGTTTCTG
TCTCCATATCTGACAATCTCATGATGACGCGGAATCGGCAACCGAGCAGG
TGTCCCGGCCACGGACAAGTCGTTGGGGATACCAGTCCTCTTCTGTTGAT
CGCGGCTGCGCCTCCTCGCTGCACTTGGAGTGCGAGCCGCTGGATGCCAC
ACCGGAAATGGCTTCAGCAGCAGATCATTCAAAAGGAAATCGCCAACTTC
ATGGTGATAGTCGAGACGCAGACAGCCAGCAATCTGCTCCGGGCGATGAA
AATATCGGCGGTCCCGGTGGGAGCAAGAGTGCGGGGGGACCGTTGCAGCG
ATCACTCTGCTGCTCGACAGACCTGTGTAATGGCCTAGAGGACCCGCGGA
CGGAGGGACACCGCCGATCCGAGGAATACCTGCGGTTCCTGATGGAGGGT
AATCCTCGGAAGAGCGGGAATCATCCGCCGGGCACCTCGTTTGGTGGCGG
TGGTGGTGGAGCCGCGGCCAGCGGTGGTGGTGATTTGGGGGTGGGGACAG
TAGCGATGACGGCGGCTGCGGGTGGCGAGGACGATAGCTCTGCGCAGTCC
ACGCGAGGGGGGGTGGTCGGGGGATCGCGGTTCGCGACGGTGCTTGTGAT
TGTGGGTACTTTTTCGCAGGTGCTGTGGCTGCTCAGCAGCCTGATAGAGT
GA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2240184..2242635+

>mRNA_P-fluviatile_contig13.1858.1 ID=mRNA_P-fluviatile_contig13.1858.1|Name=mRNA_P-fluviatile_contig13.1858.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1710bp|location=Sequence derived from alignment at P-fluviatile_contig13:2240184..2242635+ (Porterinema fluviatile SAG_2381)
ATGACCGGCGGCGTCCGTCGCAGTGCCTGCGACAAATGCCCAGAGCAAAG
GACAGCGCCACGGAGAAGGAGGGGGAGGCGGTATGTCGCGAACGCGTCAC
GAGCTTTCGTCTTCACCGTCTTCTCGATCGTTACAGATGACCGGCGGCGT
CCGTCGCAGTGCCTGCGACAAATGCCCAGAGCAAAGGACAGCGCCACGGA
GAAGGAGGGGGAGGCGGTATGTCGCGAACGCGTCACGAGCTTTCGTCTTC
ACCGTCTTCTCGATCGTTACAGAGATGGCGGTGCTGGCGTCGGCGCTTCA
ATGCTTCTCGTGTGCCGATTGCTCTGTTGGAGGCGCACTATCGGCGCACA
TAGAACAGTGTCCGCCGGAGGAGAACTGCTGCGCGGTGAGATGGCGGTGC
TGGCGTCGGCGCTTCAATGCTTCTCGTGTGCCGATTGCTCTGTTGGAGGC
GCACTATCGGCGCACATAGAACAGTGTCCGCCGGAGGAGAACTGCTGCGC
GGTGGTGTCCCGGCCACGGACAAGTCGTTGGGGATACCAGTCCTCTTCTG
TTGATCGCGGCTGCGCCTCCTCGCTGCACTTGGAGTGCGAGCCGCTGGAT
GCCACACCGGAAATGGCTTCAGCAGCAGATCATTCAAAAGGAAATCGCCA
ACTTCATGGTGATAGTCGAGACGCAGACAGCCAGCAATCTGCTCCGGGCG
ATGAAAATATCGGCGGTCCCGGTGGGAGCAAGAGTGCGGGGGGACCGTTG
CAGCGATCACTCTGCTGCTCGACAGACCTGTGTAATGGCCTAGAGGACCC
GCGGACGGAGGGACACCGCCGATCCGAGGAATACCTGCGGTTCCTGATGG
AGGGTAATCCTCGGAAGAGCGGGAATCATCCGCCGGGCACCTCGTTTGGT
GGCGGTGGTGGTGGAGCCGCGGCCAGCGGTGGTGGTGATTTGGGGGTGGG
GACAGTAGCGATGACGGCGGCTGCGGGTGGCGAGGACGATAGCTCTGCGC
AGTCCACGCGAGGGGGGGTGGTCGGGGGATCGCGGTTCGCGACGGTGCTT
GTGATTGTGGGTACTTTTTCGCAGGTGCTGTGGCTGCTCAGCAGCCTGAT
AGAGTGAGTGTCCCGGCCACGGACAAGTCGTTGGGGATACCAGTCCTCTT
CTGTTGATCGCGGCTGCGCCTCCTCGCTGCACTTGGAGTGCGAGCCGCTG
GATGCCACACCGGAAATGGCTTCAGCAGCAGATCATTCAAAAGGAAATCG
CCAACTTCATGGTGATAGTCGAGACGCAGACAGCCAGCAATCTGCTCCGG
GCGATGAAAATATCGGCGGTCCCGGTGGGAGCAAGAGTGCGGGGGGACCG
TTGCAGCGATCACTCTGCTGCTCGACAGACCTGTGTAATGGCCTAGAGGA
CCCGCGGACGGAGGGACACCGCCGATCCGAGGAATACCTGCGGTTCCTGA
TGGAGGGTAATCCTCGGAAGAGCGGGAATCATCCGCCGGGCACCTCGTTT
GGTGGCGGTGGTGGTGGAGCCGCGGCCAGCGGTGGTGGTGATTTGGGGGT
GGGGACAGTAGCGATGACGGCGGCTGCGGGTGGCGAGGACGATAGCTCTG
CGCAGTCCACGCGAGGGGGGGTGGTCGGGGGATCGCGGTTCGCGACGGTG
CTTGTGATTGTGGGTACTTTTTCGCAGGTGCTGTGGCTGCTCAGCAGCCT
GATAGAGTGA
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