mRNA_P-fluviatile_contig13.1752.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig13.1752.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI) HSP 1 Score: 697 bits (1799), Expect = 1.150e-226 Identity = 437/824 (53.03%), Postives = 529/824 (64.20%), Query Frame = 1
Query: 1471 LQKQARVWLARRAVDLKRVEVGLTSRVSELAERLASSDDSRSVSAVFGQIDKDYRKYEKIIAEMKAREEKMAITFVEKVLESRDADIEGAWARFVGAATEYGKSLKQQSEARRTHPHLVSHDYGIRSTELHDEKLLLLMERYAVPARARTLPSAFLRVALPMHLRLRGGSL----RPPAQN-----GNQRNKRKRICDITPSPTGGQSPAELETGGAFASRVETTVT--KSAXXXXXXXXPTYRTGVAPAGYPNKSSSNGGRRS--KDCESRSEKMQTTTGNDNSFDFGC----GVGGGRDDSRGGCNRAVADTSD----GGDAWSSVASGSGYPARYFPDSKRVGDGGGPATGWENAWDTERASRGLTGDAGSRFPGSTVRRDLPSGLRESVERLCAAAFLRGHVPRGLMPEGTTPGEAYQRYLELPPSLAKIRHEQLCTEASKPVASALRGRGYITVEQLLPLSKLECLVGQAGAGSGETLAAVSLARELRPKQDASGAGXXXXXXXXXXXGGHGVFSPLPSFSRRGLFAGSRRASSSTEGSGRS----GLGGAGFGEGRRKVESRGASRSMINISCGYPGGDRSCVTKKKKKAL-RISLSGLEFEGDARGAEK-RSQWEPSKYTSRPEEWVRPPPSVIKQRWDDSTKSFVPIKNYSFDGLYRRHHPLDLPDGNDEEGGSHHRQMGYDRNPADVDHEGNVRLAEGERHSTVGRRDCSSRVDGTPPASLTRTKILPGPAGGGDLAARRMKNVLREEYGTFFDGMTQSARDLHQHMIKDSTSWGSVDDPIGTLLRRAAFFIVEHPSPATRAELAAARAKDLAAK 3861
+ KQARVWLARRAV L++V+VGLTSRVS+L + LASSDDSRS+S VFGQID+DYRKY++IIAEM+ARE++MA+TFVEKVLE R ADI GAW RFVGAATEY +++S+ARR HP+ S D ++E+HDEKL+ LMERY +PA A+ LPSA+LR ALPMHL+LR L + QN G QR KR+R+ + PS + + A + GG F V+ K + T T P++ SS G+RS CE R+ G D + GC G G D+ G R T GD +V S R+ G GG +GWE+ WD ER RGLTGDAGSRFPGS VR+D+PSGL E+VERLCAAAFLRGHVP GLMP+GTTP EAY+RYLELPPSLAKIRHEQLCTEAS+PVASALR RGY +EQLLPLSKLE L QAG+G+ ETLAAVS+A E++PK+ G G G +FSPL FSRR L A SR A ST+ S RS GL E RK SRG+ R + KKK L RIS+ GLE A G E+ +W+PS+YTSRPEEW+RPPPSVIKQRWDDS K+FVP+ NY+FDGLYRRHHPLD D HR + +R+ + +EG+R +G+ + SR G +S T L G A GG A+R++++++EEYGTFFDGMTQSA +L+QHMI DS SWGSVDD IG LLRRAAFFIVEHPSPATRAELA AR +DL AK
Sbjct: 37 IDKQARVWLARRAVHLQKVKVGLTSRVSKLTDMLASSDDSRSISTVFGQIDRDYRKYDRIIAEMQAREDEMAVTFVEKVLERRAADIGGAWTRFVGAATEYSAGRRKRSDARRAHPYPASGDKRAAASEIHDEKLMRLMERYEIPAHAKALPSAYLRAALPMHLKLRSERLVSVEKGHTQNVVSIDGTQRQKRRRVNTLLPS-SNEEVGARQDGGGVFMPAVQCNSLDEKMSSISPATAAATITTAAGAINSPSRFSSFEGKRSGAHSCERRT----AAGGYDGAGGIGCRGSDGGGASGDEDFGFVERHQTLTRQTSRHAGDGAENVGLDSAGSQRW------EGGGGVSTSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKPKRGVGGCGNGS---------GDDLFSPLSPFSRRCL-ARSRAAPISTQRSPRSRRREGLDDCVSDESVRKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGMEQGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAKAFVPVNNYTFDGLYRRHHPLDHCCDED------HRHVDNERDMVTRGGGDDNWCSEGKRDGAMGQEEHPSRPGGLYRSSPTAADPLSG-AAGGSCFAKRVESIMQEEYGTFFDGMTQSATELYQHMINDSGSWGSVDDSIGILLRRAAFFIVEHPSPATRAELAVARERDLVAK 832
BLAST of mRNA_P-fluviatile_contig13.1752.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.100e-14 Identity = 50/111 (45.05%), Postives = 69/111 (62.16%), Query Frame = 1
Query: 2554 RDLPSGLRESVERLCAAAFLRGHVPRGLMPEGTTPGEAYQRYLELPPSLAKIRHEQLCTEASKPVASALRGRGYITVEQLLPLSKLECLVGQAGAGSGETLAAVSLARELR 2886
RD+P GL + RL AA LR VP MP GT+ A++ YL LPPSLAKI+HEQ +A++P A+AL G+ + L+P+SK+ ++ + G + LAA LA ELR
Sbjct: 1332 RDIPGGLHDCTGRLLRAALLRSFVP-STMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEELR 1441
BLAST of mRNA_P-fluviatile_contig13.1752.1 vs. uniprot
Match: A0A7S2E736_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E736_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.580e-11 Identity = 160/683 (23.43%), Postives = 253/683 (37.04%), Query Frame = 1
Query: 943 LVHDGVEQRVRVEVVEPLLRTLLAETTRQITEQRGELAAIVQYVYSLAASRLQPFVRGTLARRKLADASWELFHNAFLCAAVEIQRMFRGYTARRRARAALVLLASTRRGALALARVRGVLLRQRVARK---------WDILLDRQAVEIQRVFRG-HRSRGRVRSA--LKDRVRAQSAELQGWASLVLQKQARV----WLARRAVDLKRVEVGLTSRVSELAERLASSDDSRSVSAVFGQ----IDKDYRKYEKIIAEMKAREEKMAITFVEKVLESRDADIEGAWARFVGAATEYGKSLKQQSEARRTHPHLVSHDYGIRSTELHDEKLLLLMERYAVPARARTLPSAFLRVALPMHLRLRGGSLRPPAQNGNQRNKRKRICDITPSPTGGQSPAELETGGAFASRVETTVTKSAXXXXXXXXPTYRTGVAPAGYPNKSSSNGGRRSKDCESRSEK----MQTTTGNDNSFDFGCGVGGGRDDSRGGC---NRAVADTSDGGDAWSSVASGSGYPARYFPDSKRVGDGGGPATGWENAWDTERASRGLTGDAGSRFP--GSTVRRDLPSGLRESVERLCAAAFLRGHVP-----------RGLMPE-------------GTTPGE-------AYQRYLELPPSLAKIRHEQLCTEASKPVASALRGRGYITVEQLLPLSKL 2811
L GV QR+ V + P+L T L ++Q+ + R ELA ++Q Y +A +Q +RG L R L L + A AAVEIQR+ R +++ +R AL + ++ + RK W +D +R+ ++ A + D +R Q E++ L+ A + W+ R + + R++ RL D + Q ID+DYR+YE + ++ RE+ MA TFV KV R+ + E AW T Y L + E+ + EK + A+P+ + P A L AL S++ + N N E+ GG R +S+ RT P +P ++S + S+ +T+T N+ + R C N + +SD D G + + ++ + WE E G + A + FP G +RRDLP GL +++ER AA LR + R P T G+ AYQ YL+LPP L K+ E +C++ +P+ S L GY + QLLP K+
Sbjct: 111 LAQSGVWQRIDVHSLVPILITNLHRCSKQLRQVRTELAILIQSTYEMAVPHVQKVIRGHLTRTTLNSMRRGLTNLARFAAAVEIQRISRSLLSKK----------EMQRRHHALCHAMAIRIQTHIRRKLACIEYQRRWKKYIDEXXXXXXXXXXSLYRNWKMIQIAKRIADELRRQREEMERAKIAQLRSNAAILIQSWIRRHLAKWAVHDKRIEIRLNY---RLLKFLDQFMIDGDLWQFLKRIDEDYRRYEDTMLDILEREDVMAATFVSKVTRLRENEHESAW-------TAYKDLLLRLRESHKM------------------EKTNHSQDSPAIPSSSLAPPRASLIRAL------ESLSIKEHTKLTNMGN------------------GEIS-GGELGDRFSMYREESSQWRQYQQQKKRRT---PRCHPIANNSTRNNTISNYHSKKSNGFFPKETSTRAKNALHL---------EGRLSCCRQNETLPLSSDNCDN-----DGQSITSNKYSSTRTMAK-----VDWEPDRCREMDRMGFSFLASAHFPSGGDILRRDLPGGLDDTLERFLRAASLRSYSTSSQNINALYEKRNTDPPKTQIENQCIDDIGNTNEGDGKQNDKTAYQIYLDLPPGLKKVHFEAICSDRIRPLVSKLHHMGYTHIRQLLPREKM 708 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig13.1752.1 >prot_P-fluviatile_contig13.1752.1 ID=prot_P-fluviatile_contig13.1752.1|Name=mRNA_P-fluviatile_contig13.1752.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1376bp MKPDCLAMVQLGKGMKLQRREILDRLRIEEARREYIEWELGVAVEKTESRback to top mRNA from alignment at P-fluviatile_contig13:1308289..1320217+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig13.1752.1 ID=mRNA_P-fluviatile_contig13.1752.1|Name=mRNA_P-fluviatile_contig13.1752.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=11929bp|location=Sequence derived from alignment at P-fluviatile_contig13:1308289..1320217+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig13:1308289..1320217+ >mRNA_P-fluviatile_contig13.1752.1 ID=mRNA_P-fluviatile_contig13.1752.1|Name=mRNA_P-fluviatile_contig13.1752.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=8256bp|location=Sequence derived from alignment at P-fluviatile_contig13:1308289..1320217+ (Porterinema fluviatile SAG_2381)back to top |