mRNA_P-fluviatile_contig13.1693.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1693.1
Unique NamemRNA_P-fluviatile_contig13.1693.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1693.1 vs. uniprot
Match: D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.440e-30
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:   31 LVVLTAMVLQM--AAAADFELSNAPGTIRREDRDPFKEGYFHMVIACFALMFFFIGCMFTVRITMGKRRNNDSRSFFLVA 264
            L+VL A VL M  AAA DFE+S   G+IR +DRDPFKEGYF+M+I+CFALMFFFIGCMF+VRI +GK+R NDS SFFLVA
Sbjct:    8 LLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKI6_ECTSI2.440e-3071.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:780969..781235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001930.1
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815547.6959717-CDS-P-fluviatile_contig13:780968..7812351622815547.6959717-CDS-P-fluviatile_contig13:780968..781235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 780969..781235 +
1693562218.568935-CDS-P-fluviatile_contig13:780968..7812351693562218.568935-CDS-P-fluviatile_contig13:780968..781235Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 780969..781235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1693.1prot_P-fluviatile_contig13.1693.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 780969..781235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1693.1

>prot_P-fluviatile_contig13.1693.1 ID=prot_P-fluviatile_contig13.1693.1|Name=mRNA_P-fluviatile_contig13.1693.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=89bp
MMASMSHPLLLVVLTAMVLQMAAAADFELSNAPGTIRREDRDPFKEGYFH
MVIACFALMFFFIGCMFTVRITMGKRRNNDSRSFFLVA*
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mRNA from alignment at P-fluviatile_contig13:780969..781235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1693.1 ID=mRNA_P-fluviatile_contig13.1693.1|Name=mRNA_P-fluviatile_contig13.1693.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=267bp|location=Sequence derived from alignment at P-fluviatile_contig13:780969..781235+ (Porterinema fluviatile SAG_2381)
ATGATGGCTTCGATGAGCCACCCACTTCTGCTGGTCGTCTTGACTGCGAT
GGTCCTCCAGATGGCGGCGGCGGCGGATTTCGAACTCTCCAACGCACCGG
GCACCATCCGGCGCGAGGACCGCGACCCTTTCAAGGAGGGCTACTTCCAC
ATGGTTATCGCCTGCTTCGCCCTCATGTTCTTCTTCATCGGTTGCATGTT
CACCGTCCGCATCACCATGGGCAAGCGCCGCAACAACGACTCGAGGTCGT
TCTTCCTGGTGGCTTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:780969..781235+

>mRNA_P-fluviatile_contig13.1693.1 ID=mRNA_P-fluviatile_contig13.1693.1|Name=mRNA_P-fluviatile_contig13.1693.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=534bp|location=Sequence derived from alignment at P-fluviatile_contig13:780969..781235+ (Porterinema fluviatile SAG_2381)
ATGATGGCTTCGATGAGCCACCCACTTCTGCTGGTCGTCTTGACTGCGAT
GGTCCTCCAGATGGCGGCGGCGGCGGATTTCGAACTCTCCAACGCACCGG
GCACCATCCGGCGCGAGGACCGCGACCCTTTCAAGGAGGGCTACTTCCAC
ATGGTTATCGCCTGCTTCGCCCTCATGTTCTTCTTCATCGGTTGCATGTT
CACCGTCCGCATCACCATGGGCAAGCGCCGCAACAACGACTCGAGGTCGT
TCTTCCTGGTGGCTTAAATGATGGCTTCGATGAGCCACCCACTTCTGCTG
GTCGTCTTGACTGCGATGGTCCTCCAGATGGCGGCGGCGGCGGATTTCGA
ACTCTCCAACGCACCGGGCACCATCCGGCGCGAGGACCGCGACCCTTTCA
AGGAGGGCTACTTCCACATGGTTATCGCCTGCTTCGCCCTCATGTTCTTC
TTCATCGGTTGCATGTTCACCGTCCGCATCACCATGGGCAAGCGCCGCAA
CAACGACTCGAGGTCGTTCTTCCTGGTGGCTTAA
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