mRNA_P-fluviatile_contig12.1601.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1601.1
Unique NamemRNA_P-fluviatile_contig12.1601.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 3.540e-99
Identity = 164/255 (64.31%), Postives = 190/255 (74.51%), Query Frame = 1
Query:    4 PPNPPATIQLAAGSVVIIFHVLHGQRQSPDKLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFKDAEELHIGDPVRLYTRGGNDCVGEGRIIAYGQETWGSTGILLAPRHATRGHSRRWVVRISKVHVSLASTLYPDETAVPGTQPTAHVGDRVDQTLLWDAARMRKAAA 768
            P NPPATIQLAAG  V+IFHVLHGQR  P +LP  LV LLED  L KTGVGIKGDCTRL  F+GV+V + VDL SLA++RKV++G RRGLADLC+HLLG+ L K   +RLS+WN   LS +QK YAA DAY   LL GRI ELSD IF+DAEELH+GD VRLYTR GNDCVGEG I+ +  ETWG+TG  L PR ATR  +RRW VR+ +VHV  A TLYPD T   GT  TA +  RVD  +LWDA+R+RK  A
Sbjct:  268 PANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCIVEHTDETWGTTGFYLVPRRATRRFARRWAVRLDRVHVPRAKTLYPDATDPRGTPATAQLASRVDSVILWDASRLRKTTA 522          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.650e-51
Identity = 100/189 (52.91%), Postives = 123/189 (65.08%), Query Frame = 1
Query:  229 LALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFKDAEELHIGDPVRLYTRGGNDCVGEGRIIAYGQETWGSTGILLAPRHATRGHSRRWVVRISKVHVSLASTLYPDETAVPGTQPTAHVGDRVDQTLLWDAARMRKAAAGAGDGGRGA 795
            +A++RKV++  RRGLADLC++LL K L K   +RLS+WN   LS +QK               RI ELSD IF+DAEE+H+GD VRLYTR GNDCVGEG I+ +  ETWG+TGI L PR ATRG +RRW V + +VHV  A  LYPD T   G   TA +  RVD  +LWDA+R+RK  A    G  GA
Sbjct:    1 MAVERKVELWFRRGLADLCVNLLEKQLPKDPIVRLSKWNKLDLSDDQKR--------------RIGELSDSIFRDAEEMHVGDSVRLYTRAGNDCVGEGCIVEHTDETWGTTGIYLVPRRATRGFARRWAVHLDRVHVPRAKALYPDATDRRGDPATAQLASRVDSVILWDASRLRKMTATPSAGAAGA 175          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.650e-27
Identity = 101/269 (37.55%), Postives = 136/269 (50.56%), Query Frame = 1
Query:   22 TIQLAA-GSVVIIFHVLHGQRQS-PDKLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFKDA-EELHI-GDPVRLYTRGGNDCVGEGRIIAYGQ-----ETWGSTGILLAPRHATR-GHSRRWVVRISKVHVSLASTLYPDETAVPGT-----QPTA-------HVGDRVDQTLLWDAARMRKA 762
            T+QLA       +FH+  G R++ P    +SL  LL D ++ K GV +KGD +RLQR +GV+   +VDL S A    VD+ P R LA +    LGKSL K   +R SRW+   L++ Q  YA  DAY A +L   I +  DPIF  A  ++ I G  VRLYT     CVG G++          E WG T + LA R  TR G  +R VV++  V V   ++L P + A P       QP         H G   +  +LWD   +R A
Sbjct:  110 TLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDL-PCRSLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQVNYACLDAYAAVVLHAEIGKSKDPIFCMAPSDIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWG-TDLKLAQREGTRSGGLKRVVVKV--VDVLKPASLTPHQDAPPXXXXXXGQPRVAVSMNDVHSGKGFEGFVLWDLVHVRLA 374          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.610e-19
Identity = 85/258 (32.95%), Postives = 123/258 (47.67%), Query Frame = 1
Query:    7 PNPPATIQLAA-GSVVIIFHVLHGQRQSPDK-LPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFKDAE-ELHIGDPVRLYTRGGNDCVGEGRIIAYGQETWGSTGILLAPRHATRGHSRRWVVRISKVHVSLASTLY---PDETAVPG--TQPTAHVGDRVDQTLLWDAARMR 756
            PNP +T+QL+        F +  G +++     P++L  LLE+ S+AK GV I  D T L+R +G++V N VDL + A Q  V+  P R LA +   LLG+ L K   +R SRW+ + LS  Q+                +++  DPIF     ELH G  VRLY+     CVG G +     +T         P    +G   + VV +S V    A T +   P   +  G  T   A+ GDR+   +LWD A +R
Sbjct:  130 PNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVET-PSRSLAGMASSLLGRQLPKDPVIRSSRWS-SPLSDNQE----------------VAKFQDPIFSPPPVELHPGTKVRLYSNNHASCVGVGEV--QDDDTAAEALAGWFPGARRKGRLTQVVVGLSGVFKPAAYTAHKGTPSAASGVGRVTMDEAYKGDRL---VLWDVAHVR 364          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-14
Identity = 80/257 (31.13%), Postives = 113/257 (43.97%), Query Frame = 1
Query:    7 PNPPATIQLAA-GSVVIIFHVLHGQRQSPDK-LPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFKDAEELHIGDPVRLYTRGGNDCVGEGRIIAYGQETWGSTGILLAPRHATRGHSRRWVVRISKVHVSLASTLY---PDETAVPG--TQPTAHVGDRVDQTLLWDAARMR 756
            PNP +T+QL+        F +  G +++     P++L  LLE+ S+AK GV I  D T L+R +G++V N VDL + A Q  V+  P R LA +   LLG+ L K   +RLSRW+                          S LSD            D VRLY+     CVG G +     +T         P    +G   + VV +S V    A T +   P   +  G  T   A+ GDR+   +LWD A +R
Sbjct:  438 PNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVET-PSRSLAGMASSLLGRQLPKDPVIRLSRWS--------------------------SPLSD------------DQVRLYSNNHASCVGVGEV--QDDDTAAEALAGWFPGARRKGRLTQVVVGLSGVFKPAAYTAHKGAPRAASGVGRVTMDEAYKGDRL---VLWDVAHVR 650          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A8C5V198_MICMU (DNA helicase n=8 Tax=Lemuriformes TaxID=376915 RepID=A0A8C5V198_MICMU)

HSP 1 Score: 80.1 bits (196), Expect = 1.230e-12
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   19 ATIQLAAG-SVVIIFHVLHGQRQSPDKLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSD 438
            A IQL    S   +FHV      +    PQ L  LLE+ ++ K GVGI+GD  +L R F + +++ V+L  +A  +K+       L  L  HLLGK L K + +R S W+   LS++QK YAA DAY   +++ ++  L D
Sbjct:   99 ALIQLCVSESKCYLFHV-----SAASVFPQGLKNLLENEAIKKAGVGIEGDQWKLLRDFDIKLKSFVELTDVA-NKKLKCRETWSLNGLVKHLLGKQLLKDKSIRCSDWSNFPLSKDQKLYAATDAYAGLIIYRKLEILGD 233          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A7S0WQT4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WQT4_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 2.130e-12
Identity = 54/119 (45.38%), Postives = 65/119 (54.62%), Query Frame = 1
Query:   70 HGQRQSPDK--LPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDV------GPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVA 402
            HGQ+       LP SLV LL D SL K GVGI+GDC RL R FGV V+  VDL  +A     D       G   GLA L   LLG+ ++K Q  + S W    LS  Q  YAA+DA+V+
Sbjct:  271 HGQQPHAHARGLPPSLVRLLSDPSLIKAGVGIRGDCARLARDFGVTVRGAVDLRVVARAVAPDALVARTQGAGAGLAGLASALLGRVVDKAQ--QCSHWGREVLSGAQVAYAAQDAWVS 387          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A7K8I244_9CORV (WRN helicase (Fragment) n=1 Tax=Aleadryas rufinucha TaxID=461220 RepID=A0A7K8I244_9CORV)

HSP 1 Score: 77.8 bits (190), Expect = 4.370e-12
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   19 ATIQLA-AGSVVIIFHVLHGQRQSPDKLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELS 435
            A IQ+  A     +FHV      S    P+ L  LLED ++ K GVGI+GD  +L   F + +++ V+L  +A   K++      L  L  HL G+ L K Q +R S W    L++EQK YAA DAY  Y+++ ++  +S
Sbjct:  100 AVIQMCVAEDKCYLFHV-----SSMAGFPKGLKRLLEDETIKKVGVGIEGDQWKLMSDFEIKLKSFVELADVA-NEKLNCKETWSLNGLVKHLFGRQLLKDQSVRCSNWQEFPLNKEQKLYAATDAYAGYIVYEKLKNMS 233          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: A0A8C8HBK4_ONCTS (DNA helicase n=2 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8HBK4_ONCTS)

HSP 1 Score: 78.2 bits (191), Expect = 5.030e-12
Identity = 52/117 (44.44%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   94 KLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVA-------YLLFGRI 423
            + P  L   LED ++ K GVGIKGD  +L   F V ++N V+L  LA  R +  G R  L  L  HL  K L KQQ +R S W+   LS+EQK YAA DAYV+       Y + GRI
Sbjct:  116 RFPTGLKIFLEDETIRKVGVGIKGDMWKLLSDFDVKLKNFVELGDLANGR-LRCGERWSLDGLVKHLFKKRLFKQQDVRCSNWDDFELSQEQKRYAATDAYVSGGKPTVSYCVIGRI 231          
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Match: D8PNN0_SCHCM (3'-5' exonuclease domain-containing protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8PNN0_SCHCM)

HSP 1 Score: 77.8 bits (190), Expect = 5.380e-12
Identity = 60/148 (40.54%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   10 NPPATIQLAAGSVVIIFHVLHGQRQSPDKLPQSLVGLLEDGSLAKTGVGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVD----VGPRR---GLADLCLHLLGKSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISEL 432
            N  A +Q+A G  +++  V   Q       P+ L  LLED S+AKTGVGI GD  +L R  G+ + NVVDL  +   R VD     GP     GLA L      + L K +  R S W    LS EQK YAA DA+ A++L+GR+  L
Sbjct:   76 NRVALVQVADGDHIVLVQVSQMQL-----FPEQLRLLLEDPSVAKTGVGISGDAQKLYRDHGISMSNVVDLGLMT--RSVDNANWKGPYSSPIGLARLIDFYEKRELRKGRISR-SNWEKVPLSDEQKQYAANDAHCAWVLYGRLRTL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE3.540e-9964.313'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.650e-5152.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE1.650e-2737.553'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FIV1_ECTSI1.610e-1932.95Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
D7FIV2_ECTSI1.030e-1431.133'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8C5V198_MICMU1.230e-1236.88DNA helicase n=8 Tax=Lemuriformes TaxID=376915 Rep... [more]
A0A7S0WQT4_9CHLO2.130e-1245.38Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7K8I244_9CORV4.370e-1235.71WRN helicase (Fragment) n=1 Tax=Aleadryas rufinuch... [more]
A0A8C8HBK4_ONCTS5.030e-1244.44DNA helicase n=2 Tax=Oncorhynchus tshawytscha TaxI... [more]
D8PNN0_SCHCM5.380e-1240.543'-5' exonuclease domain-containing protein (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:3444380..3445640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue7.3e-19
Seed eggNOG ortholog2880.D7FIV1
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size1060
Cds size1056
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815533.227392-CDS-P-fluviatile_contig12:3444379..34447531622815533.227392-CDS-P-fluviatile_contig12:3444379..3444753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3444380..3444753 +
1693562163.8078775-CDS-P-fluviatile_contig12:3444379..34447531693562163.8078775-CDS-P-fluviatile_contig12:3444379..3444753Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3444380..3444753 +
1622815533.237267-CDS-P-fluviatile_contig12:3444956..34456381622815533.237267-CDS-P-fluviatile_contig12:3444956..3445638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3444957..3445638 +
1693562163.8230262-CDS-P-fluviatile_contig12:3444956..34456381693562163.8230262-CDS-P-fluviatile_contig12:3444956..3445638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 3444957..3445638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1601.1prot_P-fluviatile_contig12.1601.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 3444380..3445638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1601.1

>prot_P-fluviatile_contig12.1601.1 ID=prot_P-fluviatile_contig12.1601.1|Name=mRNA_P-fluviatile_contig12.1601.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=352bp
DPPNPPATIQLAAGSVVIIFHVLHGQRQSPDKLPQSLVGLLEDGSLAKTG
VGIKGDCTRLQRFFGVDVQNVVDLPSLALQRKVDVGPRRGLADLCLHLLG
KSLEKQQHLRLSRWNITALSREQKGYAARDAYVAYLLFGRISELSDPIFK
DAEELHIGDPVRLYTRGGNDCVGEGRIIAYGQETWGSTGILLAPRHATRG
HSRRWVVRISKVHVSLASTLYPDETAVPGTQPTAHVGDRVDQTLLWDAAR
MRKAAAGAGDGGRGATPVAAALIQDARPRSEQGAVSTAAEVSSATAAGFR
TPSEPFFAGQFSGIEALSAEVVSAMNAWVNHLDVRGVAPRSDTSGGGGEA
KG
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mRNA from alignment at P-fluviatile_contig12:3444380..3445640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1601.1 ID=mRNA_P-fluviatile_contig12.1601.1|Name=mRNA_P-fluviatile_contig12.1601.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1261bp|location=Sequence derived from alignment at P-fluviatile_contig12:3444380..3445640+ (Porterinema fluviatile SAG_2381)
GACCCTCCCAATCCACCCGCCACGATTCAGTTGGCTGCAGGCAGTGTCGT GATCATTTTTCATGTCCTGCATGGGCAACGCCAGTCTCCGGATAAGCTAC CGCAGTCTCTAGTTGGTCTGTTGGAAGATGGTAGTCTGGCCAAGACGGGT GTTGGGATCAAGGGTGACTGCACACGGCTCCAGCGGTTCTTTGGCGTAGA TGTACAAAACGTTGTAGATCTACCCAGTCTAGCGTTGCAGCGCAAAGTGG ATGTGGGCCCGAGGCGGGGCCTGGCCGACTTGTGCCTTCACCTGCTGGGG AAAAGTCTGGAGAAACAGCAGCATCTGAGACTTTCGCGCTGGAACATCAC GGCGCTATCGAGGGAGCAGAAAGGGCGAGTTTTTGCTTTTGACAACCACG TTTTCTAGGCAAAGCAGCACTCGGTTCGATCTCCCGCCCTCTTTCGCCGT CCATCCCTTAATTTCGCACGCCCGCCGCCCTCTCTTTCGCACGCCGACCC TTCCCCCTCGTGAGTATTTTTCCGCGACGATTCTTGAGACACTTTTCCGC CCCACCCCATCATAATCCTTTCCACAGGTATGCTGCCCGCGATGCGTATG TGGCGTACCTGTTGTTTGGGCGCATCTCGGAGCTTTCGGACCCGATTTTC AAGGATGCAGAGGAGCTGCATATCGGAGACCCCGTTCGTCTTTACACGCG GGGGGGAAATGATTGCGTGGGAGAAGGCCGTATCATCGCGTACGGCCAAG AGACATGGGGGTCCACGGGAATTCTCCTCGCACCTCGACATGCTACGCGC GGCCATAGTCGACGGTGGGTGGTGCGTATATCGAAAGTGCACGTGTCGCT CGCTAGCACGTTGTATCCAGACGAGACCGCTGTACCTGGAACCCAGCCGA CCGCGCATGTGGGAGACCGGGTGGATCAGACTCTGCTGTGGGACGCAGCA CGCATGCGAAAGGCAGCTGCCGGCGCTGGAGATGGAGGGAGGGGCGCAAC TCCCGTGGCTGCAGCTTTGATTCAAGACGCTAGGCCACGTTCTGAGCAGG GAGCCGTGTCCACGGCAGCCGAGGTGTCGAGTGCGACCGCTGCCGGCTTC AGGACTCCTTCGGAGCCCTTCTTTGCTGGGCAGTTTTCCGGGATCGAAGC GCTGAGCGCTGAGGTTGTGTCTGCTATGAATGCGTGGGTGAACCACTTGG ACGTTCGGGGTGTGGCGCCGCGCAGCGACACATCGGGGGGTGGAGGCGAG GCTAAAGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:3444380..3445640+

>mRNA_P-fluviatile_contig12.1601.1 ID=mRNA_P-fluviatile_contig12.1601.1|Name=mRNA_P-fluviatile_contig12.1601.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2112bp|location=Sequence derived from alignment at P-fluviatile_contig12:3444380..3445640+ (Porterinema fluviatile SAG_2381)
GACCCTCCCAATCCACCCGCCACGATTCAGTTGGCTGCAGGCAGTGTCGT
GATCATTTTTCATGTCCTGCATGGGCAACGCCAGTCTCCGGATAAGCTAC
CGCAGTCTCTAGTTGGTCTGTTGGAAGATGGTAGTCTGGCCAAGACGGGT
GTTGGGATCAAGGGTGACTGCACACGGCTCCAGCGGTTCTTTGGCGTAGA
TGTACAAAACGTTGTAGATCTACCCAGTCTAGCGTTGCAGCGCAAAGTGG
ATGTGGGCCCGAGGCGGGGCCTGGCCGACTTGTGCCTTCACCTGCTGGGG
AAAAGTCTGGAGAAACAGCAGCATCTGAGACTTTCGCGCTGGAACATCAC
GGCGCTATCGAGGGAGCAGAAAGGGACCCTCCCAATCCACCCGCCACGAT
TCAGTTGGCTGCAGGCAGTGTCGTGATCATTTTTCATGTCCTGCATGGGC
AACGCCAGTCTCCGGATAAGCTACCGCAGTCTCTAGTTGGTCTGTTGGAA
GATGGTAGTCTGGCCAAGACGGGTGTTGGGATCAAGGGTGACTGCACACG
GCTCCAGCGGTTCTTTGGCGTAGATGTACAAAACGTTGTAGATCTACCCA
GTCTAGCGTTGCAGCGCAAAGTGGATGTGGGCCCGAGGCGGGGCCTGGCC
GACTTGTGCCTTCACCTGCTGGGGAAAAGTCTGGAGAAACAGCAGCATCT
GAGACTTTCGCGCTGGAACATCACGGCGCTATCGAGGGAGCAGAAAGGGT
ATGCTGCCCGCGATGCGTATGTGGCGTACCTGTTGTTTGGGCGCATCTCG
GAGCTTTCGGACCCGATTTTCAAGGATGCAGAGGAGCTGCATATCGGAGA
CCCCGTTCGTCTTTACACGCGGGGGGGAAATGATTGCGTGGGAGAAGGCC
GTATCATCGCGTACGGCCAAGAGACATGGGGGTCCACGGGAATTCTCCTC
GCACCTCGACATGCTACGCGCGGCCATAGTCGACGGTGGGTGGTGCGTAT
ATCGAAAGTGCACGTGTCGCTCGCTAGCACGTTGTATCCAGACGAGACCG
CTGTACCTGGAACCCAGCCGACCGCGCATGTGGGAGACCGGGTGGATCAG
ACTCTGCTGTGGGACGCAGCACGCATGCGAAAGGCAGCTGCCGGCGCTGG
AGATGGAGGGAGGGGCGCAACTCCCGTGGCTGCAGCTTTGATTCAAGACG
CTAGGCCACGTTCTGAGCAGGGAGCCGTGTCCACGGCAGCCGAGGTGTCG
AGTGCGACCGCTGCCGGCTTCAGGACTCCTTCGGAGCCCTTCTTTGCTGG
GCAGTTTTCCGGGATCGAAGCGCTGAGCGCTGAGGTTGTGTCTGCTATGA
ATGCGTGGGTGAACCACTTGGACGTTCGGGGTGTGGCGCCGCGCAGCGAC
ACATCGGGGGGTGGAGGCGAGGCTAAAGGTGTATGCTGCCCGCGATGCGT
ATGTGGCGTACCTGTTGTTTGGGCGCATCTCGGAGCTTTCGGACCCGATT
TTCAAGGATGCAGAGGAGCTGCATATCGGAGACCCCGTTCGTCTTTACAC
GCGGGGGGGAAATGATTGCGTGGGAGAAGGCCGTATCATCGCGTACGGCC
AAGAGACATGGGGGTCCACGGGAATTCTCCTCGCACCTCGACATGCTACG
CGCGGCCATAGTCGACGGTGGGTGGTGCGTATATCGAAAGTGCACGTGTC
GCTCGCTAGCACGTTGTATCCAGACGAGACCGCTGTACCTGGAACCCAGC
CGACCGCGCATGTGGGAGACCGGGTGGATCAGACTCTGCTGTGGGACGCA
GCACGCATGCGAAAGGCAGCTGCCGGCGCTGGAGATGGAGGGAGGGGCGC
AACTCCCGTGGCTGCAGCTTTGATTCAAGACGCTAGGCCACGTTCTGAGC
AGGGAGCCGTGTCCACGGCAGCCGAGGTGTCGAGTGCGACCGCTGCCGGC
TTCAGGACTCCTTCGGAGCCCTTCTTTGCTGGGCAGTTTTCCGGGATCGA
AGCGCTGAGCGCTGAGGTTGTGTCTGCTATGAATGCGTGGGTGAACCACT
TGGACGTTCGGGGTGTGGCGCCGCGCAGCGACACATCGGGGGGTGGAGGC
GAGGCTAAAGGT
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