mRNA_P-fluviatile_contig12.1452.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Match: D8LPZ3_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ3_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.900e-36 Identity = 113/211 (53.55%), Postives = 133/211 (63.03%), Query Frame = 1
Query: 670 LLLCKELRSICKIWMRNRRGILAAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAVGAGQGRDXXXXXKMAKLYYHLLNEKTLKQKLTEVGLPVGGGKTAMIARHKRLALLDAASSDREVPVPRRELIRQVASWEREKDKEKLAATKAARS-----AAGGTLSSPVAPTPASGASAADESVGDSAPPQEKVVIPKEMQAGFSALIANAR 1287
L L KELRSIC W NRR ILAAA+A XXXXXXXXXXXX A+GAGQGR A ++YH LN+ +K L VGLPVGGGK AM+ARHKRL LL AAS+DREVP+P+ +L+RQVA+WEREKDKE++A K AR+ +AG S A PA P EK+VI KEM+ GFSALIA+AR
Sbjct: 2 LQLSKELRSICTTWKHNRRAILAAANASAXXXXXXXXXXXXREQPAPSGRRKVC--AIGAGQGRVGDGGVVKA-VHYHSLNDSKMKALLIRVGLPVGGGKAAMVARHKRLVLLSAASNDREVPLPKAQLLRQVAAWEREKDKERMANAKTARAGLVSGSAGSGGGSRQALRPAGTGGXXXXXXXXXXPESEKIVISKEMKDGFSALIASAR 209
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.220e-18 Identity = 154/493 (31.24%), Postives = 207/493 (41.99%), Query Frame = 1
Query: 1561 GSDMRILGVAGRMVRTHGPWRCVFSRGELPLPLEGENRSNDATXXXXXXXXXXXXXXXXXXCAPSHKAPGMPFSVQTYGAEEKPDEALLAS------KNKSASSIG----RPSGSSSSNSSGGDGSTPSRGQVQVQGGQSAVVEADSRSDDGGHDGSGPA-GRGGDKKDVLTAEALKG--EGLLYLNTVTGESRREPPLELVARAEEAENAGEYLVFVPHCRFIAAAXXXXXXTPVADSS----ACAFGSNEARATVDG----------------------------ARVA-AAAAVGAAADNVLQSTIGELRSCAREGADFEGQAAVSPRRGSARRQLLGARTPPTASKPGAASSSSSTPFGSSRNGSGSGSRCAGG---------------------ETRERLASLDMIDLSQGEVTAAAVDFEKAGIGSECGGGGVGGDGEGXXXXXXXXXXXSVERASGSGAAMWACEACTLLNKARRTTCLVCAASRP 2838
G ILGVAGR+VRT GPWRC+FS+G P GE R+N XXXXXXXXX A M +T G + + AL ++ +N +S G SG ++ + GGDG + S+ ++ +VV A + G GSG RGG +++ G +G +YLNT T E+ REPP ELVA A++AE+AG+YLVFVP RF+AAA + +S A AF + V+ AR++ A +AVGAA + + SC+ +G P + G + T GS S + S A T +RL+SL IDLSQG V +A +D E AG G GG+ + + A W C ACTL NKARRTTC +C SRP
Sbjct: 266 GDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAAGVMXXXXXXXXXXXXXXAAGVM---RRTEGCKSAGERALRSAGGYGVERNGGCASNGVGESNGSGVGAAATVGGDGRSGSKTTQEL-----SVVAAAAEDGRAGFGGSGEGRDRGGGQEEAARPVREPGADQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPAPASSHNSNVAAAPAFSHCSSNMDVESNXXXXXXXXXXXXXXXXXXXXXXAAVTVARMSEATSAVGAAGEREQPAVTAASESCSPXXXXXXXXXXXXXXXXXXXXXXVG----PNPRRNGRGEQAQDTQQGSPLEASTTLSTVAKAVLGXXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQG-VASAPLDVENAG--------GTGGN------------------KAVTVATTWTCVACTLTNKARRTTCELCGTSRP 719
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Match: D8LPZ5_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ5_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 8.430e-9 Identity = 97/299 (32.44%), Postives = 128/299 (42.81%), Query Frame = 1
Query: 2095 ESRREPPLELVARAEEAENAGEYLVFVPHCRFIAAAXXXXXXT-----------PV-----------------ADSSACAFGSN---EARATVDGARVA-AAAAVGAAADNVLQSTIGELRSCAREGADFEGQAAVSPRR-----------GSARRQLLGARTPPTASKPGAASSSSSTPFGSSRNGSGSGSRCAGGE--------TRERLASLDMIDLSQGEVTAAAVDFEKAGIGSECGGGGVGGDGEGXXXXXXXXXXXSVERASGSGAAMWACEACTLLNKARRTTCLVCAASRP 2838
E+ REPP ELVA A++AE+AG+YLVFVP RF+AAA + PV A +SA + SN ++ A V AR++ AA+AV AAA+ VLQ+ SC+ + RR G + T + G +S+TP ++ G T +RL+SL IDLSQG V +A VD E GGG GG+ + + A W C ACTL NK+RRTTC VC SRP
Sbjct: 2 ETAREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSNVAAAPVFSHRSSNMDVDGNGSNPAAASALSHNSNMDTDSNAAVTVARMSEAASAVVAAAERVLQAVTAAGESCSPXXXXXXXXXXXXXXXXXXXXXXXXXGSNTRRNSRGEQAQDT--QQGLPLEASTTPSTVAKAVLGXXXXXXXXXXXXXXXXGTWDRLSSLPTIDLSQG-VASAPVDVEN--------GGGAGGN------------------KAVTVATTWTCVACTLTNKSRRTTCEVCGTSRP 271
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Match: A0A3M7NDG4_9EURO (Postreplication repair E3 ubiquitin-protein ligase RAD18 (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7NDG4_9EURO) HSP 1 Score: 60.5 bits (145), Expect = 7.250e-6 Identity = 56/220 (25.45%), Postives = 87/220 (39.55%), Query Frame = 1
Query: 508 IESLLRCAICGGISDPPVSLPCCQQTFCSLCIRQYLDSTTPRCPCCRKASASNQLLLCKELRSICKIWMRNRRGILAAADAXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------LAVGAGQ----GRDXXXXXKMAKLYYHLLNEKTLKQKLTEVGLPVGGGKTAMIARHKRLALLDAASSDREVPVPRRELIRQVASWER 1083
IES LRC +C P+ + C TFCSLCIR+YL S +CP CR+ +L ++ + ++ R G+L A A L + AG ++ + Y+LLNE L+ KL ++G+ G + M RH L A+ D + + +R+L+RQ+ +WER
Sbjct: 22 IESSLRCQVCKDFYTTPM-MTSCSHTFCSLCIRRYL-SQEGKCPACREPDQEIRLRRNWAVQELVAGFVEARDGLLGFARAMAAGKADATAVYEDEPQPDGFVACPSCSRRIKEAVINAHLDRCLSGTAAPQPLQIQAGTLVYAQNKPSSMSRLPTINYNLLNESKLRSKLRDLGIRSTGSRELMSKRHTEWVNLWNANCDSQQQLSKRDLLRQLDTWER 239
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Match: A0A369JX04_HYPMA (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JX04_HYPMA) HSP 1 Score: 58.2 bits (139), Expect = 7.240e-5 Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 1
Query: 472 YPKAGLGPAFASIESLLRCAICGGISDPPVSLPCCQQTFCSLCIRQYLDSTTPRCPCCRKASASNQLLLCKELRSICKIWMRNRRGIL 735
+P P +++S LRC ICG + D PV+LPC FCS+C+R + CP CRKA+ L L + W +R IL
Sbjct: 15 FPPLADAPGLRTLDSSLRCTICGELFDAPVTLPC-GHCFCSVCVRAAMG-IKQECPTCRKATLEGHLRPNPVLEEVVAAWGLSRPYIL 100 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1452.1 >prot_P-fluviatile_contig12.1452.1 ID=prot_P-fluviatile_contig12.1452.1|Name=mRNA_P-fluviatile_contig12.1452.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=971bp MSASVASGGPAVAGAEEQQLDEQDDDEIYQYPKAGLGPAFASIESLLRCAback to top mRNA from alignment at P-fluviatile_contig12:1868016..1876917- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1452.1 ID=mRNA_P-fluviatile_contig12.1452.1|Name=mRNA_P-fluviatile_contig12.1452.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=8902bp|location=Sequence derived from alignment at P-fluviatile_contig12:1868016..1876917- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:1868016..1876917- >mRNA_P-fluviatile_contig12.1452.1 ID=mRNA_P-fluviatile_contig12.1452.1|Name=mRNA_P-fluviatile_contig12.1452.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=5826bp|location=Sequence derived from alignment at P-fluviatile_contig12:1868016..1876917- (Porterinema fluviatile SAG_2381)back to top |