mRNA_P-fluviatile_contig12.1443.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI) HSP 1 Score: 463 bits (1191), Expect = 2.490e-157 Identity = 283/390 (72.56%), Postives = 308/390 (78.97%), Query Frame = 1
Query: 175 KDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKDGDAPTGGGWDSSSSRGTGRDVRN-GGAYTSRGGGGIARSATGAWGKKA-IRIRKGVGAPMSRGDYAARLKAQRRAR 1338
KDP +MRLSRRIARSGIASRREAER++E GVV VNGA VQTPA NVGPRDIVKV VG + V GK L+ E HTPKLWMVHK RNELV+R+DP+GRPTVFDRL KLKLPDTLMP+GRLDYNTEGLLLLTNDG+LARKMELP SNIVRTYSVRVYGNITEEKLRAMR+GCTI+GVRY GMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYL LTVNRLARTRYGPFSLGKVR+GGVA VEIPK+FMRRLE+ GSP GG XXXXXXXXXXXXXXXXXXX + +P G S++ G GRD + G+ R GG R A +WG+K RIRKGVGAPMSRGD +AR AQ+RAR
Sbjct: 108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGSP--GGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSP---GTGLSNTVGGGRDTGDRAGSSGGRHWGGGFRGAGRSWGEKGGPRIRKGVGAPMSRGDNSARPTAQQRAR 490
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE) HSP 1 Score: 252 bits (643), Expect = 2.220e-77 Identity = 135/190 (71.05%), Postives = 151/190 (79.47%), Query Frame = 1
Query: 157 LEAQQMKDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLR-----------RVEFASSL-------NTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGN 672
L ++KDP +MRLSRRIARSGIASRREAER++E GVV VNGA VQTPA NVGPRDIVKV VG L+ +V+F + L +T GK L+ E HTPKLWMVHK RNELV+R+DP+GRPTVFDRLAKLKLPDTLMP+GRLDYNTEGLLLLTNDG+LARKMELP SNIVRTYSVRVYGN
Sbjct: 102 LPPPKIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGN 291
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA) HSP 1 Score: 243 bits (620), Expect = 8.440e-72 Identity = 141/320 (44.06%), Postives = 187/320 (58.44%), Query Frame = 1
Query: 94 GQGDNILDQSAVATTDCDTDMLEAQQM-----KDPFMMRLSRRIARSGIASRREAERLIEEGVVT--------------VNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSP 996
G+ +L++ V + + E Q K +MRL++RIARSG +SRREAERLI+EG V +NGA +PA NV D V+V GK L S ++W VHK R ELV+R+D KGR V +R+ + L D L P+GRLD+ TEGLLLLT+DG+LARK+E P + R Y VRV+G++T EKLR M+ GC IEGV Y GM V ++ G E N WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ SGGVA V + + F++++ A G P
Sbjct: 3 GRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVD------------------GKEL-STHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVP 298
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A7C5SFA6_9PROT (Pseudouridine synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT) HSP 1 Score: 202 bits (515), Expect = 5.740e-59 Identity = 125/275 (45.45%), Postives = 160/275 (58.18%), Query Frame = 1
Query: 193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTL---MPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIGG 1008
RL+RRIAR+G+ SRR AE LI EG V VNG V TPA NV D+V V G L S +LW HK +VS D KGRPTVF+RL P L + +GRLD N+EGLLLLTNDG LAR++ELP + R Y VR +G +T++ L A+R+G TI+GV Y + +++ EG N W+T EGKNR+IR+IC++L L VNRL RT YGPF LG+++ G +A V R+L E A +IGG
Sbjct: 7 RLARRIARAGVCSRRAAEELIREGRVMVNGETVTTPAVNVTADDVV------------------VVDGAPLPSPAP--VRLWRYHKPCGLIVSERDEKGRPTVFERL-----PGDLGRVISVGRLDLNSEGLLLLTNDGALARRLELPATGWTRRYRVRAFGCVTQDALAALRDGLTIDGVHYGKIVAKLDTA-----EGANVWMTFALKEGKNREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEVSP-----RQLREQLGAIWRDIGG 246
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A2E7QVJ7_9PROT (Pseudouridine synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QVJ7_9PROT) HSP 1 Score: 202 bits (513), Expect = 2.990e-58 Identity = 113/258 (43.80%), Postives = 158/258 (61.24%), Query Frame = 1
Query: 172 MKDPFMM--RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
MKDP R+++R++RSGI SRREAER + +G VTV+G + PA V + I+ TV GK + E PKLW HK R L + +DP+ RPTVFD L K LP ++ +GRLD+N+EGLLLLTNDG LAR +ELP + +R Y VR YG + E +L ++ G T++G++Y G+ +++ R+G N+W+T+ EGKNR+IRK+ +Y+ L VNRL R YGPF LG++ V V
Sbjct: 1 MKDPKKKGERIAKRLSRSGICSRREAERWLADGRVTVDGEQISKPATLVTDQSII------------------TVDGKRIAQPEQ--PKLWRYHKPRGVLSTNSDPENRPTVFDHLPK-NLPRVML-VGRLDFNSEGLLLLTNDGELARSLELPSTGWIRQYRVRAYGPLDESRLVSLAGGITVDGIKYQGIQAQLDK-----RQGDNSWITVSLQEGKNREIRKVMEYIGLRVNRLIRIAYGPFQLGELHRDAVREV 231
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: UPI0019C5EFD9 (rRNA pseudouridine synthase n=1 Tax=Kordiimonas sediminis TaxID=1735581 RepID=UPI0019C5EFD9) HSP 1 Score: 204 bits (518), Expect = 3.610e-58 Identity = 118/276 (42.75%), Postives = 170/276 (61.59%), Query Frame = 1
Query: 193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTL---MPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV------EIPKSFMRRLEEATAAGS 993
R+++ +AR+G+ SRR+ ER+I +G +TVNG ++TPA V +SL+ + TV G + SV D +LW +HK + L + DP+GRPTVFD+L PD L + +GRLD NTEGLLLLTNDG LAR +ELP + +VR Y VRVYG++ E L+ +++G TI+GV Y + +E GG N+WL++ EGKNR++R++ ++L LTVNRL RT YGPFS+G + G VA V ++ +F R + + A S
Sbjct: 21 RIAKALARAGVGSRRDIERMITDGRITVNGEILKTPAVLV-----------DSLKGI-------TVDGNEIASVSD--TRLWRMHKRKGTLTTHKDPEGRPTVFDQL-----PDRLGRVISVGRLDMNTEGLLLLTNDGELARWLELPQNEVVRRYRVRVYGHVRENDLKKLKDGVTIDGVHYGSIDAVLEQGGAA-----NSWLSVAIREGKNREVRRVMEHLGLTVNRLIRTHYGPFSIGTLNPGAVAEVSNKQLHDMLAAFFREEKSSLVAPS 266
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A7Y0HI03_9PROT (Pseudouridine synthase n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HI03_9PROT) HSP 1 Score: 204 bits (519), Expect = 4.920e-58 Identity = 118/264 (44.70%), Postives = 162/264 (61.36%), Query Frame = 1
Query: 178 DPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRL 969
D RL++RIAR+G+ SRR+AER IE G V VNG V++PA NVGP D V TV GK L E+ +LW HK +VS D KGR T+F++L + ++P ++ +GRLD N+EGLLLLTNDG+LARK+ELP + VR Y VRV+G + +L ++ +G T+EGVRY + +E ++G NAW+++ TEGKNR++RK+ ++L VNRL R YGPF LG + G V E+ MR L
Sbjct: 20 DTTGQRLAKRIARAGLCSRRDAERWIETGRVAVNGVVVESPALNVGPSDTV------------------TVDGKDLP--EEQAARLWRYHKPAGLVVSARDEKGRATIFEKLPR-EMP-RVVSVGRLDLNSEGLLLLTNDGDLARKLELPATGWVRRYRVRVHGRVDPARLASLEHGVTVEGVRYGSIRAELEK-----QQGSNAWVSVALTEGKNREVRKVMEHLGYPVNRLLRLSYGPFQLGPLPRGMVE--EVSAKVMRDL 254
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A4S3MB58_9RHOB (Pseudouridine synthase n=1 Tax=Youngimonas vesicularis TaxID=1294297 RepID=A0A4S3MB58_9RHOB) HSP 1 Score: 204 bits (519), Expect = 4.920e-58 Identity = 119/249 (47.79%), Postives = 157/249 (63.05%), Query Frame = 1
Query: 193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
R+++ IARSG ASRREAE+LI EG VTVNGA + +PA NV PRD + TV G+ L + E P+LW+ HK + + D +GR T+FD+L + LP +M +GRLD N+EGLLLLTNDG + RK+ELP + +R Y VRV G +TEE L +R G T EGV Y M V ++ ++G NAWLT+ EGKNR+IR+ + + LTVNRL RT YGPF LG+++ G V V
Sbjct: 10 RIAKIIARSGRASRREAEKLIAEGRVTVNGAQIDSPALNVTPRDRI------------------TVDGQPLAAAEP--PRLWLYHKPAGLVTTTRDEQGRDTIFDKLPE-DLP-RVMSVGRLDLNSEGLLLLTNDGEVKRKLELPSTGWLRKYRVRVNGKVTEEILEPLRKGITHEGVTYQPMIVSLDR-----QQGANAWLTVGLREGKNREIRRAMEAINLTVNRLIRTSYGPFLLGQLKPGEVEEV 231
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A6I4UPS4_9SPHN (Pseudouridine synthase n=1 Tax=Croceibacterium soli TaxID=1739690 RepID=A0A6I4UPS4_9SPHN) HSP 1 Score: 200 bits (509), Expect = 2.230e-57 Identity = 120/281 (42.70%), Postives = 163/281 (58.01%), Query Frame = 1
Query: 169 QMKDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDT--LMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIG 1005
Q + P R+++ +AR+G+ASRRE ER+I EG V +NGA +QT A V +LR V TV G + S E +L+ HK L + DPKGRPT+++ LA D LMP+GRLD NTEGLLLLTNDG L R MELP S + RTY R +G +++ +L ++ +G TIEGVRY + +E R GRN W+ + TEGKNR++R++ ++L L V+RL RT YGPF LG + G A E+ K + R + SP G
Sbjct: 3 QGEKPEGERIAKLLARAGVASRREVERMIAEGRVALNGATLQTSATIVP-----------NLRGV-------TVDGNPVGSAE--RTRLYRFHKPAGLLTAERDPKGRPTIYNALANALPKDAPRLMPVGRLDLNTEGLLLLTNDGELKRAMELPASEVPRTYRARTFGEVSQAQLESLMDGITIEGVRYGPIDANLER-----RTGRNQWIELTLTEGKNREVRRVLEHLGLQVSRLLRTSYGPFELGDLPKG--AAEEVKKHELERFQSTLKKSSPARG 256
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: UPI0018831775 (rRNA pseudouridine synthase n=1 Tax=Kordiimonas pumila TaxID=2161677 RepID=UPI0018831775) HSP 1 Score: 201 bits (510), Expect = 3.820e-57 Identity = 111/249 (44.58%), Postives = 156/249 (62.65%), Query Frame = 1
Query: 193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
R+++ +AR+GIASRRE ER+I +G V+V+G + TPA V D +KV G+ + V + KLW +HK R L + DP+GRPTVF++L ++ +GRLD NTEGLLLLTNDG LAR +ELP + ++R Y VRV+G + E L +++NG TIEG Y + +E + +EG NAW+T+ EGKNR++R++ ++L L VNRL RT YGPFSLG + G VA+V
Sbjct: 17 RIAKALARAGIASRREVERMIADGRVSVDGKKLDTPAFLVTTLDGIKVD------------------GEAITQVSE--TKLWRMHKRRGTLTTHRDPEGRPTVFEKLPTHM--GRVISVGRLDMNTEGLLLLTNDGELARWLELPKNEVIRRYRVRVHGRVDERILASLKNGLTIEGTHYGSIEASLE----RQQEGANAWVTVAIREGKNREVRRVMEHLGLAVNRLIRTHYGPFSLGTLTDGTVAQV 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig12.1443.1 >prot_P-fluviatile_contig12.1443.1 ID=prot_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=447bp GAARGVGDVPGTEENAFEDKNDDDDDDDDDEGQGDNILDQSAVATTDCDTback to top mRNA from alignment at P-fluviatile_contig12:1734389..1737979- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig12.1443.1 ID=mRNA_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3591bp|location=Sequence derived from alignment at P-fluviatile_contig12:1734389..1737979- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig12:1734389..1737979- >mRNA_P-fluviatile_contig12.1443.1 ID=mRNA_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2682bp|location=Sequence derived from alignment at P-fluviatile_contig12:1734389..1737979- (Porterinema fluviatile SAG_2381)back to top |