mRNA_P-fluviatile_contig12.1443.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig12.1443.1
Unique NamemRNA_P-fluviatile_contig12.1443.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 463 bits (1191), Expect = 2.490e-157
Identity = 283/390 (72.56%), Postives = 308/390 (78.97%), Query Frame = 1
Query:  175 KDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKDGDAPTGGGWDSSSSRGTGRDVRN-GGAYTSRGGGGIARSATGAWGKKA-IRIRKGVGAPMSRGDYAARLKAQRRAR 1338
            KDP +MRLSRRIARSGIASRREAER++E GVV VNGA VQTPA NVGPRDIVKV VG   +          V GK L+  E HTPKLWMVHK RNELV+R+DP+GRPTVFDRL KLKLPDTLMP+GRLDYNTEGLLLLTNDG+LARKMELP SNIVRTYSVRVYGNITEEKLRAMR+GCTI+GVRY GMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYL LTVNRLARTRYGPFSLGKVR+GGVA VEIPK+FMRRLE+    GSP  GG XXXXXXXXXXXXXXXXXXX               +  +P   G   S++ G GRD  +  G+   R  GG  R A  +WG+K   RIRKGVGAPMSRGD +AR  AQ+RAR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGRPTVFDRLTKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGNITEEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDG--GGSP--GGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSP---GTGLSNTVGGGRDTGDRAGSSGGRHWGGGFRGAGRSWGEKGGPRIRKGVGAPMSRGDNSARPTAQQRAR 490          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 2.220e-77
Identity = 135/190 (71.05%), Postives = 151/190 (79.47%), Query Frame = 1
Query:  157 LEAQQMKDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLR-----------RVEFASSL-------NTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGN 672
            L   ++KDP +MRLSRRIARSGIASRREAER++E GVV VNGA VQTPA NVGPRDIVKV VG  L+           +V+F + L       +T  GK L+  E HTPKLWMVHK RNELV+R+DP+GRPTVFDRLAKLKLPDTLMP+GRLDYNTEGLLLLTNDG+LARKMELP SNIVRTYSVRVYGN
Sbjct:  102 LPPPKIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGRPTVFDRLAKLKLPDTLMPVGRLDYNTEGLLLLTNDGDLARKMELPSSNIVRTYSVRVYGN 291          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A835ZDT5_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT5_9STRA)

HSP 1 Score: 243 bits (620), Expect = 8.440e-72
Identity = 141/320 (44.06%), Postives = 187/320 (58.44%), Query Frame = 1
Query:   94 GQGDNILDQSAVATTDCDTDMLEAQQM-----KDPFMMRLSRRIARSGIASRREAERLIEEGVVT--------------VNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSP 996
            G+   +L++  V   +   +  E Q       K   +MRL++RIARSG +SRREAERLI+EG V               +NGA   +PA NV   D V+V                   GK L S      ++W VHK R ELV+R+D KGR  V +R+  + L D L P+GRLD+ TEGLLLLT+DG+LARK+E P   + R Y VRV+G++T EKLR M+ GC IEGV Y GM V ++ G     E  N WL + C EGKN QIR++C++L LTVNRL RT +GPF LGK+ SGGVA V + + F++++  A   G P
Sbjct:    3 GRASKVLEEGVVNGGNSGEEHAELQPQRQRTRKQHEVMRLAKRIARSGKSSRREAERLIQEGRVKPRRYLYHLQLLLSLINGAVALSPAVNVSTADRVRVD------------------GKEL-STHIAPARVWAVHKARGELVARSDEKGRRCVLERVKAVGLSDALKPVGRLDFMTEGLLLLTDDGDLARKLEHPTVGLRREYRVRVFGSVTAEKLRTMQRGCVIEGVHYKGMVVNIDRG-----EKHNTWLVVHCVEGKNNQIRRVCQHLNLTVNRLIRTAFGPFKLGKMASGGVAEVPLHEQFLKQVNTAMETGVP 298          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A7C5SFA6_9PROT (Pseudouridine synthase n=1 Tax=Thermopetrobacter sp. TaxID=2268141 RepID=A0A7C5SFA6_9PROT)

HSP 1 Score: 202 bits (515), Expect = 5.740e-59
Identity = 125/275 (45.45%), Postives = 160/275 (58.18%), Query Frame = 1
Query:  193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTL---MPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIGG 1008
            RL+RRIAR+G+ SRR AE LI EG V VNG  V TPA NV   D+V                   V G  L S      +LW  HK    +VS  D KGRPTVF+RL     P  L   + +GRLD N+EGLLLLTNDG LAR++ELP +   R Y VR +G +T++ L A+R+G TI+GV Y  +  +++       EG N W+T    EGKNR+IR+IC++L L VNRL RT YGPF LG+++ G +A V       R+L E   A   +IGG
Sbjct:    7 RLARRIARAGVCSRRAAEELIREGRVMVNGETVTTPAVNVTADDVV------------------VVDGAPLPSPAP--VRLWRYHKPCGLIVSERDEKGRPTVFERL-----PGDLGRVISVGRLDLNSEGLLLLTNDGALARRLELPATGWTRRYRVRAFGCVTQDALAALRDGLTIDGVHYGKIVAKLDTA-----EGANVWMTFALKEGKNREIRRICEHLGLKVNRLIRTAYGPFQLGRLKRGALAEVSP-----RQLREQLGAIWRDIGG 246          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A2E7QVJ7_9PROT (Pseudouridine synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QVJ7_9PROT)

HSP 1 Score: 202 bits (513), Expect = 2.990e-58
Identity = 113/258 (43.80%), Postives = 158/258 (61.24%), Query Frame = 1
Query:  172 MKDPFMM--RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
            MKDP     R+++R++RSGI SRREAER + +G VTV+G  +  PA  V  + I+                  TV GK +   E   PKLW  HK R  L + +DP+ RPTVFD L K  LP  ++ +GRLD+N+EGLLLLTNDG LAR +ELP +  +R Y VR YG + E +L ++  G T++G++Y G+  +++      R+G N+W+T+   EGKNR+IRK+ +Y+ L VNRL R  YGPF LG++    V  V
Sbjct:    1 MKDPKKKGERIAKRLSRSGICSRREAERWLADGRVTVDGEQISKPATLVTDQSII------------------TVDGKRIAQPEQ--PKLWRYHKPRGVLSTNSDPENRPTVFDHLPK-NLPRVML-VGRLDFNSEGLLLLTNDGELARSLELPSTGWIRQYRVRAYGPLDESRLVSLAGGITVDGIKYQGIQAQLDK-----RQGDNSWITVSLQEGKNREIRKVMEYIGLRVNRLIRIAYGPFQLGELHRDAVREV 231          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: UPI0019C5EFD9 (rRNA pseudouridine synthase n=1 Tax=Kordiimonas sediminis TaxID=1735581 RepID=UPI0019C5EFD9)

HSP 1 Score: 204 bits (518), Expect = 3.610e-58
Identity = 118/276 (42.75%), Postives = 170/276 (61.59%), Query Frame = 1
Query:  193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTL---MPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV------EIPKSFMRRLEEATAAGS 993
            R+++ +AR+G+ SRR+ ER+I +G +TVNG  ++TPA  V           +SL+ +       TV G  + SV D   +LW +HK +  L +  DP+GRPTVFD+L     PD L   + +GRLD NTEGLLLLTNDG LAR +ELP + +VR Y VRVYG++ E  L+ +++G TI+GV Y  +   +E GG       N+WL++   EGKNR++R++ ++L LTVNRL RT YGPFS+G +  G VA V      ++  +F R  + +  A S
Sbjct:   21 RIAKALARAGVGSRRDIERMITDGRITVNGEILKTPAVLV-----------DSLKGI-------TVDGNEIASVSD--TRLWRMHKRKGTLTTHKDPEGRPTVFDQL-----PDRLGRVISVGRLDMNTEGLLLLTNDGELARWLELPQNEVVRRYRVRVYGHVRENDLKKLKDGVTIDGVHYGSIDAVLEQGGAA-----NSWLSVAIREGKNREVRRVMEHLGLTVNRLIRTHYGPFSIGTLNPGAVAEVSNKQLHDMLAAFFREEKSSLVAPS 266          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A7Y0HI03_9PROT (Pseudouridine synthase n=1 Tax=Pacificispira spongiicola TaxID=2729598 RepID=A0A7Y0HI03_9PROT)

HSP 1 Score: 204 bits (519), Expect = 4.920e-58
Identity = 118/264 (44.70%), Postives = 162/264 (61.36%), Query Frame = 1
Query:  178 DPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRL 969
            D    RL++RIAR+G+ SRR+AER IE G V VNG  V++PA NVGP D V                  TV GK L   E+   +LW  HK    +VS  D KGR T+F++L + ++P  ++ +GRLD N+EGLLLLTNDG+LARK+ELP +  VR Y VRV+G +   +L ++ +G T+EGVRY  +   +E      ++G NAW+++  TEGKNR++RK+ ++L   VNRL R  YGPF LG +  G V   E+    MR L
Sbjct:   20 DTTGQRLAKRIARAGLCSRRDAERWIETGRVAVNGVVVESPALNVGPSDTV------------------TVDGKDLP--EEQAARLWRYHKPAGLVVSARDEKGRATIFEKLPR-EMP-RVVSVGRLDLNSEGLLLLTNDGDLARKLELPATGWVRRYRVRVHGRVDPARLASLEHGVTVEGVRYGSIRAELEK-----QQGSNAWVSVALTEGKNREVRKVMEHLGYPVNRLLRLSYGPFQLGPLPRGMVE--EVSAKVMRDL 254          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A4S3MB58_9RHOB (Pseudouridine synthase n=1 Tax=Youngimonas vesicularis TaxID=1294297 RepID=A0A4S3MB58_9RHOB)

HSP 1 Score: 204 bits (519), Expect = 4.920e-58
Identity = 119/249 (47.79%), Postives = 157/249 (63.05%), Query Frame = 1
Query:  193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
            R+++ IARSG ASRREAE+LI EG VTVNGA + +PA NV PRD +                  TV G+ L + E   P+LW+ HK    + +  D +GR T+FD+L +  LP  +M +GRLD N+EGLLLLTNDG + RK+ELP +  +R Y VRV G +TEE L  +R G T EGV Y  M V ++      ++G NAWLT+   EGKNR+IR+  + + LTVNRL RT YGPF LG+++ G V  V
Sbjct:   10 RIAKIIARSGRASRREAEKLIAEGRVTVNGAQIDSPALNVTPRDRI------------------TVDGQPLAAAEP--PRLWLYHKPAGLVTTTRDEQGRDTIFDKLPE-DLP-RVMSVGRLDLNSEGLLLLTNDGEVKRKLELPSTGWLRKYRVRVNGKVTEEILEPLRKGITHEGVTYQPMIVSLDR-----QQGANAWLTVGLREGKNREIRRAMEAINLTVNRLIRTSYGPFLLGQLKPGEVEEV 231          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: A0A6I4UPS4_9SPHN (Pseudouridine synthase n=1 Tax=Croceibacterium soli TaxID=1739690 RepID=A0A6I4UPS4_9SPHN)

HSP 1 Score: 200 bits (509), Expect = 2.230e-57
Identity = 120/281 (42.70%), Postives = 163/281 (58.01%), Query Frame = 1
Query:  169 QMKDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDT--LMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIG 1005
            Q + P   R+++ +AR+G+ASRRE ER+I EG V +NGA +QT A  V            +LR V       TV G  + S E    +L+  HK    L +  DPKGRPT+++ LA     D   LMP+GRLD NTEGLLLLTNDG L R MELP S + RTY  R +G +++ +L ++ +G TIEGVRY  +   +E      R GRN W+ +  TEGKNR++R++ ++L L V+RL RT YGPF LG +  G  A  E+ K  + R +      SP  G
Sbjct:    3 QGEKPEGERIAKLLARAGVASRREVERMIAEGRVALNGATLQTSATIVP-----------NLRGV-------TVDGNPVGSAE--RTRLYRFHKPAGLLTAERDPKGRPTIYNALANALPKDAPRLMPVGRLDLNTEGLLLLTNDGELKRAMELPASEVPRTYRARTFGEVSQAQLESLMDGITIEGVRYGPIDANLER-----RTGRNQWIELTLTEGKNREVRRVLEHLGLQVSRLLRTSYGPFELGDLPKG--AAEEVKKHELERFQSTLKKSSPARG 256          
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Match: UPI0018831775 (rRNA pseudouridine synthase n=1 Tax=Kordiimonas pumila TaxID=2161677 RepID=UPI0018831775)

HSP 1 Score: 201 bits (510), Expect = 3.820e-57
Identity = 111/249 (44.58%), Postives = 156/249 (62.65%), Query Frame = 1
Query:  193 RLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTPARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHKTRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDGNLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVRVEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPFSLGKVRSGGVARV 939
            R+++ +AR+GIASRRE ER+I +G V+V+G  + TPA  V   D +KV                   G+ +  V +   KLW +HK R  L +  DP+GRPTVF++L        ++ +GRLD NTEGLLLLTNDG LAR +ELP + ++R Y VRV+G + E  L +++NG TIEG  Y  +   +E    + +EG NAW+T+   EGKNR++R++ ++L L VNRL RT YGPFSLG +  G VA+V
Sbjct:   17 RIAKALARAGIASRREVERMIADGRVSVDGKKLDTPAFLVTTLDGIKVD------------------GEAITQVSE--TKLWRMHKRRGTLTTHRDPEGRPTVFEKLPTHM--GRVISVGRLDMNTEGLLLLTNDGELARWLELPKNEVIRRYRVRVHGRVDERILASLKNGLTIEGTHYGSIEASLE----RQQEGANAWVTVAIREGKNREVRRVMEHLGLAVNRLIRTHYGPFSLGTLTDGTVAQV 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig12.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI2.490e-15772.56RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE2.220e-7771.05S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZDT5_9STRA8.440e-7244.06Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A7C5SFA6_9PROT5.740e-5945.45Pseudouridine synthase n=1 Tax=Thermopetrobacter s... [more]
A0A2E7QVJ7_9PROT2.990e-5843.80Pseudouridine synthase n=1 Tax=Rhodospirillaceae b... [more]
UPI0019C5EFD93.610e-5842.75rRNA pseudouridine synthase n=1 Tax=Kordiimonas se... [more]
A0A7Y0HI03_9PROT4.920e-5844.70Pseudouridine synthase n=1 Tax=Pacificispira spong... [more]
A0A4S3MB58_9RHOB4.920e-5847.79Pseudouridine synthase n=1 Tax=Youngimonas vesicul... [more]
A0A6I4UPS4_9SPHN2.230e-5742.70Pseudouridine synthase n=1 Tax=Croceibacterium sol... [more]
UPI00188317753.820e-5744.58rRNA pseudouridine synthase n=1 Tax=Kordiimonas pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig12contigP-fluviatile_contig12:1734389..1737979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score194.1
Seed ortholog evalue1.4e-46
Seed eggNOG ortholog1090320.KB900605_gene3149
Preferred namerluB
KEGG koko:K06178,ko:K06181,ko:K06182,ko:K06183
EggNOG free text desc.Belongs to the pseudouridine synthase RsuA family
EggNOG OGs1MUCE@1224,2K0YS@204457,2TQP2@28211,COG1187@1,COG1187@2
EC5.4.99.19,5.4.99.20,5.4.99.21,5.4.99.22
COG Functional cat.J
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom
Ec32 orthologEc-15_000880.1
Exons5
Model size1341
Cds size1341
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig12.1443.1prot_P-fluviatile_contig12.1443.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig12 1734389..1737979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.532122-CDS-P-fluviatile_contig12:1734388..17349071622815511.532122-CDS-P-fluviatile_contig12:1734388..1734907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1734389..1734907 -
1693562092.6565526-CDS-P-fluviatile_contig12:1734388..17349071693562092.6565526-CDS-P-fluviatile_contig12:1734388..1734907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1734389..1734907 -
1622815511.5465295-CDS-P-fluviatile_contig12:1735578..17357281622815511.5465295-CDS-P-fluviatile_contig12:1735578..1735728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1735579..1735728 -
1693562092.6709466-CDS-P-fluviatile_contig12:1735578..17357281693562092.6709466-CDS-P-fluviatile_contig12:1735578..1735728Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1735579..1735728 -
1622815511.5622094-CDS-P-fluviatile_contig12:1736463..17365861622815511.5622094-CDS-P-fluviatile_contig12:1736463..1736586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1736464..1736586 -
1693562092.679367-CDS-P-fluviatile_contig12:1736463..17365861693562092.679367-CDS-P-fluviatile_contig12:1736463..1736586Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1736464..1736586 -
1622815511.5765593-CDS-P-fluviatile_contig12:1736919..17370751622815511.5765593-CDS-P-fluviatile_contig12:1736919..1737075Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1736920..1737075 -
1693562092.6874905-CDS-P-fluviatile_contig12:1736919..17370751693562092.6874905-CDS-P-fluviatile_contig12:1736919..1737075Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1736920..1737075 -
1622815511.5898595-CDS-P-fluviatile_contig12:1737586..17379791622815511.5898595-CDS-P-fluviatile_contig12:1737586..1737979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1737587..1737979 -
1693562092.6978695-CDS-P-fluviatile_contig12:1737586..17379791693562092.6978695-CDS-P-fluviatile_contig12:1737586..1737979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig12 1737587..1737979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig12.1443.1

>prot_P-fluviatile_contig12.1443.1 ID=prot_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=447bp
GAARGVGDVPGTEENAFEDKNDDDDDDDDDEGQGDNILDQSAVATTDCDT
DMLEAQQMKDPFMMRLSRRIARSGIASRREAERLIEEGVVTVNGAPVQTP
ARNVGPRDIVKVKVGNSLRRVEFASSLNTVGGKTLDSVEDHTPKLWMVHK
TRNELVSRNDPKGRPTVFDRLAKLKLPDTLMPIGRLDYNTEGLLLLTNDG
NLARKMELPISNIVRTYSVRVYGNITEEKLRAMRNGCTIEGVRYNGMFVR
VEGGGGKGREGRNAWLTIECTEGKNRQIRKICKYLRLTVNRLARTRYGPF
SLGKVRSGGVARVEIPKSFMRRLEEATAAGSPEIGGGGGGGGGNRRRVGP
GPGTGRRRESEAGAAVSISHKDGDAPTGGGWDSSSSRGTGRDVRNGGAYT
SRGGGGIARSATGAWGKKAIRIRKGVGAPMSRGDYAARLKAQRRAR*
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mRNA from alignment at P-fluviatile_contig12:1734389..1737979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig12.1443.1 ID=mRNA_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3591bp|location=Sequence derived from alignment at P-fluviatile_contig12:1734389..1737979- (Porterinema fluviatile SAG_2381)
GGAGCGGCAAGGGGCGTTGGTGATGTCCCGGGGACGGAGGAGAACGCCTT CGAAGACAAGAATGACGACGACGATGACGACGACGACGACGAGGGCCAGG GCGATAACATTCTCGACCAATCGGCAGTAGCGACTACCGACTGCGATACT GATATGCTGGAGGCGCAGCAGATGAAGGACCCTTTCATGATGCGCCTGTC CCGCCGCATCGCGAGGTCGGGCATCGCCTCCCGCCGCGAGGCCGAGCGCC TGATCGAGGAAGGGGTGGTGACGGTCAACGGCGCGCCAGTGCAGACCCCG GCCCGAAACGTCGGCCCTCGAGACATCGTTAAGGTCAAGGTGGGTAATTC GCTGCGTCGAGTGGAGTTTGCGTCGTCGCTTAATACGGTTGGCGTGATTC ACCAACAATCGGAAATGAATGCACGGCGCGACAGGAGACGACACGGATTT TGGGTAGCGTTTGGAGCTGCACAGGCCAGCTTTTTTTTCAATTTTGCGCT GCGCGTACGCTCAGGGAATACGACAGAACGGCAAGCAGGCTCGTACCTCA GTCGTTTCGTCATTGCAAGGAGCATTGGTTGAAATGTCGATATTTCTTCT CTGGGTATGCCTCGCTCCATCAAAACCAAACACATCAACATATTTTCAAG CTCATTGCATCAGCCGCAGTCGCCCCCCACTGTACGGAAGCACATCGTGC TGTTTCGTTCAGGTTGTGCTCGTCGGGTTCAGGCGAAGATAAGGAAGCAT CCTGCATGCGCGACGCGGAGGTAGTGCTCGAATTTGATGCTCTCTGATCG AGGACGGCCGCGCAGCCCCTTAGTCTGTTTGAGCGTTCCTTTGTTGTGTA CTTTAACATTCTCGTTGTGCTTGTGTGTGCCGTGCATCGATCGTCTCTCG CCAGGGCAAGACGCTCGATAGTGTGGAGGATCACACGCCGAAGCTTTGGA TGGTGCACAAGACGAGGAACGAGTTGGTCAGCAGGAATGACCCAAAGGGG CGACCGACCGTTTTCGACAGGCTGGCCAAGCTCAAGTTGCCGGACACGCT GATGCCCATCGTGCGTTCACATTGCTTTTGGTTGTTTGGATCCACCGAGT ACTGGTATTTGTCTACTGCAGTCGTGCGCAATTTTGATTTCGCTGTGCCC GAGGGTTATCGAATCGGCAAGCAAATGTAGATGCTTTTGGTGCGGTGTTG CGGTCTTGGAAAATTGCAGCTACAAAACCTGCACCGCAGCTGTGCGTGGC AGCTTTTCGTGTTCCCGGTGGGCCAGATCCGAGCCGAGGGTACTCACATG GCGATCGCGAATACTGTAAATGACGTCTTGCGATGCTTCCGCAAAGCCTC CAGCCACTTAACTCATGTTTGACCCCCCTTCATTGTCCGATAGGGCCGGC TGGACTACAACACCGAGGGCCTCTTGCTGCTGACCAACGACGGGAACCTG GCCCGCAAGATGGAGCTGCCGATTAGCAATATCGTTAGGACCTACTCCGT CCGCGTGTACGGCAATGTGAGCGGCCCCGTGTCGCGATGTTTTTGTTGTT GATGTTTCTCTATGGGGAAGTACCCAGCGGGTCAAGCGAGGGTTGACCAG CGAAGGCAAGGTACGAGCGAGATCTCGAGGGGGTGCTGTCGTATACCTCT TAGAATCATGACCCTGCATCGTTTGCAGAGATGGCGACTCTACCTCGTAA AGATCCCGGAGGTCTCGGCGGTAAGCCGAGGCCCCGTGAGGCTTTACTGG CTCTGCATGTGTGGTCGACTCTTGCTGGGACCCTGTATCTGTCGTCCACA TCCTTCACATTGAAATGAGTACCTTCCTTCCGCGCATCCCCCCCCCGTCC TGTGATGTGCTACTGTTGGGTTCAAACATGGCGGTGATACCCGGCCAAGG GTGTGTGTTCCTTCACTTGGCAGTTGCGCACTCATCTGGCTGCCGAGATG GGCGTTGCTTATGTTTTTTTTTTCCCGTCGGGGCCGTGGGGCGTTGTAAG GCTCAGGACGCTTTTACTGTGGGTCATGGTGCTGCACCGGTGTGCACCAC ACGCGTGCTCGGTGGATCTACTCTGATAGAATCGCCTAGCCGGTCTGCCG GAACGCACGTCGCACCCGACACGTGGATTTCATGGGTCGCGGCGGTGGGT CGCGCTGATTGCCCCGCTTCTCGTCGAGGCATCGCCATTGACGGGATTGA CGGGTGTTGGTCGGGGCACCGCCATCGACGTGCTTTCGTTTCGTCGCACA GATAACGGAAGAGAAGCTGAGAGCCATGCGCAACGGCTGTACCATCGAGG GAGTCCGCTACAACGGCATGTTCGTGAGGGTCGAGGGGGGCGGCGGCAAG GGGAGGGAGGGCCGCAATGCCTGGCTCACCATCGAGTGCACCGAAGGGAA AGTAAGTGTGCCCTGGCACTTCCATCTTTGAGGCGTGTGTTGTTCAGGCG TGCGTGCAAGCACAGACTCAACCTTCGCGGACCCCGTCCGCAAGAGTTTT CCGGTGGGGTGAGCTAGATGACCCCCCCGGGATATCTCCCCGTCGGGTGG GAAAATCCATGGTGTGCTAGCCTCAAAGTCCAGCCGTGCGCGAACCGATT AATCCGAGAGCGTTCATTTTCGGGCCGCGATGGCGGCCATGCTTTTATAT ATCGGCAGTGTGGGTTATGACTGAGCTGGTGAAGCCGAGGGTTCCGTCAT GAGTCCATGTTTGGTGCTTGCGGTTGCAGGCACATGTCGTAGAACATGAA TTTTGGGACTCGATTATGATGCGATGAACTTCAACGGCGCAGAGCAGGCG CATCGCAGCGACGTTGTTGTCCTATATTTTCTCGCCCAAGAAGGGATTCT GCCCTTACGACGCGCGCCGTCCGAGCCCGGTATTGGAACTCCAGGGTCTG CGGTCTCTCAGACCATTGGTTCACCGACCACTTGGCCGAAAGTGTCCCAA CGCCGGCTGGATGATGCGGCCATCGGTGTGCCAGCCATCATCTGCGCATT CCTCTTCTTAACTTGGTACGGCGTCCCCCCGCGCGCTCTCCCAACCTGAA CAAAACCCGAACCACGGAACAGAACCGGCAAATCCGCAAGATCTGCAAGT ACCTGCGCCTGACGGTCAACCGGCTGGCCAGGACGCGGTACGGCCCTTTC AGCCTCGGTAAGGTCCGGTCGGGTGGGGTCGCCCGCGTCGAAATTCCCAA GTCCTTCATGCGTCGGCTCGAGGAGGCGACCGCCGCGGGCTCGCCGGAGA TAGGCGGCGGCGGCGGCGGCGGCGGCGGCAACAGGCGAAGAGTTGGGCCG GGCCCGGGAACGGGAAGGCGAAGGGAGAGTGAGGCCGGTGCCGCGGTATC GATATCGCACAAGGACGGTGATGCTCCGACGGGGGGAGGGTGGGACAGTA GCAGCAGCAGGGGCACCGGCCGTGACGTCCGCAATGGTGGCGCGTACACT TCTAGAGGAGGGGGAGGTATCGCAAGGAGTGCGACCGGTGCGTGGGGCAA GAAAGCCATCAGAATACGGAAAGGTGTAGGGGCGCCCATGTCGAGAGGGG ATTATGCCGCGCGGTTGAAGGCGCAGCGGCGCGCGCGATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig12:1734389..1737979-

>mRNA_P-fluviatile_contig12.1443.1 ID=mRNA_P-fluviatile_contig12.1443.1|Name=mRNA_P-fluviatile_contig12.1443.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2682bp|location=Sequence derived from alignment at P-fluviatile_contig12:1734389..1737979- (Porterinema fluviatile SAG_2381)
GGAGCGGCAAGGGGCGTTGGTGATGTCCCGGGGACGGAGGAGAACGCCTT
CGAAGACAAGAATGACGACGACGATGACGACGACGACGACGAGGGCCAGG
GCGATAACATTCTCGACCAATCGGCAGTAGCGACTACCGACTGCGATACT
GATATGCTGGAGGCGCAGCAGATGAAGGACCCTTTCATGATGCGCCTGTC
CCGCCGCATCGCGAGGTCGGGCATCGCCTCCCGCCGCGAGGCCGAGCGCC
TGATCGAGGAAGGGGTGGTGACGGTCAACGGCGCGCCAGTGCAGACCCCG
GCCCGAAACGTCGGCCCTCGAGACATCGTTAAGGTCAAGGTGGGTAATTC
GCTGCGTCGAGTGGAGTTTGCGTCGTCGCTTAATACGGTTGGCGGAGCGG
CAAGGGGCGTTGGTGATGTCCCGGGGACGGAGGAGAACGCCTTCGAAGAC
AAGAATGACGACGACGATGACGACGACGACGACGAGGGCCAGGGCGATAA
CATTCTCGACCAATCGGCAGTAGCGACTACCGACTGCGATACTGATATGC
TGGAGGCGCAGCAGATGAAGGACCCTTTCATGATGCGCCTGTCCCGCCGC
ATCGCGAGGTCGGGCATCGCCTCCCGCCGCGAGGCCGAGCGCCTGATCGA
GGAAGGGGTGGTGACGGTCAACGGCGCGCCAGTGCAGACCCCGGCCCGAA
ACGTCGGCCCTCGAGACATCGTTAAGGTCAAGGTGGGTAATTCGCTGCGT
CGAGTGGAGTTTGCGTCGTCGCTTAATACGGTTGGCGGCAAGACGCTCGA
TAGTGTGGAGGATCACACGCCGAAGCTTTGGATGGTGCACAAGACGAGGA
ACGAGTTGGTCAGCAGGAATGACCCAAAGGGGCGACCGACCGTTTTCGAC
AGGCTGGCCAAGCTCAAGTTGCCGGACACGCTGATGCCCATCGGCAAGAC
GCTCGATAGTGTGGAGGATCACACGCCGAAGCTTTGGATGGTGCACAAGA
CGAGGAACGAGTTGGTCAGCAGGAATGACCCAAAGGGGCGACCGACCGTT
TTCGACAGGCTGGCCAAGCTCAAGTTGCCGGACACGCTGATGCCCATCGG
CCGGCTGGACTACAACACCGAGGGCCTCTTGCTGCTGACCAACGACGGGA
ACCTGGCCCGCAAGATGGAGCTGCCGATTAGCAATATCGTTAGGACCTAC
TCCGTCCGCGTGTACGGCAATGGCCGGCTGGACTACAACACCGAGGGCCT
CTTGCTGCTGACCAACGACGGGAACCTGGCCCGCAAGATGGAGCTGCCGA
TTAGCAATATCGTTAGGACCTACTCCGTCCGCGTGTACGGCAATATAACG
GAAGAGAAGCTGAGAGCCATGCGCAACGGCTGTACCATCGAGGGAGTCCG
CTACAACGGCATGTTCGTGAGGGTCGAGGGGGGCGGCGGCAAGGGGAGGG
AGGGCCGCAATGCCTGGCTCACCATCGAGTGCACCGAAGGGAAAATAACG
GAAGAGAAGCTGAGAGCCATGCGCAACGGCTGTACCATCGAGGGAGTCCG
CTACAACGGCATGTTCGTGAGGGTCGAGGGGGGCGGCGGCAAGGGGAGGG
AGGGCCGCAATGCCTGGCTCACCATCGAGTGCACCGAAGGGAAAAACCGG
CAAATCCGCAAGATCTGCAAGTACCTGCGCCTGACGGTCAACCGGCTGGC
CAGGACGCGGTACGGCCCTTTCAGCCTCGGTAAGGTCCGGTCGGGTGGGG
TCGCCCGCGTCGAAATTCCCAAGTCCTTCATGCGTCGGCTCGAGGAGGCG
ACCGCCGCGGGCTCGCCGGAGATAGGCGGCGGCGGCGGCGGCGGCGGCGG
CAACAGGCGAAGAGTTGGGCCGGGCCCGGGAACGGGAAGGCGAAGGGAGA
GTGAGGCCGGTGCCGCGGTATCGATATCGCACAAGGACGGTGATGCTCCG
ACGGGGGGAGGGTGGGACAGTAGCAGCAGCAGGGGCACCGGCCGTGACGT
CCGCAATGGTGGCGCGTACACTTCTAGAGGAGGGGGAGGTATCGCAAGGA
GTGCGACCGGTGCGTGGGGCAAGAAAGCCATCAGAATACGGAAAGGTGTA
GGGGCGCCCATGTCGAGAGGGGATTATGCCGCGCGGTTGAAGGCGCAGCG
GCGCGCGCGATGAAACCGGCAAATCCGCAAGATCTGCAAGTACCTGCGCC
TGACGGTCAACCGGCTGGCCAGGACGCGGTACGGCCCTTTCAGCCTCGGT
AAGGTCCGGTCGGGTGGGGTCGCCCGCGTCGAAATTCCCAAGTCCTTCAT
GCGTCGGCTCGAGGAGGCGACCGCCGCGGGCTCGCCGGAGATAGGCGGCG
GCGGCGGCGGCGGCGGCGGCAACAGGCGAAGAGTTGGGCCGGGCCCGGGA
ACGGGAAGGCGAAGGGAGAGTGAGGCCGGTGCCGCGGTATCGATATCGCA
CAAGGACGGTGATGCTCCGACGGGGGGAGGGTGGGACAGTAGCAGCAGCA
GGGGCACCGGCCGTGACGTCCGCAATGGTGGCGCGTACACTTCTAGAGGA
GGGGGAGGTATCGCAAGGAGTGCGACCGGTGCGTGGGGCAAGAAAGCCAT
CAGAATACGGAAAGGTGTAGGGGCGCCCATGTCGAGAGGGGATTATGCCG
CGCGGTTGAAGGCGCAGCGGCGCGCGCGATGA
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