mRNA_P-fluviatile_contig11.1241.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1241.1
Unique NamemRNA_P-fluviatile_contig11.1241.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Match: A0A835YJ53_9STRA (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ53_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.210e-37
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:  127 WEKCLAASEEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAHRVQALLPKDTTVNLATQGCMPFTALIKGGVTVASISGCDAPAILRQVNKHMP 456
            W K LA+S+EKL+VID HQ+WCG CETLQPT  RI+L+TTDC NRC F  A++ K   +V  LL  D    L  +GCMPF AL+KGG  VA++SG DAP +L  V  H P
Sbjct:    1 WSKVLASSKEKLIVIDIHQDWCGPCETLQPTMHRIALDTTDCANRCGFFSASMGKLKAQVGELLSADARAALEKRGCMPFFALVKGGAVVATVSGADAPLLLSLVKAHTP 110
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BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Match: A0A7S2CQY2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQY2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.960e-34
Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = 1 
Query:   88 SLVRTITEEGEFSWEKCLAASEEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAHRVQALLPKDTTVNLATQGCMPFTALIKGGVTVASISGCDAPAILRQVNKHMPPLRTGDDKA 483
            +LV+ I  E E +W++ +  S + LLV+DCHQ+WCG+CETLQPTFLRI ++  + E+R  FL AN+  F  +++A+LP+D+ ++L   GCMPF  LI+    VA++ G ++P+IL  V  ++P    GD +A
Sbjct:    7 NLVKVI--ETEEAWDEWMGKSGDMLLVLDCHQDWCGQCETLQPTFLRIFMDNDEPESRLAFLSANIKVFKDKIKAILPEDSQISLDEHGCMPFFLLIRSNAVVANVIGANSPSILMNVQGNIPAKPEGDVEA 136
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BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Match: A0A4Q6B0Z1_9SPHI (Thioredoxin domain-containing protein n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q6B0Z1_9SPHI)

HSP 1 Score: 88.2 bits (217), Expect = 8.160e-19
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:  112 EGEFSWEKCLAASEEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAHRVQALLPKDTTVNLATQGCMPFTALIK 381
            E E  WE  +  SE KL+VIDCHQEWCG CE + P+  R+ L+  + + R ++  A++ K   ++QA LP+D  ++L   GC+P  A+ +
Sbjct:   83 EDEQQWESVVEQSESKLVVIDCHQEWCGNCEAILPSMTRVLLDYDNIDERFVYATASIGKVGAQIQAALPQDAHISLEKNGCLPLFAVFR 172
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BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Match: A0A8J2SPW4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPW4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.960e-16
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:  139 LAASEEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAHR-VQALLPKDTTVNLATQGCMPFTALIKGGVTVASISGCDAPAILRQVNKHMP 456
            L  SE  L+V+D HQ WCG C+T++PT+  I  E  +CE++  F  A++     + V+ +  K + ++LA  GCMPF  L+K    VA + G D P +   V  + P
Sbjct:   19 LEKSETVLVVMDVHQNWCGPCDTMKPTYNSIFNEIDNCEDKVAFTTADIKTLTPQLVELMATKPSDLDLANHGCMPFFLLVKNKAVVAIVLGADVPTLRDNVVLYAP 125
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BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Match: A0A0G4I1W7_9ALVE (Thioredoxin domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I1W7_9ALVE)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-8
Identity = 34/109 (31.19%), Postives = 52/109 (47.71%), Query Frame = 1 
Query:  148 SEEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAHRVQALLPKDTTVNLATQGCMPFTALIKGGVTVASISGCDAPAILRQVNKHMPPLRTGD 474
            S+ +L V+D H  WCG C+ + PT+  + L   + ++R   +  + +K A          T        C  F    KGG  V ++ G +APAILR +  H+PPL   D
Sbjct:   24 SDPRLHVVDVHATWCGPCKQMIPTWKSLQLNYDNFDDRINLVICDAEKIA----------TFEKYKGTACPRFI-FYKGGKEVENVEGANAPAILRAIEHHVPPLEQED 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YJ53_9STRA1.210e-3756.36Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S2CQY2_9STRA2.960e-3443.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4Q6B0Z1_9SPHI8.160e-1940.00Thioredoxin domain-containing protein n=1 Tax=Sphi... [more]
A0A8J2SPW4_9STRA2.960e-1636.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0G4I1W7_9ALVE1.170e-831.19Thioredoxin domain-containing protein n=1 Tax=Chro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:2864244..2867371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue7.6e-11
Seed eggNOG ortholog67593.Physo156235
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size495
Cds size495
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1241.1prot_P-fluviatile_contig11.1241.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 2864244..2867371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815472.7044876-CDS-P-fluviatile_contig11:2864243..28644091622815472.7044876-CDS-P-fluviatile_contig11:2864243..2864409Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2864244..2864409 +
1693561962.006446-CDS-P-fluviatile_contig11:2864243..28644091693561962.006446-CDS-P-fluviatile_contig11:2864243..2864409Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2864244..2864409 +
1622815472.7174842-CDS-P-fluviatile_contig11:2865110..28652201622815472.7174842-CDS-P-fluviatile_contig11:2865110..2865220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2865111..2865220 +
1693561962.0188782-CDS-P-fluviatile_contig11:2865110..28652201693561962.0188782-CDS-P-fluviatile_contig11:2865110..2865220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2865111..2865220 +
1622815472.727196-CDS-P-fluviatile_contig11:2866334..28664391622815472.727196-CDS-P-fluviatile_contig11:2866334..2866439Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2866335..2866439 +
1693561962.0285008-CDS-P-fluviatile_contig11:2866334..28664391693561962.0285008-CDS-P-fluviatile_contig11:2866334..2866439Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2866335..2866439 +
1622815472.7367737-CDS-P-fluviatile_contig11:2867257..28673711622815472.7367737-CDS-P-fluviatile_contig11:2867257..2867371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2867258..2867371 +
1693561962.0377457-CDS-P-fluviatile_contig11:2867257..28673711693561962.0377457-CDS-P-fluviatile_contig11:2867257..2867371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 2867258..2867371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1241.1

>prot_P-fluviatile_contig11.1241.1 ID=prot_P-fluviatile_contig11.1241.1|Name=mRNA_P-fluviatile_contig11.1241.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=165bp
ATASLACFQLRHLTKRCPILDAMAPGVGDSLVRTITEEGEFSWEKCLAAS
EEKLLVIDCHQEWCGRCETLQPTFLRISLETTDCENRCLFLEANLDKFAH
RVQALLPKDTTVNLATQGCMPFTALIKGGVTVASISGCDAPAILRQVNKH
MPPLRTGDDKAEPE*
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mRNA from alignment at P-fluviatile_contig11:2864244..2867371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1241.1 ID=mRNA_P-fluviatile_contig11.1241.1|Name=mRNA_P-fluviatile_contig11.1241.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3128bp|location=Sequence derived from alignment at P-fluviatile_contig11:2864244..2867371+ (Porterinema fluviatile SAG_2381)
GCCACGGCCTCTCTCGCGTGCTTCCAACTACGACATTTGACAAAAAGGTG
CCCAATCCTCGACGCTATGGCACCAGGAGTGGGGGACTCTCTTGTGCGTA
CAATCACGGAGGAAGGAGAATTTTCATGGGAAAAATGCCTCGCCGCGAGC
GAGGAAAAGCTTTTGGGTGAGTAGACTTAACTCCCAGCGAGAAAGGCGAC
AAGGGTACTCATAAATCACCTGCCAATCTGCAAGAGGATGATGGGCCGCA
GAGATTAAACCACGTTGATACATGATCATTTGTGTCAGCCCCGCTTTGCA
AACGAACGCACATCGTGGGAAACTTGACCCTCGCTTTCCCATCTTATGAT
GCAAACGTACGACAAGGATGATGAGGCAAGCGGGCGCAAAAACTCCTTTT
CTGCAGCGGCCTTACGCGAAACTGATTGTGTACGGCCTACGTTCTGCACT
GCCGAGCCGTCTCGCGTACAATAAGTTGACGTGCAGAAAACTTGAACTTG
AGTTAGGGTTATTGACGCACGAAGCACACCCGTGGTCTCCGTGGCCTGAA
CATCTGCCTCGAGTCAGTCATCGCGGTCGTATTCATTCGAATGATTCTCC
GGCTCTTCACTTAGTGGAAATGTCTAGACTAATCATTTGAATAATTCTCC
GGCTATTCCCTTCGTGGAAATATCTCATCGCATGGTCTACGCACCCCCCG
CATGTCTTGTACTGTTTGCATTTCTCGCTTCGCGGACGGAATGGATAGAT
TTTCTCTAGGAGTACAATCTCTCGAACGCCTGCTTCTCCGGAGCTCCCTC
ACCTCAGTTGTCGACCGACTTTTTAAACATATGTTATAACCAATCGCATG
CAATGCAACGCCGTCAGTGATAGACTGCCACCAAGAATGGTGCGGGAGAT
GCGAGACCTTACAGCCGACGTTCCTGAGGATATCTCTCGAAACCACAGAC
TGCGAGAATCGCTGCCTCTTTCTCGAGGTGAGGGAGCACACCCAAAAAGT
GGGAACAGATGATACGTCGTACCGAATCCCGATGCTTTCGTTCGCCGGAG
TGTCGTGGTTTCTAGGCGCGGGGCTGCCCAAGCTTATACTATTTATAGAG
AGTGGTTGGTGCTATCAAATGAGCAATAACGGAAGAAAACGCAAACACTT
GCCCCCAGAAAAATTCCCCTCTGCCTACCAGTCTCACTGAACACATACGC
TGGTGGCGAGGGGGCGCTTGGAGTCCACCGGAAAAGCGGTCTGCCCTGCA
GCAAGGGGCAATCTTGCGATTGGATGTTGTACCAACCGAGTCGAGACGCA
CAGAATTGTCTTGTTTGGTGTCATTTACACTTCCACAAGGGGTAGAACAA
TGATGACGGCTCAATCAAGTGGATGATTGCTCGCGGATGGTTTGTGGGTC
AGAAGTCGTTGACATGCGGTTGCAGGCGGGAACAGATGAAACAAACTCTG
CTGGCGCCCCCCCTCTAGAGTTTGCGTTGGAAAATATGTTGCCATCCCAC
CTTCTTTAAGTCGAGATACCTCTCACGCACTTTAGTCTCTATGAACGAAG
GATCATTCGAGCAGAACACCACAAGAGTTTCACGCAAAGTTCTGTACTCA
TGTGCCAGTCCTGTTAGTTAGAAGGAACTACCCACTAGACTACTCAGTCA
GCGCTGACTGAGTAGATTAGTGGGTAGTTCCTTCTAACCAACAAAAGAAG
TACTTTTGAGCTCGATGTCTCTCATTCTCGGTGCTTTTCTAGAACCGAAG
ACTCTGGACAGAGTTTTCGGCCTTCTGGTTTACCCTGCAGATGGCCGGGA
ACCGCCCGGGGACGCGATTTTCTCCATTTCTTGCAAACGAAAATCGCAGC
TTGAACGGAATTTTCGGAAATTTCTATTTCAGTGCTGTCCACCTTCACCT
ATGCACTGCAACAAGTCTCGATGAACACGCCGGGCCCGACTTTCATGAGT
TATCGGGTGAGCTGCCATCAAATGCATGTGTTCGTGCACCAAAAAACACA
CCCATTACAGTATCCCCCTTGACCCTCTTGCATTGGGCTACACGTACAAA
AACTCGTTGGGACAACATTCTCATGATGCCGCGCTGGAAAGGCCAATCTG
GACAAGTTCGCGCACCGCGTTCAAGCTCTCCTACCGAAGGACACCACAGT
CAATCTTGCCACCCAAGGCTGCATGCCGTTTACGGCCCTCATAAAGGTGA
GGGCGCAACAGGGCTTAGAAAAGTTTTTCAACTTTTGCGGGCATGAATGC
GCACCTGTTGTACTCGGTCCACCAAAATCTGCACAGAAGGTGATTCGAGG
TATTGTTAGGTACAACATCGCGTCACCTTGTCCGATCCGTATTTGCGCCA
CTGATTGGGACGTTCTTCAATGATGTGTTATTTGTTTGCTTGCTGCAAAG
GCGGAAGCGGGAGGGGACAGGGTGTGGAGGAAATTGGCGCGGAAAGCGAA
CAGAGAAAAGACTGACCCCAAATTCGAGGAAGCACGCGCGGGGTGGCAAA
TGCTTGTGCGTACACTCGCGGCATCCTTGAGCGTCTTGAGTGGCCAAAGT
GTCGATTGCCTTTTCAAAACGCAAACGGTGCAATGTCAGCAACATTATGC
ACTAGTTTAAAAACAGCCTCGTTTTTCTGAAATGTGTTTTTGTGCATGCG
CTACGCTCCCGGTTGATCTTATTCAAACTGTTAGCTGTACACTAAGTACG
CAGCACCTGCACATACTTCGCTCGTTGAATATCGGGAAACATATATGCTT
TCACGTATTGTTCAACATCGGTTCAGTACCTCTTTTACAGCCGTTCAAAG
GGGGTGGTTCAACTGCGTTTCGGATCCCAAAATCTCATAGCCTTTTCCAA
CGAGTCAGTCGAGGTGTTCCTGTGAGGTTGCTCGACATCTTCAAGCCCGA
TTTTCCTGCCCGTACTGCATGTTCTCTCCCGCCTTCGACAAAGAAAAGAT
ATGGCCAATGCCTCAGCGCTGCCCATTGTGTTACACGGCATGTGTTGAAC
CGCAACAAACCCAGGGGGGAGTCACGGTGGCGAGCATCAGCGGATGCGAC
GCGCCCGCCATCCTTCGACAAGTGAATAAGCACATGCCTCCACTACGCAC
GGGAGATGATAAAGCAGAACCTGAATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:2864244..2867371+

>mRNA_P-fluviatile_contig11.1241.1 ID=mRNA_P-fluviatile_contig11.1241.1|Name=mRNA_P-fluviatile_contig11.1241.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=990bp|location=Sequence derived from alignment at P-fluviatile_contig11:2864244..2867371+ (Porterinema fluviatile SAG_2381)
GCCACGGCCTCTCTCGCGTGCTTCCAACTACGACATTTGACAAAAAGGTG
CCCAATCCTCGACGCTATGGCACCAGGAGTGGGGGACTCTCTTGTGCGTA
CAATCACGGAGGAAGGAGAATTTTCATGGGAAAAATGCCTCGCCGCGAGC
GAGGAAAAGCTTTTGGGCCACGGCCTCTCTCGCGTGCTTCCAACTACGAC
ATTTGACAAAAAGGTGCCCAATCCTCGACGCTATGGCACCAGGAGTGGGG
GACTCTCTTGTGCGTACAATCACGGAGGAAGGAGAATTTTCATGGGAAAA
ATGCCTCGCCGCGAGCGAGGAAAAGCTTTTGGTGATAGACTGCCACCAAG
AATGGTGCGGGAGATGCGAGACCTTACAGCCGACGTTCCTGAGGATATCT
CTCGAAACCACAGACTGCGAGAATCGCTGCCTCTTTCTCGAGTGATAGAC
TGCCACCAAGAATGGTGCGGGAGATGCGAGACCTTACAGCCGACGTTCCT
GAGGATATCTCTCGAAACCACAGACTGCGAGAATCGCTGCCTCTTTCTCG
AGGCCAATCTGGACAAGTTCGCGCACCGCGTTCAAGCTCTCCTACCGAAG
GACACCACAGTCAATCTTGCCACCCAAGGCTGCATGCCGTTTACGGCCCT
CATAAAGGCCAATCTGGACAAGTTCGCGCACCGCGTTCAAGCTCTCCTAC
CGAAGGACACCACAGTCAATCTTGCCACCCAAGGCTGCATGCCGTTTACG
GCCCTCATAAAGGGGGGAGTCACGGTGGCGAGCATCAGCGGATGCGACGC
GCCCGCCATCCTTCGACAAGTGAATAAGCACATGCCTCCACTACGCACGG
GAGATGATAAAGCAGAACCTGAATGAGGGGGAGTCACGGTGGCGAGCATC
AGCGGATGCGACGCGCCCGCCATCCTTCGACAAGTGAATAAGCACATGCC
TCCACTACGCACGGGAGATGATAAAGCAGAACCTGAATGA
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