mRNA_P-fluviatile_contig11.1222.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig11.1222.1
Unique Name	mRNA_P-fluviatile_contig11.1222.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig11.1222.1 vs. uniprot
Match: D8LKE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-18
Identity = 78/192 (40.62%), Postives = 102/192 (53.12%), Query Frame = 2

Query:  494 RGRSRRRPLSWHCRQDAA-----RPCPPASAYSAPFGPLSPAPSNTITENDSSSY-STARRRSSGESSALAYGGHKISSSSYDACAA---ATPAAVATPAGLEKSWQN-------GRGRRR------TGKTRGDGATRGETRGESIDAKELFRRKNKMATWNLTYGRWVESYDRSMARRASIERREHIETQR 1003
            RGR+RRR LSWHCR+        R  PPA+  +       P+PS   + N+++     + R + G  S             Y  C +   +T    +  +G E + +         RGRRR       GK RG G   G   GESIDA+ELFRRKNKMA +N+TYGRW ESYDR+MARRAS+ERRE +E +R
Sbjct:  190 RGRTRRRSLSWHCREKLGGDLQQRQQPPATTPTYSSSAFCPSPSAFSSYNNANMLIDNSSRINDGSCSCCT-----TPRQQYFCCESMLRSTNCGSSVSSGNEAAGEREGGTRREARGRRRGRSAGEPGKERGSG---GAGCGESIDAEELFRRKNKMACFNVTYGRWAESYDRAMARRASLERRERLEIER 373

[Close]

BLAST of mRNA_P-fluviatile_contig11.1222.1 vs. uniprot
Match: A0A6H5JDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDG8_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.280e-15
Identity = 77/194 (39.69%), Postives = 102/194 (52.58%), Query Frame = 2

Query:  494 RGRSRRRPLSWHCRQD------------AARP-------CPPASAYSAPFGPLSPAPSNT--ITENDSSSYSTARRRSSGESSALAYGGHKISSSSYDACAAATPAAVATPAGLEKSWQNGRGRRRT---GKTRGDGATRGETRGESIDAKELFRRKNKMATWNLTYGRWVESYDRSMARRASIERREHIETQR 1003
            RGR+R R LSWHCRQ             A  P       CP  SA+S+ +   +    N+  I + + S  +T R++     S L       S+S   + ++   +A     G  +  +  RGR      GK RG G   G    ESIDA+ELFRRKNKMA++N+TYGRW ESYDR MARRAS+ERRE +E +R
Sbjct:   83 RGRTRERSLSWHCRQKLGGDLQQXXXXXATTPTYSSSAFCPSPSAFSS-YNNTNMLIDNSGRINDGNCSCCTTPRQQYFCCESMLR------STSCGSSISSGNESAGEREGGTSREARGRRGRSAGEPGGKERGSG---GAGCRESIDAEELFRRKNKMASFNVTYGRWAESYDRGMARRASLERRERLEIER 266

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig11.1222.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig11.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LKE5_ECTSI	3.620e-18	40.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JDG8_9PHAE	3.280e-15	39.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig11	contig	P-fluviatile_contig11:2681891..2683776 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1007
Cds size	918
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig11.1222.1	prot_P-fluviatile_contig11.1222.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig11 2681891..2683688 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815470.2182875-CDS-P-fluviatile_contig11:2681890..2681998	1622815470.2182875-CDS-P-fluviatile_contig11:2681890..2681998	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2681891..2681998 -
1693561931.3299184-CDS-P-fluviatile_contig11:2681890..2681998	1693561931.3299184-CDS-P-fluviatile_contig11:2681890..2681998	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2681891..2681998 -
1622815470.232581-CDS-P-fluviatile_contig11:2682261..2682964	1622815470.232581-CDS-P-fluviatile_contig11:2682261..2682964	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2682262..2682964 -
1693561931.3418603-CDS-P-fluviatile_contig11:2682261..2682964	1693561931.3418603-CDS-P-fluviatile_contig11:2682261..2682964	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2682262..2682964 -
1622815470.2445307-CDS-P-fluviatile_contig11:2683581..2683688	1622815470.2445307-CDS-P-fluviatile_contig11:2683581..2683688	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2683582..2683688 -
1693561931.3509119-CDS-P-fluviatile_contig11:2683581..2683688	1693561931.3509119-CDS-P-fluviatile_contig11:2683581..2683688	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig11 2683582..2683688 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815470.2590683-UTR-P-fluviatile_contig11:2683688..2683776	1622815470.2590683-UTR-P-fluviatile_contig11:2683688..2683776	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig11 2683689..2683776 -
1693561931.3599606-UTR-P-fluviatile_contig11:2683688..2683776	1693561931.3599606-UTR-P-fluviatile_contig11:2683688..2683776	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig11 2683689..2683776 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig11:2681891..2683776-
coding sequence from alignment at P-fluviatile_contig11:2681891..2683776-

protein sequence of mRNA_P-fluviatile_contig11.1222.1

>prot_P-fluviatile_contig11.1222.1 ID=prot_P-fluviatile_contig11.1222.1|Name=mRNA_P-fluviatile_contig11.1222.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp
MPTRDYDPRRYGPTTNTRVSAISLGLHPATAVLSKSHREARTATRASRGR
ATRATRMALPAQEKRRVDAKQPPPLLSSVNTASTETPTTSFESTTAMADT
TGSDSFYDVGDEGDDDDDDDDDDDDDDDCAGSPGRRGRSRRRPLSWHCRQ
DAARPCPPASAYSAPFGPLSPAPSNTITENDSSSYSTARRRSSGESSALA
YGGHKISSSSYDACAAATPAAVATPAGLEKSWQNGRGRRRTGKTRGDGAT
RGETRGESIDAKELFRRKNKMATWNLTYGRWVESYDRSMARRASIERREH
IETQRR

mRNA from alignment at P-fluviatile_contig11:2681891..2683776-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig11.1222.1 ID=mRNA_P-fluviatile_contig11.1222.1|Name=mRNA_P-fluviatile_contig11.1222.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1886bp|location=Sequence derived from alignment at P-fluviatile_contig11:2681891..2683776- (Porterinema fluviatile SAG_2381)
ATCTTCCTTTCCCTTCTTCTTTCTATGTCGCGGCCCACGCCATTTTTAAA
TGTGCAACGGTCGGTCACCGCGATAGCAGCGCGAAGTCATGCCAACAAGA
GACTACGATCCCCGACGATACGGCCCGACCACAAACACGAGGGTTTCTGC
GATCTCCCTCGGCCTGCATCCGGCGACAGCAGTCTTGTCGAAAAGGCGAG
ACTTTTGGGGTTCCCGCGCCAAGCGTGTCGGAGTGGGCGTCCGTGTCGTC
GGATCGTAGTTGAAAGACCAACGAGTCGGGTACTGCTGTGAGGAGGCCGG
ACCGCTTGAGCTTATCGCGTTTCCTATCGGTGTTGGTGGCAGGTGCACGT
GAAAGATGAATCTACTCTTCAAGAGTGAGGGTCGAAGAGATAATGTGTGA
CAACAGAGCAGTTACACCACGTTCGCCGCCGCCCCGCCGCCGCATTTGCC
GACGAGTAGAGAGAGAACGATCAGAGCATCAACGAGCAAATCAGGCATTA
CACACGACAAAAAAGCAATTGCGGGATGTTGATCCTGGAAATGGCGACAT
GAGAGCTCGCAACTTCGAGAGATTCGGGGTGAAATTTCGCCCCCCCCTCG
CTTTGTTCCTCTCTCGCACTTCGTGACTTCCCGACTCGCCCACAGTAGTT
CTGTTGCCCTTTTGCATTTGAAAGCTCGGCGATAAGGTACTTTCTAGATG
GAGGTGAGCTTATACTCGAGTACCCAGAGTCCCTACGAGCCTTCCACTCT
GCTTTACTTCCGTCGAATCCCTGGTGACGTCTATCCGCGCAACACGTGGT
TTGTGCTTGCAGCCATCGAGAAGCCCGGACAGCAACCCGCGCATCACGCG
GACGAGCTACAAGAGCAACAAGAATGGCCCTTCCAGCACAAGAAAAGCGC
AGAGTCGACGCCAAGCAACCACCACCTCTGCTGTCTAGCGTGAACACGGC
GTCCACTGAGACCCCGACGACCTCCTTCGAGTCGACCACGGCCATGGCTG
ATACGACGGGAAGCGACAGTTTTTATGATGTAGGTGATGAGGGTGATGAT
GATGATGACGATGATGATGACGATGATGACGATGATGACTGTGCGGGCAG
CCCAGGGAGGAGAGGCCGATCTCGAAGGAGACCTCTCAGCTGGCACTGCC
GCCAGGACGCAGCACGCCCATGCCCCCCGGCTTCGGCGTACTCTGCTCCT
TTCGGCCCGTTATCTCCTGCCCCTAGCAACACCATCACCGAAAATGACAG
CAGCAGTTACTCCACGGCACGGCGGCGATCCTCGGGCGAGTCGAGTGCCC
TGGCTTATGGTGGTCATAAGATCAGCAGCAGTAGCTACGATGCGTGCGCG
GCAGCAACACCAGCAGCAGTAGCGACGCCGGCGGGGCTAGAGAAATCGTG
GCAGAATGGACGGGGGCGGAGGCGGACAGGTAAGACGCGGGGGGACGGCG
CGACACGGGGCGAGACGCGCGGCGAGAGCATCGACGCCAAGGAACTTTTT
CGTCGGAAGAATAAGGTGCGATTGTGACTCGTTTATTTCTGTTTATGGTG
CAGTCGTGGTCGATGTCGCGCGACGTCATCCACGTTGTCGCCATTGCTGA
AGATGGTGGCGGTCTTGATTTTGTTGCTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGGTGCTGGTGCTGCTGGTGCTACCGCGGTCTCTTCTGTGTTCAAA
AACAAGCCGCGACAGTGCAACTTGCCCCGACGTTCATTCCCCCCTCGGTG
GCACGCGCACGCTTCGAACCCCGTGCAGATGGCGACTTGGAACCTGACGT
ATGGGAGATGGGTCGAGAGCTACGACCGGAGCATGGCCAGGCGCGCGTCG
ATTGAGCGGAGAGAGCACATCGAGACGCAGCGGCGG

Coding sequence (CDS) from alignment at P-fluviatile_contig11:2681891..2683776-

>mRNA_P-fluviatile_contig11.1222.1 ID=mRNA_P-fluviatile_contig11.1222.1|Name=mRNA_P-fluviatile_contig11.1222.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig11:2681891..2683776- (Porterinema fluviatile SAG_2381)
ATGCCAACAAGAGACTACGATCCCCGACGATACGGCCCGACCACAAACAC
GAGGGTTTCTGCGATCTCCCTCGGCCTGCATCCGGCGACAGCAGTCTTGT
CGAAAAGATGCCAACAAGAGACTACGATCCCCGACGATACGGCCCGACCA
CAAACACGAGGGTTTCTGCGATCTCCCTCGGCCTGCATCCGGCGACAGCA
GTCTTGTCGAAAAGCCATCGAGAAGCCCGGACAGCAACCCGCGCATCACG
CGGACGAGCTACAAGAGCAACAAGAATGGCCCTTCCAGCACAAGAAAAGC
GCAGAGTCGACGCCAAGCAACCACCACCTCTGCTGTCTAGCGTGAACACG
GCGTCCACTGAGACCCCGACGACCTCCTTCGAGTCGACCACGGCCATGGC
TGATACGACGGGAAGCGACAGTTTTTATGATGTAGGTGATGAGGGTGATG
ATGATGATGACGATGATGATGACGATGATGACGATGATGACTGTGCGGGC
AGCCCAGGGAGGAGAGGCCGATCTCGAAGGAGACCTCTCAGCTGGCACTG
CCGCCAGGACGCAGCACGCCCATGCCCCCCGGCTTCGGCGTACTCTGCTC
CTTTCGGCCCGTTATCTCCTGCCCCTAGCAACACCATCACCGAAAATGAC
AGCAGCAGTTACTCCACGGCACGGCGGCGATCCTCGGGCGAGTCGAGTGC
CCTGGCTTATGGTGGTCATAAGATCAGCAGCAGTAGCTACGATGCGTGCG
CGGCAGCAACACCAGCAGCAGTAGCGACGCCGGCGGGGCTAGAGAAATCG
TGGCAGAATGGACGGGGGCGGAGGCGGACAGGTAAGACGCGGGGGGACGG
CGCGACACGGGGCGAGACGCGCGGCGAGAGCATCGACGCCAAGGAACTTT
TTCGTCGGAAGAATAAGCCATCGAGAAGCCCGGACAGCAACCCGCGCATC
ACGCGGACGAGCTACAAGAGCAACAAGAATGGCCCTTCCAGCACAAGAAA
AGCGCAGAGTCGACGCCAAGCAACCACCACCTCTGCTGTCTAGCGTGAAC
ACGGCGTCCACTGAGACCCCGACGACCTCCTTCGAGTCGACCACGGCCAT
GGCTGATACGACGGGAAGCGACAGTTTTTATGATGTAGGTGATGAGGGTG
ATGATGATGATGACGATGATGATGACGATGATGACGATGATGACTGTGCG
GGCAGCCCAGGGAGGAGAGGCCGATCTCGAAGGAGACCTCTCAGCTGGCA
CTGCCGCCAGGACGCAGCACGCCCATGCCCCCCGGCTTCGGCGTACTCTG
CTCCTTTCGGCCCGTTATCTCCTGCCCCTAGCAACACCATCACCGAAAAT
GACAGCAGCAGTTACTCCACGGCACGGCGGCGATCCTCGGGCGAGTCGAG
TGCCCTGGCTTATGGTGGTCATAAGATCAGCAGCAGTAGCTACGATGCGT
GCGCGGCAGCAACACCAGCAGCAGTAGCGACGCCGGCGGGGCTAGAGAAA
TCGTGGCAGAATGGACGGGGGCGGAGGCGGACAGGTAAGACGCGGGGGGA
CGGCGCGACACGGGGCGAGACGCGCGGCGAGAGCATCGACGCCAAGGAAC
TTTTTCGTCGGAAGAATAAGATGGCGACTTGGAACCTGACGTATGGGAGA
TGGGTCGAGAGCTACGACCGGAGCATGGCCAGGCGCGCGTCGATTGAGCG
GAGAGAGCACATCGAGACGCAGCGGCGGATGGCGACTTGGAACCTGACGT
ATGGGAGATGGGTCGAGAGCTACGACCGGAGCATGGCCAGGCGCGCGTCG
ATTGAGCGGAGAGAGCACATCGAGACGCAGCGGCGG