mRNA_P-fluviatile_contig11.1089.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig11.1089.1
Unique NamemRNA_P-fluviatile_contig11.1089.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig11.1089.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.440e-58
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 1 
Query: 1006 VSSDHIVAEETKTLSEPARRWAKLRKNFRLAALRSIAQDKREALQKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISDLVELQ 1341
            +S+   VA+ET+ LSEPARRW KLR+NFRLAALRSIAQDKREAL+KLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDI+DLVELQ
Sbjct:   50 ISTTDAVAKETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig11.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXX5_ECTSI2.440e-5889.29RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig11contigP-fluviatile_contig11:1209427..1213686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2.7e-50
Seed eggNOG ortholog2880.D7FXX5
EggNOG free text desc.Plus-3 domain
EggNOG OGs2A73H@1,2RYD8@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-16_005200.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size2060
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig11.1089.1prot_P-fluviatile_contig11.1089.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig11 1210771..1212970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.6426609-UTR-P-fluviatile_contig11:1209426..12098471622815449.6426609-UTR-P-fluviatile_contig11:1209426..1209847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1209427..1209847 +
1693561907.8394742-UTR-P-fluviatile_contig11:1209426..12098471693561907.8394742-UTR-P-fluviatile_contig11:1209426..1209847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1209427..1209847 +
1622815449.6545901-UTR-P-fluviatile_contig11:1210315..12107701622815449.6545901-UTR-P-fluviatile_contig11:1210315..1210770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1210316..1210770 +
1693561907.8513095-UTR-P-fluviatile_contig11:1210315..12107701693561907.8513095-UTR-P-fluviatile_contig11:1210315..1210770Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1210316..1210770 +
1622815449.7168386-UTR-P-fluviatile_contig11:1212970..12136861622815449.7168386-UTR-P-fluviatile_contig11:1212970..1213686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1212971..1213686 +
1693561908.911334-UTR-P-fluviatile_contig11:1212970..12136861693561908.911334-UTR-P-fluviatile_contig11:1212970..1213686Porterinema fluviatile SAG_2381UTRP-fluviatile_contig11 1212971..1213686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815449.6666472-CDS-P-fluviatile_contig11:1210770..12109891622815449.6666472-CDS-P-fluviatile_contig11:1210770..1210989Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1210771..1210989 +
1693561907.8616455-CDS-P-fluviatile_contig11:1210770..12109891693561907.8616455-CDS-P-fluviatile_contig11:1210770..1210989Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1210771..1210989 +
1622815449.6767194-CDS-P-fluviatile_contig11:1211299..12113561622815449.6767194-CDS-P-fluviatile_contig11:1211299..1211356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1211300..1211356 +
1693561907.8698013-CDS-P-fluviatile_contig11:1211299..12113561693561907.8698013-CDS-P-fluviatile_contig11:1211299..1211356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1211300..1211356 +
1622815449.6880677-CDS-P-fluviatile_contig11:1211687..12117581622815449.6880677-CDS-P-fluviatile_contig11:1211687..1211758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1211688..1211758 +
1693561907.8783734-CDS-P-fluviatile_contig11:1211687..12117581693561907.8783734-CDS-P-fluviatile_contig11:1211687..1211758Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1211688..1211758 +
1622815449.6976979-CDS-P-fluviatile_contig11:1212409..12125001622815449.6976979-CDS-P-fluviatile_contig11:1212409..1212500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1212410..1212500 +
1693561908.8827894-CDS-P-fluviatile_contig11:1212409..12125001693561908.8827894-CDS-P-fluviatile_contig11:1212409..1212500Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1212410..1212500 +
1622815449.7073958-CDS-P-fluviatile_contig11:1212940..12129701622815449.7073958-CDS-P-fluviatile_contig11:1212940..1212970Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1212941..1212970 +
1693561908.8997836-CDS-P-fluviatile_contig11:1212940..12129701693561908.8997836-CDS-P-fluviatile_contig11:1212940..1212970Porterinema fluviatile SAG_2381CDSP-fluviatile_contig11 1212941..1212970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig11.1089.1

>prot_P-fluviatile_contig11.1089.1 ID=prot_P-fluviatile_contig11.1089.1|Name=mRNA_P-fluviatile_contig11.1089.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MSPEPSSPHGTQGLHERNGIFLSNSIAVFPTNFACGLCAVSSTVSSDHIV
AEETKTLSEPARRWAKLRKNFRLAALRSIAQDKREALQKLQEVRKRADKA
QEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDISD
LVELQ*
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mRNA from alignment at P-fluviatile_contig11:1209427..1213686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig11.1089.1 ID=mRNA_P-fluviatile_contig11.1089.1|Name=mRNA_P-fluviatile_contig11.1089.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4260bp|location=Sequence derived from alignment at P-fluviatile_contig11:1209427..1213686+ (Porterinema fluviatile SAG_2381)
CCGGAATGCATGATGGTCAGCTTCATAAGTACGCGGGCCTGGCGTTAAGG
TCAATTACGCAATTCTAGACACAAAGCAAAAAAATGTGTGCGTGTGCATC
GGCCCGCTGCCCTCCTCTCTGCGACCCACTAAAGTGCAGCGCACTGTCGA
CACCAGTCCCTCCACGTCTCATACCACCTACCCCGTCGCACAACCTCGTT
CACTAGTTTCGGAAACCATTCATGTGTTCGTGTGCCTGGAAGGCGGTTCA
ATCCGAAACTTGACGCCACAGGAAACGGGCCTGCAACGTGCGGAGGATTT
CAAGAAGTGCAAACGAACGGGGCACAAGCCGAGGGCTTCAAGGACGGTCT
TCGAGGAGGATTCGCGCAGCGCGGCATTGATCATATGGCGGAAACCACCC
CTCCAGCATCTTTAAGCGCAGGTATTCATGGCTGCTGGTCGACAGCTTTC
CCGATAAAGTGCTCTCAAAGACTTTTTTGAAAACATGTTCAACGCGAGCT
TTTCCAAGCCCATCAGGGTCACTGGCGAGGAACACCAGCCCAAGGTCTTG
CGATGGCCGCCGGAGAGAATAGTGTACCATGTCAGCCTTGTGGAAGCTTC
CCAACGCGTAATGTGACCTCGAAATTATCTCGTTCATGAGATTGACATCA
GCGCGCAGAGTTGGTTTTGATGCTCCCCTTGCCGTCGATAACCGCCGTGG
TCATGCAAATTCGTGCCCCGCAATCGACACTATAATAGCAAGCACACATG
TGTTATACTCCGGAGTATGTAGCTGAAGAAATGTCCTTATTCCAATCATG
GCGAGACAACACCCCGCCCCCCCCGCGTGCAACTCTGTTTTTTTTTTCAA
TTGCGACAAAATCGCTGCATTCATCAACGGGGTCACCAGGGTGACGGAGG
AAAGTGCGCCACCCTCCCGAAAGTTGCACGAAAGCACACCCGTGCGTTAA
GGAGCGTAGACCGCTCTCGTGGTATCCGGCTAGCCATTTACCCGGAGTGG
CTGAGTGGTCTACCCTTGACCCGTGCTATTTTCTGAGCACCCGGAAATGG
TGTCGCGCAGCAGGTGTATTTTCTTGTGTCACTGACGGTAGTTCGATGCA
CCACAGGCCGTGCTTACTTCCGCGCAGGGGGTGCTCCCAAGGGGGTAGTA
GTGGTTTCAGCAACTTATTGCTCACTCCTTCTGCGGAGATTCAGCAGAAA
TCGTGACGTTGTGCTTTTCGGGCTGCAGTAACGTCCTCCTGAGGCGGGCT
GACACATGACCTCTGGCACGATTACGCACTGCGTTACCCCTCAACTTCCT
CTGGTATTGTGGCAAGGGTGGGCGGGACTTCTTTGCCCGTACAAATGTCG
CCAGAACCGTCATCTCCCCATGGGACTCAAGGTTTGCACGAACGAAATGG
GATTTTCCTCAGCAATTCTATCGCCGTTTTTCCTACGAATTTCGCGTGCG
GTTTGTGCGCGGTCTCATCAACGGTTTCATCAGACCATATCGTTGCGGAG
GAAACGAAAACCTTGAGCGAGCCAGCACGACGGTGGGCCAAGCTCAGAAA
AAATTTCCGCCTGGTGAGTAACCTGCGGTGCGGTGCATTGAAAACTGCGG
CTCGAATGAAGGGGCACCATTTTCGCGGGACAACAGCTGCAGACAACACG
GTGCTTTCGGTGTGTACTTCGGGCCGAATATTGTTTCATGGACTCAAACA
TTGTATTTTTGCACGCAACGACATCTCACCGAATTTTCTGACCTACTGAA
GCACCCCTTTGCTTGGATGAAACCGACAAGCTGAGGACTAAAGGCGCGTG
GTACTCTTCTACGCTGCTGTGCAAGCTTTCACACAAAAGCGCATCATACC
CTCTCCCGGCTCAATTTCTCCAGGCGGCCCTTCGATCCATCGCCCAGGAC
AAACGGGAAGCCCTTCAAAAGCTCCAAGAGGTACGTTCGCGCCAATCTCA
AATTCAATCCTTTGGCCTCGCTGTTCGTACGCGCTTCACGAACCATTCGA
ACCACGAGAGAATCTCGTTTGAAAGGTGCAGGTTTATTGGGCCTACGTCT
GAACACGGCACAGAGAAATACAATTCACGAGCCGACGGTCGAGTGCAACA
CGCGAAAAGAATGTGGTCGCGAAGACGCGTCGCAGCCGACCCAAGGCGAA
CGCAGACGAGATCTTTTCTGCGACGGTGACTTGATAGTGCTCCGTTGCAT
TTTGAAGCAACCTGTTTGGCCCCCTCCGTATGTTTTCGACCCCACAATGC
TACTACCGAAGGTTCGGAAGCGAGCAGACAAAGCTCAGGAAGCCCAAAGC
GACAGCCGCACGTGCAAAATCTGCTGGGATAGGTAAGCGATACCATATTG
GACGGAAACATCAGTAGCAATGAATCCCGCTGAAATTTTCCTATCCGCTA
AGGCCATGCGGATGCCCTTCGCCCGTGAGGCGATCCACATTTTCATACAT
CCCTGCACGATGTTGTTTTGAACTTGCGAACTAATTCTTCTGGATTCGAT
TGTGAGGGGCAAACGCTTGAAGGCGTGCAGGAAAGTGGGCGAGGAGGCGA
CAGAGATAGAGATAGGGAGATAGCGAAGCGTATGAATGATGAGGGAGCAG
ATCACACGACGGCACCCAGGCACTCGGTCTGCTGTGTGGTGGTGCGGTAG
ATGGCGGTAATATCTGCATATTCCCGGCTGCGTTGGGGGATTGGGGATTG
CAAGCGACTAAACAGAAGGGGTTCTTCGTGCTTTGAATGATGTCGAGTAA
TCGTCAGCCGACTTCACATCAATGTGAGGGGCACTGTAGCTTGGAGTATA
TCCTCACCGTCAACCGTCGAACTGAAGCCGTAGCTCGAAACCCTTATTCA
CTCTGGAGGCCCGAAGGTGCGCGCGACTCGCTCTGAATCCATCTACTGCA
CAGTGCTCTTCGAGTAAAGGTCTCCCGGGTCCCGTGCAAAGCATCCAACG
CTGTTGTTGTTGTCGTGACGGCCACATCCGCAGGGCGACAAATACCGTGT
GCTTGGACTGCGGGCACCAGTGCATGTGCACAAGATGCGGGGCGTGCATG
ACTTTCTGCCCCATTTGCATGCAGGTGAGGCACCCACCCCATGTTGGGTC
TCGTCACTCATGGCTCGCCCACCTTGTTCTTTTGTGTACATACCGCCAGA
GAGCACGTACGTGAGGTTCAATCTGCGTCTGTAGGCGCACCAAAAAGCCG
AAGAATGTCGGGAGAAGCAAGGCATCGGACCCCAGTCGTGGCTGCACTGC
GAGGGCAGAGCGTAGGAAGAACGCACGAAGGACGCAGCCACAAATTCGGC
ATTCATTAATTCCTCGAGATCTTTTCGGCTCAAGCTGCCGCAAGTTTGCA
GCAGATCGCGCAGGACCGGTTTCACCGTCAGCCTCGCACCGGATCGTCTG
GATTCATGAGTGCGCCCTTGCCTTCTTTTTCCGACGACCGGACATCAAGT
TCACGACTAATATTTTTCTCTGCGGCCACGGCCGTCGTTGTCGTATTGTG
TTTCTCAACGACAGGACATCTCCGACCTGGTGGAGTTGCAGTGACAAGTC
GTGCTGTCATAATTTTACAGCGTTGGACGCCTCGAGACGAAAAACAAGTC
GTAGGAGACGGGCCTTCCGAGAATTCGCGCTTATCGTGAAGAAAAGATCG
AAAGCAGCTTCACGTGTTGCCGCCAATGCAAACCAGGGCTCGTCTACGGA
GGCAGCCATGTCACGCGCTGTGGACGAGGATTGTTTCATGTATCCCATGT
GTTGTTCTCCTGCACTTGTGTTTACGATTACGTATCGTCTGTAAAAAATG
TCGTCCACACCAACCTCAGAAGATGTCGATTCGATCGAAAAAATGACGGA
TTTTGTCAGCCGTGTACCCAAAGAGGTACGGGCGGAAGATGATAGCCACA
GGGCGCGTCAGTAAGGTGTTGAATTGTTAAGATTGGTATATTTTTCATCA
CGATCGCGGATGGATCGATCATTTGTGTGCCTGCGATTGGTACGTACCGC
ATGGTCCGTGGGGACATTCTTCCTTCTGCATTCGCTGTAATGCCCAGAAG
GCTTCAATCTACCCCTGCATCTGCGAGCGTTTGCTCTCCTTCGACATTTA
CCACTTGATTTATTTACACGGTTTCGTGAGTTGCAGGGCGGCGCAGTGAT
GCCGTCGCCGAAAGTCGTGCTCCCGCGCCGGCGGTCTACAGTAAAGCTTA
GGAAGGAAATCGTTTTCGTTCGCGAGTTCGAGAGCGCGAGCCAAGAACAA
AAAGCCTGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig11:1209427..1213686+

>mRNA_P-fluviatile_contig11.1089.1 ID=mRNA_P-fluviatile_contig11.1089.1|Name=mRNA_P-fluviatile_contig11.1089.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig11:1209427..1213686+ (Porterinema fluviatile SAG_2381)
ATGTCGCCAGAACCGTCATCTCCCCATGGGACTCAAGGTTTGCACGAACG
AAATGGGATTTTCCTCAGCAATTCTATCGCCGTTTTTCCTACGAATTTCG
CGTGCGGTTTGTGCGCGGTCTCATCAACGGTTTCATCAGACCATATCGTT
GCGGAGGAAACGAAAACCTTGAGCGAGCCAGCACGACGGTGGGCCAAGCT
CAGAAAAAATTTCCGCCTGATGTCGCCAGAACCGTCATCTCCCCATGGGA
CTCAAGGTTTGCACGAACGAAATGGGATTTTCCTCAGCAATTCTATCGCC
GTTTTTCCTACGAATTTCGCGTGCGGTTTGTGCGCGGTCTCATCAACGGT
TTCATCAGACCATATCGTTGCGGAGGAAACGAAAACCTTGAGCGAGCCAG
CACGACGGTGGGCCAAGCTCAGAAAAAATTTCCGCCTGGCGGCCCTTCGA
TCCATCGCCCAGGACAAACGGGAAGCCCTTCAAAAGCTCCAAGAGGCGGC
CCTTCGATCCATCGCCCAGGACAAACGGGAAGCCCTTCAAAAGCTCCAAG
AGGTTCGGAAGCGAGCAGACAAAGCTCAGGAAGCCCAAAGCGACAGCCGC
ACGTGCAAAATCTGCTGGGATAGGTTCGGAAGCGAGCAGACAAAGCTCAG
GAAGCCCAAAGCGACAGCCGCACGTGCAAAATCTGCTGGGATAGGGCGAC
AAATACCGTGTGCTTGGACTGCGGGCACCAGTGCATGTGCACAAGATGCG
GGGCGTGCATGACTTTCTGCCCCATTTGCATGCAGGGCGACAAATACCGT
GTGCTTGGACTGCGGGCACCAGTGCATGTGCACAAGATGCGGGGCGTGCA
TGACTTTCTGCCCCATTTGCATGCAGGACATCTCCGACCTGGTGGAGTTG
CAGTGAGACATCTCCGACCTGGTGGAGTTGCAGTGA
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