mRNA_P-fluviatile_contig1.542.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.542.1
Unique NamemRNA_P-fluviatile_contig1.542.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.542.1 vs. uniprot
Match: A0A6H5JGB4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGB4_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.480e-37
Identity = 81/100 (81.00%), Postives = 86/100 (86.00%), Query Frame = 2 
Query:    8 MNALRSARPTAVVKAAAARLATNSRGRKIVRDPRKAKKRPSASTALEEVREEERAPAPP-FQPFLQQPSTPQSLGSSMAQSMIWGVGMALAFTAVGMFFR 304
            MNA+RSARP A + AA ARLAT+SRGRKIVRDPRKAK+RP ASTALEEVREEERAPA P FQPFLQQ   PQ+ GSSM QSM WGVGMALAFTAVGM FR
Sbjct:    1 MNAVRSARPRAAMNAAVARLATSSRGRKIVRDPRKAKQRPRASTALEEVREEERAPAAPKFQPFLQQDPAPQTFGSSMLQSMTWGVGMALAFTAVGMMFR 100
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BLAST of mRNA_P-fluviatile_contig1.542.1 vs. uniprot
Match: V9F9J0_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=V9F9J0_PHYPR)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:  170 APAPPFQPFLQ-QPSTPQSLGSSMAQSMIWGVGMALAFTAVGMFFR*QRETPPP 328
            AP PP  PF+Q +  TPQ+ G  M +S +WG+GMA AF+ VG+ F    ET  P
Sbjct:   58 APPPPANPFVQSEQQTPQTFGGVMKESFVWGLGMAAAFSVVGIIFSSMEETTSP 111
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BLAST of mRNA_P-fluviatile_contig1.542.1 vs. uniprot
Match: H3H280_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H280_PHYRM)

HSP 1 Score: 53.9 bits (128), Expect = 2.640e-5
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 2 
Query:  170 APAPPFQPFLQ-QPSTPQSLGSSMAQSMIWGVGMALAFTAVGMFFR*QRETPPPSD 334
            AP PP  PF+Q +   PQS G  M +S +WG+GMA+AF+ VG+ F    ET  P +
Sbjct:   54 APPPPANPFVQSEQQAPQSFGGVMKESFLWGMGMAVAFSVVGVVFSSMEETTSPGE 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGB4_9PHAE1.480e-3781.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
V9F9J0_PHYPR2.590e-548.15Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
H3H280_PHYRM2.640e-546.43Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5855624..5858934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001200.1
Exons3
Model size1384
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.542.1prot_P-fluviatile_contig1.542.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5856701..5858927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.16067-UTR-P-fluviatile_contig1:5855623..58567001622815350.16067-UTR-P-fluviatile_contig1:5855623..5856700Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5855624..5856700 -
1693561564.6024878-UTR-P-fluviatile_contig1:5855623..58567001693561564.6024878-UTR-P-fluviatile_contig1:5855623..5856700Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5855624..5856700 -
1622815350.2021976-UTR-P-fluviatile_contig1:5858927..58589341622815350.2021976-UTR-P-fluviatile_contig1:5858927..5858934Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5858928..5858934 -
1693561564.6365252-UTR-P-fluviatile_contig1:5858927..58589341693561564.6365252-UTR-P-fluviatile_contig1:5858927..5858934Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5858928..5858934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.1733413-CDS-P-fluviatile_contig1:5856700..58567501622815350.1733413-CDS-P-fluviatile_contig1:5856700..5856750Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5856701..5856750 -
1693561564.6116636-CDS-P-fluviatile_contig1:5856700..58567501693561564.6116636-CDS-P-fluviatile_contig1:5856700..5856750Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5856701..5856750 -
1622815350.1837535-CDS-P-fluviatile_contig1:5857074..58572131622815350.1837535-CDS-P-fluviatile_contig1:5857074..5857213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5857075..5857213 -
1693561564.619088-CDS-P-fluviatile_contig1:5857074..58572131693561564.619088-CDS-P-fluviatile_contig1:5857074..5857213Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5857075..5857213 -
1622815350.192807-CDS-P-fluviatile_contig1:5858816..58589271622815350.192807-CDS-P-fluviatile_contig1:5858816..5858927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5858817..5858927 -
1693561564.6271157-CDS-P-fluviatile_contig1:5858816..58589271693561564.6271157-CDS-P-fluviatile_contig1:5858816..5858927Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5858817..5858927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.542.1

>prot_P-fluviatile_contig1.542.1 ID=prot_P-fluviatile_contig1.542.1|Name=mRNA_P-fluviatile_contig1.542.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=100bp
MNALRSARPTAVVKAAAARLATNSRGRKIVRDPRKAKKRPSASTALEEVR
EEERAPAPPFQPFLQQPSTPQSLGSSMAQSMIWGVGMALAFTAVGMFFR*
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mRNA from alignment at P-fluviatile_contig1:5855624..5858934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.542.1 ID=mRNA_P-fluviatile_contig1.542.1|Name=mRNA_P-fluviatile_contig1.542.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3311bp|location=Sequence derived from alignment at P-fluviatile_contig1:5855624..5858934- (Porterinema fluviatile SAG_2381)
AGGGGAGATGAACGCTTTGAGGTCTGCGCGTCCAACGGCGGTGGTGAAGG
CAGCCGCCGCTCGGCTCGCCACGAACAGCAGGGGTAGAAAGATTGTTCGT
GACCCCAGAAAGGCGAAGGTGCGTGAATCCTGACAGTCCCGCCTGCTTCG
ACGTCGCCAACGGCCGAGTGTGGAATATGCCGGCCCTCTCACACAGCAGT
TAACATCTCCAGCTGCTGTGCGCGAAGTGTAAACCGAGAGGATCGGGCCG
ATCCTTCGCGCAATACTGCTGCTTTTCTTTGATTCCACATGCTCCCAACG
TGCAGCAGAAGGAGGTGGTTCTGTGCTCGCTACTCTGTGCCTGAACCCGT
CCATTGGACCCTTGTTGAAGGGCTTCGACAAAGGCAAGAAGGCACAAGAA
GGCACACGTTCTTCGCCGATTTCCAAAGCCTACTAGAAGCCGTAGCTCGG
TAAATCGGTAGAAACTTGCCACTGACGAGAAGGGGTGCTTTTGGGAATGT
CGCGTCAAGATTTTCCCCCGACTGCAGAATGCTTGAACTAGCTCGGGAGC
AATCGGGCTTTGGAAATTGACCAGGGGCGCGCTTTAAGGAGCTCCACGCT
TCAATGCAGTGTGCAGTGTCTGGAAATCGAAGTATAGAGTACGGCACACT
GCTGTATCACTCGGGTCGAAAACATCGATTCCCTTAGTCAGGTTCGGTAC
TCTCCGGTGACGCCACACGCTTCGGTTCGACAGCGCCAGCATAAGGCTTC
GGGCCTTGGCCGAGCTTGCCGATGCGCATGCCGTTTCTTGAGAGCGTCCC
CCTTGATTTCACTCTCCAAATGGGGGCAGGAAGGCGTTTTCCACATGTTG
ACGCCGTCTGGATCGCAAAGTGTTGATTTTAAATGAACAAAGAGACTGCA
AAATTCGATGCATGCTTGGGGGGGGGGGAGTTGAGATCCCGACTTTGCCG
TGGTGAAGAAGCCCCCCATCCCGATCTACGCCTGCGTGTACTCGTTTGGT
GAAGATAGCAACAAAATGCTGGTTAAGTGTGACATATTATGTATGATTAA
TCTTCAGCCTTTCCAATACACCGAGTTACCTACTTGTATAAGATGCGTTG
CTTCTGTGGTTACCATTACGTGCTTGGCAACGAACAGATATGTGTGACGG
GTTCGAGTGCTGTCCTCGTGAACGGTCGTCAACAATCCTGAAATCTGCCT
GTGTGGCGATTGCATCAACCACAACTGCGGCAGAGGCCTCTGCTTGCACC
ACCCGAATAGCAGCACCTGCTGCCGATCATGAGACCTTGCCCGTGGACCA
CACGCTTGCTCCTTCGCTAGGTCATTTCTTTTGCTCAAGAAGTATCATTT
CCTGAGACTGACCGTACCGTATCAATCTGAAAATTGAACAGTTGGTCTCT
CTCTCTGCCCGTCTCTCTCTTTCTCTCTCTCTCTGCCCGTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCGCTCTCTCGCTCTCATTCTCCCTACTTTCCCCCTTTTTCCT
AGCATGCCTCTCGTCCGTATCTTTATCGAAAAGCCTTGGATGAACTCGTT
CGTATCTTTTCAACAACCCTTGGATGAAATGCGTTGAAGGAATTACCCCC
TCACACACACCTGCTTGACAGTTTCCACTACCTTGCCTCTTTTGCCACCT
TGCGTGCCTAAACCTGAACAGAAACGGCCAAGCGCGTCGACGGCGCTCGA
GGAGGTTCGGGAGGAAGAACGTGCACCAGCGCCTCCATTCCAGCCATTTC
TCCAGCAGCCCTCCACACCGCAGAGCCTGGGGAGCAGCATGGCGCAGTCC
ATGATTTGGGGTGAGCCACTGGTGTGGACGTTCCTTGCTTAGCGGTGGAT
GGATCTTCTTGTCGATAGGCTGATCTCGATCGAATTGAGCTTCGCATACG
CATTTGGTCCATTTTACCTGCCGTCAGCCCCGTTTTCTGAGTGCTCCCCG
TATCAATTGCGGTCGTCTTGTTTGGATGATTTCTCTCGCAAATCCGAACT
TTTGCACGGTCACAGATTCATAAGCGAACTTCAAGAGAGAATGATCGCGA
ACATCTTAAAGCTTTTCGTCATGCAATCCCCGACCAGGCACCTCGCTCTT
CGCGCAACCGCCCACCCAAACCGTGGTACCCCAGGTGTGGGAATGGCGCT
GGCGTTCACTGCTGTCGGAATGTTCTTCCGATAACAACGCGAGACGCCTC
CACCTAGTGACACGAACTACCCTCGGGGTCGCCTTGGGCAAAAGAAATTG
GGTCACACCAACTGATCCGTCTCGAGAGGAGCCATTCTCTCTCGCGGCTT
CAAGTGACGGTATCCAACGTTCTGATGTGGGTTGCGTGCATGCGGGGTCG
TTAATATTCCTCCTCTTAACATATATGTTTCTCCACGGCTTGTGGGCAGA
CGTTTTCCAGCCTCCAGATTGAGGGCAGCCGTTTCGTCAGTGCCTAGGAA
ACGTTGCTGCTTTACCGTGTCATACCGTGTCCCACTCGCCTCGTGCGCAC
AACCTGACATCTTTGGTTCATTGGATTTGACTGCATGCTCTGGAATCGAA
GGTGGTCGAAGGGAGGTAGATGAATAACCGCCGGCGCACGACGACCGTCG
AGGATATCAGCGATCGGGGATTTGTAATTTATCTCAGAAAGGAGGCATGC
CTTGCGGCCGCCGAACAGTTGCCGGCGTAGGTCCCGACTTGCCTCCAACA
GCATTAACCCAATGAAACCTCGGGAACCTGGGGATCGCAGACGTGTGATC
ACTGAGGGTAGGTCCCCTCGACTTGGCGTCGGAATTCCTGAGGTTGTCCG
CAGCATGGAGGACACAGCTTGGGGGAGGATGGGTTGCTTTACTTGCAGGG
TAACGATCCATCTATTCAGATATTCTCCCAGCGGCGGCATCGCCAATTTG
ACGCAACTGGTATGTTTCCACTTTTTCGCTGGCCAAGATCCGCTGCCAAG
TATTGTAGTACCATCTGCTAGAGTGGGCGTACTTTTCACGCGTTACGGGT
TCGGGGTGAAGGCACCGAGTTGCTGTGGCTTGTTCAGCCCCTTTGGCCCG
TAAAAACTGGAGGAACTCAGCTGTGTCCTTTGTCATGATCGAGCCCGTGG
GATGGATCTGGCAGTTGAGTCATTGGATGGTGGAAGATATGGTTGGCCTG
ACGGCGGAACCAGTCGATTTTTTTGGATTCGGGAAGTTATCCAAAAAAAT
AACATTTTTGCCTATGCGACAAGCTCGCTCCGTGTCTGCAGCATTTTCAT
GTGATGCCCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5855624..5858934-

>mRNA_P-fluviatile_contig1.542.1 ID=mRNA_P-fluviatile_contig1.542.1|Name=mRNA_P-fluviatile_contig1.542.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=600bp|location=Sequence derived from alignment at P-fluviatile_contig1:5855624..5858934- (Porterinema fluviatile SAG_2381)
ATGAACGCTTTGAGGTCTGCGCGTCCAACGGCGGTGGTGAAGGCAGCCGC
CGCTCGGCTCGCCACGAACAGCAGGGGTAGAAAGATTGTTCGTGACCCCA
GAAAGGCGAAGATGAACGCTTTGAGGTCTGCGCGTCCAACGGCGGTGGTG
AAGGCAGCCGCCGCTCGGCTCGCCACGAACAGCAGGGGTAGAAAGATTGT
TCGTGACCCCAGAAAGGCGAAGAAACGGCCAAGCGCGTCGACGGCGCTCG
AGGAGGTTCGGGAGGAAGAACGTGCACCAGCGCCTCCATTCCAGCCATTT
CTCCAGCAGCCCTCCACACCGCAGAGCCTGGGGAGCAGCATGGCGCAGTC
CATGATTTGGGAAACGGCCAAGCGCGTCGACGGCGCTCGAGGAGGTTCGG
GAGGAAGAACGTGCACCAGCGCCTCCATTCCAGCCATTTCTCCAGCAGCC
CTCCACACCGCAGAGCCTGGGGAGCAGCATGGCGCAGTCCATGATTTGGG
GTGTGGGAATGGCGCTGGCGTTCACTGCTGTCGGAATGTTCTTCCGATAA
GTGTGGGAATGGCGCTGGCGTTCACTGCTGTCGGAATGTTCTTCCGATAA
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