mRNA_P-fluviatile_contig1.540.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.540.1
Unique NamemRNA_P-fluviatile_contig1.540.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.540.1 vs. uniprot
Match: D7FGR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR2_ECTSI)

HSP 1 Score: 508 bits (1309), Expect = 8.410e-168
Identity = 354/715 (49.51%), Postives = 421/715 (58.88%), Query Frame = 1 
Query:    1 MQPDDIHFAVVWPTAHDGPARKARQCPLSCPEDCSVIVPFQCSLAEASTTVGCFAASHRKLPC--GVGEIETSVLGSFCMFSSPTSVPPALIVVGTKSWSCASSVFAFIRCVQADLARDQADFGYWQLRSLALRTEAVVPSPGDESSNVLP-RLLEEYNWDDEQSESWEDDDMWLG-TADAAEISNAKAEMDGLRSEATTDASQLQRI--ADLQVEAFVPSEDQNSSRVPAAPLLE----QAYPQVPLIQVDLDDEPST---RXXXXXXXXQLRQHASPTVFDSGLAVVDQMASSVTDTGGENSSLIHSQHAPTPAAAITQTPGAPSCSSALSLDLDVR-AELSPLLGV-LSPSSEKDESSELPS-QAEDLS-MHVAPAKGRFNAAAATGAETPAGVDAPVAISGDAGEAAAAAITANAEG------------NTDVSQAAAAGTTV------------------AVSAAVSEDLAYVHQGSVLKSFAITGSVLVAASHGARARLRITDKHGHIANATAISVVAAENTAGSISPTREYVCKAGPVQQAGAPPKFLRAVAYRCSPAVKILPVRVTCRLNSAGNSLLVWAQVIANPQLPQPLCGVSVLVSLPFSPRNEGHVQSEPPATLKPDRKMLEWVLPMKMKPGGKQVMQARLIIDEGQMAGAAIQQTAPAMVKCHLLDSTFSSVELEIAAMAEERGQVDAGRVMKRCRVQCTQ 2004
            M P DIHFA VWP A DG ARK             VIVP QCSLAEAS TVG      RK P   G  +IET  LG FC+FS+ TS PPAL+VVGTKSW C+  VFAF+R VQ DLARD +DFG+WQLR LA R EA +   GD++S  +P RL E  NWDDE+SESWED+ MW   T D   ++ A A  D  R  +    S+  R     + +     S+  +++    A   E    QA   +PL ++  D  P     R        Q  Q  S   F  G  VVD+  S V D G     LI ++ AP   A  T  P +P+  +   L    + A  SPL     S S+  DE S L +  A DLS +  +  KGRFNA      + P+ V  P A+  +  + A   +     G              D   AAA GTT                    VSAAVSEDLAYVH+G  L+S+ ITGSVLVAAS GARA++R+TDK GHIA ATA   VA E  A +I  TREY+CK G VQ  GAPP+FL A+ YRCSPAVK+LPVRVTCRL +AGN +LVW QVIANPQL  PL GV VLV+LPFSPR+EG V+SEPPA+LK DRKMLEWVLP  M+ GGKQV+QARL  DEGQ+  AAI QTAPAMVKCHLLDSTFSSVELE+AA+AEE      G V+KRCRVQC Q
Sbjct:    1 MLPGDIHFAAVWPAAPDGAARK-------------VIVPLQCSLAEASRTVGNLVGLPRKQPPTPGASKIETLALGPFCVFSTSTSTPPALVVVGTKSWGCSPGVFAFLRRVQTDLARDPSDFGFWQLRHLASRVEASLHPAGDDASYAMPPRLFEGRNWDDEESESWEDEYMWSDETVDNDGLTGATAVPDDARDMSPVPVSEPLRSDGVSMALSPLTVSQPDDANARTGATKTEHTTGQADEGIPLNKMVFDGLPPKAPHRPTKPMTTDQRTQQPSGPGF--GSPVVDRRPSPVGDRGSPL--LIPAEQAP---ALATAQPASPNLDADKLLPPSAKGAGFSPLRSDGESSSATPDEVSGLQAVSAIDLSALTTSSMKGRFNAPVG---DQPSTVVGPAAVVKETVDGARTGVPGGETGIQPAAEPHAISPQVDALAAAATGTTADLQDRVGDAGPETEPDNATVSAAVSEDLAYVHRGPDLQSYGITGSVLVAASCGARAQVRVTDKQGHIATATAYPNVAEEKPAMAIPSTREYLCKPGAVQHGGAPPRFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLSHPLSGVLVLVNLPFSPRDEGDVKSEPPASLKMDRKMLEWVLPSGMQRGGKQVLQARLSADEGQVRVAAIPQTAPAMVKCHLLDSTFSSVELEVAALAEEGVAPAGGSVVKRCRVQCKQ 692
[Close]
BLAST of mRNA_P-fluviatile_contig1.540.1 vs. uniprot
Match: A0A6H5JKK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK0_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 1.100e-119
Identity = 284/593 (47.89%), Postives = 342/593 (57.67%), Query Frame = 1 
Query:  349 DQADFGYWQLRSLALRTEAVVPSPGDESSNVLP-RLLEEYNWDDEQSESWEDDDMWLG-TADAAEISNAKAEMDGLRSEATTDASQLQRI--ADLQVEAFVPSEDQNSSRVPAAPLLEQAYPQ----VPLIQVDLDDEPST---RXXXXXXXXQLRQHASPTVFDSGLAVVDQMASSVTDTGGENSSLIHSQHAPTPAAAITQTPGAPSCSSALSLDLDVRAELSPLLGV-LSPSSEKDESSELPS-QAEDLS-MHVAPAKGRFNAAAATGAETPAG--------VD-APVAISG------------------DAGEAAAAAITANAEGNTDVSQAAAAGTTVAVSAAVSEDLAYVHQGSVLKSFAITGSVLVAASHGARARLRITDKHGHIANATAISVVAAENTAGSISPTREYVCKAGPVQQAGAPPKFLRAVAYRCSPAVKILPVRVTCRLNSAGNSLLVWAQVIANPQLPQPLCGVSVLVSLPFSPRNEGHVQSEPPATLKPDRKMLEWVLPMKMKPGGKQVMQARLIIDEGQMAGAAIQQTAPAMVKCHLLDSTFSSVELEIAAMAEERGQVDAGRVMKRCRVQCTQ 2004
            D +DFG+WQLR LALR EA +   GD++S  +P RL E  NWDDE+SESWED+ MW   T D   ++   A  D  +  +    S+  R     + +     S+ ++++ +      E A       V L ++  D  P     R        Q  Q  S   F  G  VV +  S V   G     LI    AP  A A+ Q   A   +  L     + A  SPL     SPS+  DE S L    A DLS +  +  +GRFNA       T  G        VD AP  + G                  D+  AAA    A  +     S A        VSAAVSEDLAYVH+G  L+S+ ITGSVLVAAS GARA++R+TDK GHIA ATA   VA E  A ++ PTREY+CK G VQ  GAPP+FL A+ YRCSPAVK+LPVRVTCRL +AGN +LVW QVIANPQLPQPL GVSVLV+LPFSPR+EG V+SEPPATLK DRKMLEWVLP  M+ GGKQV+QARL  DEGQ+  AAI QTAPAMVKCHLLDSTFSSVELE+AA+A+E      G V+KRCRVQC Q
Sbjct:   32 DASDFGFWQLRHLALRVEASLSPAGDDASYAMPPRLFEGRNWDDEESESWEDEYMWSDETVDNDGLTGVTAVPDDAKDMSPVPVSEPLRSDGVSMALSPLTVSQPEDANTLTGVTRTEHATGHADEGVSLNKMFFDGLPPKAPHRPTKPMMTDQRTQQPSGPGF--GSPVVGRRPSPVGYRGSPL--LIPPDQAP--ALAMAQPANANVDADKLLPPSAMGAGFSPLRSDGESPSATPDEVSGLQGGSAVDLSTLTTSSMEGRFNAVVGDEPSTVVGPTTVVKETVDGAPTGVPGGETGIQPAAEPHAISPQVDSLPAAATGTKAGLQDRVGDSGAETEPDNAMVSAAVSEDLAYVHRGPELQSYGITGSVLVAASCGARAQVRVTDKQGHIATATANPNVAEEKPAIAVPPTREYLCKPGAVQHGGAPPRFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLPQPLSGVSVLVNLPFSPRDEGDVKSEPPATLKTDRKMLEWVLPSGMQQGGKQVLQARLSADEGQVRVAAIPQTAPAMVKCHLLDSTFSSVELEVAALAKEGVAPAVGSVVKRCRVQCKQ 618
[Close]
BLAST of mRNA_P-fluviatile_contig1.540.1 vs. uniprot
Match: B5YM56_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM56_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 1.310e-5
Identity = 44/166 (26.51%), Postives = 81/166 (48.80%), Query Frame = 1 
Query: 1516 KFLRAVAYRCSPAVKILPVRVTCRLNSAGNSLLVWAQVIANPQLPQPLCGVSVLVSLPFSPRNEGHVQSEPPATLKPDRKMLEWVLPMKMKPGGKQVMQARLIID-------EGQMAGAAIQQTAPAMVKCHLLDSTFSSVELEIAAMAEERGQVDAGRVMKRCRV 1992
            ++   V Y+CS +++ +P+RV  R+ + G S  V  Q+ +NPQ P  L  +++++ +P   R E  +Q  PP  +  + K +      ++  G K  +QA   ID       EG M   A +   P + +C    +  S+V LE++ + +      +  V++R RV
Sbjct: 1099 QYFPVVRYKCSSSLRPVPIRVQNRVRTQGKSCRVALQISSNPQNPNELVQLTIIMGVPSGVRGES-LQCNPPGGVWNEAKSVVLWCVSELGGGEKFQLQAIFDIDDELLNSSEGDMTDLAEKLEFPVLARCQCSSAQLSNVMLEVSDVPDLFPAEVSKSVIRRFRV 1263
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGR2_ECTSI8.410e-16849.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKK0_9PHAE1.100e-11947.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5YM56_THAPS1.310e-526.51Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5838426..5842172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score524.2
Seed ortholog evalue8.7e-146
Seed eggNOG ortholog2880.D7FGR2
EggNOG OGs2E9RS@1,2SG2K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001180.1
Exons6
Model size2246
Cds size2013
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.9467137-CDS-P-fluviatile_contig1:5838425..58385301622815349.9467137-CDS-P-fluviatile_contig1:5838425..5838530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5838426..5838530 +
1693561564.0050647-CDS-P-fluviatile_contig1:5838425..58385301693561564.0050647-CDS-P-fluviatile_contig1:5838425..5838530Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5838426..5838530 +
1622815349.9608085-CDS-P-fluviatile_contig1:5838647..58387621622815349.9608085-CDS-P-fluviatile_contig1:5838647..5838762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5838648..5838762 +
1693561564.0164356-CDS-P-fluviatile_contig1:5838647..58387621693561564.0164356-CDS-P-fluviatile_contig1:5838647..5838762Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5838648..5838762 +
1622815349.9724295-CDS-P-fluviatile_contig1:5839363..58394901622815349.9724295-CDS-P-fluviatile_contig1:5839363..5839490Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5839364..5839490 +
1693561564.0265093-CDS-P-fluviatile_contig1:5839363..58394901693561564.0265093-CDS-P-fluviatile_contig1:5839363..5839490Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5839364..5839490 +
1622815349.988064-CDS-P-fluviatile_contig1:5839780..58400411622815349.988064-CDS-P-fluviatile_contig1:5839780..5840041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5839781..5840041 +
1693561564.0380602-CDS-P-fluviatile_contig1:5839780..58400411693561564.0380602-CDS-P-fluviatile_contig1:5839780..5840041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5839781..5840041 +
1622815349.9969242-CDS-P-fluviatile_contig1:5840234..58413331622815349.9969242-CDS-P-fluviatile_contig1:5840234..5841333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5840235..5841333 +
1693561564.0498676-CDS-P-fluviatile_contig1:5840234..58413331693561564.0498676-CDS-P-fluviatile_contig1:5840234..5841333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5840235..5841333 +
1622815350.0093105-CDS-P-fluviatile_contig1:5841633..58419391622815350.0093105-CDS-P-fluviatile_contig1:5841633..5841939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5841634..5841939 +
1693561564.067843-CDS-P-fluviatile_contig1:5841633..58419391693561564.067843-CDS-P-fluviatile_contig1:5841633..5841939Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5841634..5841939 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.019828-UTR-P-fluviatile_contig1:5841939..58421721622815350.019828-UTR-P-fluviatile_contig1:5841939..5842172Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5841940..5842172 +
1693561564.078306-UTR-P-fluviatile_contig1:5841939..58421721693561564.078306-UTR-P-fluviatile_contig1:5841939..5842172Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5841940..5842172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.540.1prot_P-fluviatile_contig1.540.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5838426..5841939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.540.1

>prot_P-fluviatile_contig1.540.1 ID=prot_P-fluviatile_contig1.540.1|Name=mRNA_P-fluviatile_contig1.540.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=671bp
MQPDDIHFAVVWPTAHDGPARKARQCPLSCPEDCSVIVPFQCSLAEASTT
VGCFAASHRKLPCGVGEIETSVLGSFCMFSSPTSVPPALIVVGTKSWSCA
SSVFAFIRCVQADLARDQADFGYWQLRSLALRTEAVVPSPGDESSNVLPR
LLEEYNWDDEQSESWEDDDMWLGTADAAEISNAKAEMDGLRSEATTDASQ
LQRIADLQVEAFVPSEDQNSSRVPAAPLLEQAYPQVPLIQVDLDDEPSTR
RQQQQKQQQLRQHASPTVFDSGLAVVDQMASSVTDTGGENSSLIHSQHAP
TPAAAITQTPGAPSCSSALSLDLDVRAELSPLLGVLSPSSEKDESSELPS
QAEDLSMHVAPAKGRFNAAAATGAETPAGVDAPVAISGDAGEAAAAAITA
NAEGNTDVSQAAAAGTTVAVSAAVSEDLAYVHQGSVLKSFAITGSVLVAA
SHGARARLRITDKHGHIANATAISVVAAENTAGSISPTREYVCKAGPVQQ
AGAPPKFLRAVAYRCSPAVKILPVRVTCRLNSAGNSLLVWAQVIANPQLP
QPLCGVSVLVSLPFSPRNEGHVQSEPPATLKPDRKMLEWVLPMKMKPGGK
QVMQARLIIDEGQMAGAAIQQTAPAMVKCHLLDSTFSSVELEIAAMAEER
GQVDAGRVMKRCRVQCTQQV*
back to top

mRNA from alignment at P-fluviatile_contig1:5838426..5842172+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.540.1 ID=mRNA_P-fluviatile_contig1.540.1|Name=mRNA_P-fluviatile_contig1.540.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3747bp|location=Sequence derived from alignment at P-fluviatile_contig1:5838426..5842172+ (Porterinema fluviatile SAG_2381)
ATGCAGCCAGATGACATACATTTCGCCGTCGTCTGGCCTACAGCTCATGA
TGGACCAGCGAGAAAGGCGAGACAGTGCCCGCTCTCATGTCCTGAAGACT
GCAGTGTTCGTGATGCTGCCGCCGTTGTCACTAGACGCTGTTTCCCCCCA
ATGTGCAAGCAAGGTTATCGCCGCCAGTGCGCGCCTCCTTTGCCTGACAA
ATGTGTTCATTTCACAACGCAGGTAATTGTGCCGTTCCAGTGCTCGTTGG
CAGAGGCGTCGACGACGGTCGGGTGCTTTGCGGCCTCTCACAGAAAACTT
CCATGTGGAGTTGGCGAGATCGAGACGTCGGTACTCGGTGAGTCCCCGTC
CGGTGTGTATGGAACGCACACATTCATACTTCTCAGCAGCTGCTCCTCGA
TCGCAAGGAAGGGTCGTCTGTGCCATAAGCCAGACTCGTAGGAAGCATGT
GAATATCGTACCTAAAGCTGTGCAACGGCACAGGGAGGTACGCCTCCGAT
CCCTTCGCCGTTGGGTCTTGTCCATGTTGTGGTGAATAAGAACTCTGGCC
CGAACAAGAGTACATTGTGGCCGAGGGCTCAATGCTTTAAGAGCGACAGA
GGCGTGACAGTCTACCTGTTAGTAGACTCACCACATTTGAGGTCTCTCAT
CCGCTCAAAGGTGGCTGCAGCAAGCGTGATACAACACGTGGCTGAGATTT
GATCACGATGTTGATTTCACCCCTGGTCGTTCATCAGCAGCAACATGGAC
TCCGCGGTGTTTGTGTGGCACCTGCTTTGACCACACACTGGTGAGTCTCT
TCACGATCTCTTCCCTGCAGGACGTGCTGAATCGGATCAACGCGACCATC
TCACCAAACTCGAACAACTCTACACGATTTTTGGTTTTTGATCTTTGTGC
CTTCGCCTGCCCGTTAACGTCTGTTGATTGACGCCAAGGTTCATTTTGCA
TGTTCAGCTCCCCTACTTCTGTGCCACCAGCGTTGATCGTGGTGGGAACC
AAGAGCTGGAGCTGTGCCTCAAGCGTCTTCGCCTTCATCAGATGTGTCCA
GGCAGATCTTGCAAGGTATGACACATCTTGGCGGCACATCAGGCTGATTG
GGGTACATCAAGGACGGGGATTTCGAGGACACGGGTGCACCTCGGTGTGC
AGATGGCATGTCATCCTAGATTGCTGACGACGCGCACGTTAGTGCCGTAC
ATCTCTCAAAAGAGAACGTTAAGCTTAGGCCTAAAAGTGTACGTTGAAAA
CATTTACCCCTTGTTCCCAGCATCGCAAAAGGAATTGTGCTGTCATTTCC
CCTGCTGGTTTGCCTCACCGCCCTCCAAACCAACTCGACGAACTCGCATG
CGCAGAGACCAGGCGGACTTCGGGTATTGGCAGCTACGGTCTCTTGCCTT
GCGCACCGAGGCGGTGGTGCCATCACCCGGCGATGAAAGCAGCAATGTGC
TACCCCGGTTACTCGAGGAATACAACTGGGACGATGAACAGAGCGAGTCC
TGGGAGGACGACGATATGTGGTTGGGGACGGCGGATGCTGCCGAAATTTC
GAACGCAAAGGCGGAAATGGACGGCCTGAGGAGCGAAGCGACAACAGATG
CTTCCCAACTACAAAGGTGAGAAGAACATGCAGGCTTTACTAGGGTTTTC
TCACCTTGCCCCCTTGCCCTGTTTTTTCATGTTCTGTTGGAGTGCCGATT
CTTGATTGTCACGCCGTACTTGACGTAGAATGCTTCAACTCACAGCAACG
TACGTCTCCATTGCTCTGCAAATACGGCGTACCTGCTTTCTTGTTGCTCG
GCATTCCAGGATCGCTGATCTGCAGGTGGAAGCTTTCGTCCCTTCAGAGG
ATCAGAACTCCTCGCGTGTGCCCGCAGCACCACTGCTCGAGCAAGCCTAT
CCGCAGGTGCCTCTCATCCAAGTGGACTTAGATGACGAGCCGTCGACACG
TCGGCAGCAGCAGCAGAAGCAGCAGCAGCTCCGGCAGCATGCATCGCCTA
CAGTCTTCGACTCCGGTCTGGCTGTAGTGGACCAAATGGCGTCTTCTGTT
ACGGATACCGGGGGCGAGAACTCCTCGCTGATTCACTCCCAACATGCACC
GACGCCTGCGGCGGCGATCACCCAGACACCAGGAGCACCATCGTGCTCGA
GCGCGTTGTCGCTGGATTTGGATGTGCGAGCTGAACTATCTCCGTTACTT
GGTGTGCTATCGCCAAGCAGCGAAAAAGATGAAAGCTCGGAGTTGCCATC
GCAAGCGGAGGATCTATCAATGCACGTGGCGCCTGCGAAAGGGCGATTCA
ATGCTGCGGCGGCGACTGGTGCCGAAACTCCAGCAGGTGTTGACGCACCA
GTGGCTATTTCAGGGGATGCTGGGGAAGCAGCCGCCGCCGCCATCACTGC
CAACGCTGAAGGCAATACCGATGTCAGCCAAGCAGCGGCAGCTGGCACCA
CTGTGGCGGTTTCAGCCGCGGTGAGCGAAGACCTGGCTTACGTTCACCAA
GGTTCGGTTCTCAAGAGCTTCGCCATCACCGGGTCCGTTCTGGTCGCGGC
TTCCCATGGGGCCCGCGCTCGGTTGCGGATCACAGATAAACACGGGCACA
TTGCCAACGCAACAGCAATCTCCGTCGTGGCAGCCGAAAATACGGCGGGC
AGCATTTCGCCCACGAGAGAGTACGTGTGCAAGGCTGGACCGGTACAGCA
AGCCGGGGCGCCGCCCAAGTTTCTTCGGGCTGTGGCGTATCGCTGCTCCC
CGGCCGTGAAAATTCTGCCCGTCAGAGTTACCTGCCGTCTGAATAGTGCC
GGAAACAGTCTGCTCGTGTGGGCCCAAGTCATCGCCAACCCACAGCTGCC
GCAACCACTTTGCGGAGTGTCAGTGCTGGTCAGCTTACCGTTTTCGCCCC
GCAACGAGGTGATTTCCCGACTTGTCATCGAAGGAGAACTTAAAATTTGA
ACGAGCTCGTCTGTGAGGGAGAGCAGGCTCTGTAGCGCTGAGTTGTTTCA
CGTGGCTTGGATTGATGAAATCTGCAAGCCTTCGTTTAGGAAACGTTTTA
GACACTCAAAATTTATGAACTGTCGCGCTAGTCTGCTCGATCCCTTTCGT
GCGCGCTCAATCGTCGGCCAATCCTTGATTTGGCCGAGACTGAATGCTAA
AGGCAGCCGTGCAATGAGACGCGACCCCGTTTTCACCTCTTTCACTTCGC
CCCGCCAGGGTCACGTCCAATCTGAGCCTCCAGCAACTTTGAAGCCCGAT
CGCAAGATGCTGGAGTGGGTGTTACCGATGAAAATGAAGCCAGGAGGAAA
GCAGGTCATGCAAGCGCGGTTGATCATAGACGAGGGGCAAATGGCGGGGG
CGGCCATCCAGCAAACCGCCCCGGCCATGGTCAAGTGCCACCTGCTAGAT
TCAACGTTCTCGTCTGTTGAGCTCGAGATAGCGGCGATGGCGGAGGAACG
GGGGCAAGTCGATGCCGGTAGAGTCATGAAGCGATGCCGTGTTCAGTGTA
CGCAGCAGGTATAGAAGTTTTTTGTAGTGTCCTTTTTGTCGGGCGGGGTA
CGCGTTTGTTAAGGCGCGAGATTGGAGTCGCTACGAGCGGATCAATGAGT
GACAATAACAGCTTTTCAGGCAGTTGTTACGCACCAGCTGCTGCACTTGA
ACGTTTCTCAATCCACGCGGAATGCTCATCTCCGTCGGGAGAGTTTTGAG
CCTTCCCCTGGAACACGTCTGTCTTGCTTGTTTAAAATTGGTTCACC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:5838426..5842172+

>mRNA_P-fluviatile_contig1.540.1 ID=mRNA_P-fluviatile_contig1.540.1|Name=mRNA_P-fluviatile_contig1.540.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=4026bp|location=Sequence derived from alignment at P-fluviatile_contig1:5838426..5842172+ (Porterinema fluviatile SAG_2381)
ATGCAGCCAGATGACATACATTTCGCCGTCGTCTGGCCTACAGCTCATGA
TGGACCAGCGAGAAAGGCGAGACAGTGCCCGCTCTCATGTCCTGAAGACT
GCAGTATGCAGCCAGATGACATACATTTCGCCGTCGTCTGGCCTACAGCT
CATGATGGACCAGCGAGAAAGGCGAGACAGTGCCCGCTCTCATGTCCTGA
AGACTGCAGTGTAATTGTGCCGTTCCAGTGCTCGTTGGCAGAGGCGTCGA
CGACGGTCGGGTGCTTTGCGGCCTCTCACAGAAAACTTCCATGTGGAGTT
GGCGAGATCGAGACGTCGGTACTCGGTAATTGTGCCGTTCCAGTGCTCGT
TGGCAGAGGCGTCGACGACGGTCGGGTGCTTTGCGGCCTCTCACAGAAAA
CTTCCATGTGGAGTTGGCGAGATCGAGACGTCGGTACTCGGTTCATTTTG
CATGTTCAGCTCCCCTACTTCTGTGCCACCAGCGTTGATCGTGGTGGGAA
CCAAGAGCTGGAGCTGTGCCTCAAGCGTCTTCGCCTTCATCAGATGTGTC
CAGGCAGATCTTGCAAGGTTCATTTTGCATGTTCAGCTCCCCTACTTCTG
TGCCACCAGCGTTGATCGTGGTGGGAACCAAGAGCTGGAGCTGTGCCTCA
AGCGTCTTCGCCTTCATCAGATGTGTCCAGGCAGATCTTGCAAGAGACCA
GGCGGACTTCGGGTATTGGCAGCTACGGTCTCTTGCCTTGCGCACCGAGG
CGGTGGTGCCATCACCCGGCGATGAAAGCAGCAATGTGCTACCCCGGTTA
CTCGAGGAATACAACTGGGACGATGAACAGAGCGAGTCCTGGGAGGACGA
CGATATGTGGTTGGGGACGGCGGATGCTGCCGAAATTTCGAACGCAAAGG
CGGAAATGGACGGCCTGAGGAGCGAAGCGACAACAGATGCTTCCCAACTA
CAAAGAGACCAGGCGGACTTCGGGTATTGGCAGCTACGGTCTCTTGCCTT
GCGCACCGAGGCGGTGGTGCCATCACCCGGCGATGAAAGCAGCAATGTGC
TACCCCGGTTACTCGAGGAATACAACTGGGACGATGAACAGAGCGAGTCC
TGGGAGGACGACGATATGTGGTTGGGGACGGCGGATGCTGCCGAAATTTC
GAACGCAAAGGCGGAAATGGACGGCCTGAGGAGCGAAGCGACAACAGATG
CTTCCCAACTACAAAGGATCGCTGATCTGCAGGTGGAAGCTTTCGTCCCT
TCAGAGGATCAGAACTCCTCGCGTGTGCCCGCAGCACCACTGCTCGAGCA
AGCCTATCCGCAGGTGCCTCTCATCCAAGTGGACTTAGATGACGAGCCGT
CGACACGTCGGCAGCAGCAGCAGAAGCAGCAGCAGCTCCGGCAGCATGCA
TCGCCTACAGTCTTCGACTCCGGTCTGGCTGTAGTGGACCAAATGGCGTC
TTCTGTTACGGATACCGGGGGCGAGAACTCCTCGCTGATTCACTCCCAAC
ATGCACCGACGCCTGCGGCGGCGATCACCCAGACACCAGGAGCACCATCG
TGCTCGAGCGCGTTGTCGCTGGATTTGGATGTGCGAGCTGAACTATCTCC
GTTACTTGGTGTGCTATCGCCAAGCAGCGAAAAAGATGAAAGCTCGGAGT
TGCCATCGCAAGCGGAGGATCTATCAATGCACGTGGCGCCTGCGAAAGGG
CGATTCAATGCTGCGGCGGCGACTGGTGCCGAAACTCCAGCAGGTGTTGA
CGCACCAGTGGCTATTTCAGGGGATGCTGGGGAAGCAGCCGCCGCCGCCA
TCACTGCCAACGCTGAAGGCAATACCGATGTCAGCCAAGCAGCGGCAGCT
GGCACCACTGTGGCGGTTTCAGCCGCGGTGAGCGAAGACCTGGCTTACGT
TCACCAAGGTTCGGTTCTCAAGAGCTTCGCCATCACCGGGTCCGTTCTGG
TCGCGGCTTCCCATGGGGCCCGCGCTCGGTTGCGGATCACAGATAAACAC
GGGCACATTGCCAACGCAACAGCAATCTCCGTCGTGGCAGCCGAAAATAC
GGCGGGCAGCATTTCGCCCACGAGAGAGTACGTGTGCAAGGCTGGACCGG
TACAGCAAGCCGGGGCGCCGCCCAAGTTTCTTCGGGCTGTGGCGTATCGC
TGCTCCCCGGCCGTGAAAATTCTGCCCGTCAGAGTTACCTGCCGTCTGAA
TAGTGCCGGAAACAGTCTGCTCGTGTGGGCCCAAGTCATCGCCAACCCAC
AGCTGCCGCAACCACTTTGCGGAGTGTCAGTGCTGGTCAGCTTACCGTTT
TCGCCCCGCAACGAGGATCGCTGATCTGCAGGTGGAAGCTTTCGTCCCTT
CAGAGGATCAGAACTCCTCGCGTGTGCCCGCAGCACCACTGCTCGAGCAA
GCCTATCCGCAGGTGCCTCTCATCCAAGTGGACTTAGATGACGAGCCGTC
GACACGTCGGCAGCAGCAGCAGAAGCAGCAGCAGCTCCGGCAGCATGCAT
CGCCTACAGTCTTCGACTCCGGTCTGGCTGTAGTGGACCAAATGGCGTCT
TCTGTTACGGATACCGGGGGCGAGAACTCCTCGCTGATTCACTCCCAACA
TGCACCGACGCCTGCGGCGGCGATCACCCAGACACCAGGAGCACCATCGT
GCTCGAGCGCGTTGTCGCTGGATTTGGATGTGCGAGCTGAACTATCTCCG
TTACTTGGTGTGCTATCGCCAAGCAGCGAAAAAGATGAAAGCTCGGAGTT
GCCATCGCAAGCGGAGGATCTATCAATGCACGTGGCGCCTGCGAAAGGGC
GATTCAATGCTGCGGCGGCGACTGGTGCCGAAACTCCAGCAGGTGTTGAC
GCACCAGTGGCTATTTCAGGGGATGCTGGGGAAGCAGCCGCCGCCGCCAT
CACTGCCAACGCTGAAGGCAATACCGATGTCAGCCAAGCAGCGGCAGCTG
GCACCACTGTGGCGGTTTCAGCCGCGGTGAGCGAAGACCTGGCTTACGTT
CACCAAGGTTCGGTTCTCAAGAGCTTCGCCATCACCGGGTCCGTTCTGGT
CGCGGCTTCCCATGGGGCCCGCGCTCGGTTGCGGATCACAGATAAACACG
GGCACATTGCCAACGCAACAGCAATCTCCGTCGTGGCAGCCGAAAATACG
GCGGGCAGCATTTCGCCCACGAGAGAGTACGTGTGCAAGGCTGGACCGGT
ACAGCAAGCCGGGGCGCCGCCCAAGTTTCTTCGGGCTGTGGCGTATCGCT
GCTCCCCGGCCGTGAAAATTCTGCCCGTCAGAGTTACCTGCCGTCTGAAT
AGTGCCGGAAACAGTCTGCTCGTGTGGGCCCAAGTCATCGCCAACCCACA
GCTGCCGCAACCACTTTGCGGAGTGTCAGTGCTGGTCAGCTTACCGTTTT
CGCCCCGCAACGAGGGTCACGTCCAATCTGAGCCTCCAGCAACTTTGAAG
CCCGATCGCAAGATGCTGGAGTGGGTGTTACCGATGAAAATGAAGCCAGG
AGGAAAGCAGGTCATGCAAGCGCGGTTGATCATAGACGAGGGGCAAATGG
CGGGGGCGGCCATCCAGCAAACCGCCCCGGCCATGGTCAAGTGCCACCTG
CTAGATTCAACGTTCTCGTCTGTTGAGCTCGAGATAGCGGCGATGGCGGA
GGAACGGGGGCAAGTCGATGCCGGTAGAGTCATGAAGCGATGCCGTGTTC
AGTGTACGCAGCAGGTATAGGGTCACGTCCAATCTGAGCCTCCAGCAACT
TTGAAGCCCGATCGCAAGATGCTGGAGTGGGTGTTACCGATGAAAATGAA
GCCAGGAGGAAAGCAGGTCATGCAAGCGCGGTTGATCATAGACGAGGGGC
AAATGGCGGGGGCGGCCATCCAGCAAACCGCCCCGGCCATGGTCAAGTGC
CACCTGCTAGATTCAACGTTCTCGTCTGTTGAGCTCGAGATAGCGGCGAT
GGCGGAGGAACGGGGGCAAGTCGATGCCGGTAGAGTCATGAAGCGATGCC
GTGTTCAGTGTACGCAGCAGGTATAG
back to top