mRNA_P-fluviatile_contig1.499.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.499.1
Unique NamemRNA_P-fluviatile_contig1.499.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 6.360e-115
Identity = 206/294 (70.07%), Postives = 231/294 (78.57%), Query Frame = 1 
Query:   19 CRHIARVCKISSASSPRKWSSK-GSVARLHHIAAAS------HQQQHASPLPPLPHSHLP----PACSPWAGQRRLKHGAKKAGKXXXXXXXXXXXXXADGDDDGGAETLDDIAGISEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKKKKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            CRH+ARV K ++ S+PRKW     S A LH  AAA+      H +    P    P  H        C+   GQ RLKHG KK   XXXXXXX      ADG+D   AE+LDDIAGI E+KARFD+V++GL  +FQGLRGGKTDPG+LDNVKVESYGSMT LAS+AQASMKGPQLIIL+VYDP MTKA+EDAVRECGMGLNP+SEGQGQV+VPIPKPTKESREAVAKVAAKHAEKSKVV+RGIRHKI DQ+KKKKDSFPEDDVH R+KEID+CTKDAE  +ASMLEKKKAEILTV
Sbjct:    8 CRHLARVRKTATLSAPRKWIPMVESAASLHQHAAAAAGVMANHPKHRHPPFSRPPQRHQQGRQQDGCASLIGQIRLKHGGKKGNXXXXXXXXSAPSSTADGEDV--AESLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQVHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILTV 299
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BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 171 bits (432), Expect = 4.580e-44
Identity = 97/195 (49.74%), Postives = 126/195 (64.62%), Query Frame = 1 
Query:  310 TLDDIAGISEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQG----------QVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKKKKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILT 864
            T+DD A +    AR DRV+EGLK D   LRGG+ DP + D++ V SYG    L+S+AQ S KGPQL++LT YDPA   AV  AVR+ GM LNP  +G             V VPIPK + E+RE++ KVA K  EK+KV +RGIRHK+ +++KK K +F EDDVH+R KEID      E K A+ L+ KK +IL+
Sbjct:  140 TVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 334
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: R6HZC7_9PROT (Ribosome-recycling factor n=3 Tax=Azospirillum TaxID=191 RepID=R6HZC7_9PROT)

HSP 1 Score: 130 bits (326), Expect = 4.130e-31
Identity = 74/180 (41.11%), Postives = 117/180 (65.00%), Query Frame = 1 
Query:  334 SEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKK-KKDSFPEDDVHKRMK-EIDECTKDAETKVASMLEKKKAEILTV 867
            S++K+R D+ IE L+ DF  LR G+    LLD + VE+YGSMT L+ +   S+  P+ + ++++D ++ KAV+ A+RE  +GLNP S+GQ  + +PIP  ++E R+ + K+A K+AE++KV +R IR    D VKK KKD+   +D  KR + EI + T ++  K+  ML  K+ +IL V
Sbjct:    9 SDSKSRMDKTIETLRGDFGSLRAGRAHVSLLDGIMVEAYGSMTPLSQVGTVSVPDPRTLSISIWDRSLAKAVDKALRESDLGLNPASDGQ-LIRIPIPPLSEERRKELVKIAGKYAEQNKVAIRNIRRDALDDVKKLKKDNQISEDEEKRFENEIQKLTDESIKKIEEMLSAKEKDILQV 187
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A840XNP9_9PROT (Ribosome-recycling factor n=12 Tax=Roseomonas TaxID=125216 RepID=A0A840XNP9_9PROT)

HSP 1 Score: 129 bits (324), Expect = 7.970e-31
Identity = 75/175 (42.86%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:  349 RFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKK--KKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            R D  +E LK +F GLR G+  P LL+ ++VE+YGSMT L  +A  S+ GP L+ + V+D A+TK VE A+RE  +GLNP +EGQ  + VP+P  T E R  +AK AA++AE+++V +RG+R    +QVK   KK    ED+  +   EI + T     +V + L +K+ +I TV
Sbjct:   15 RMDGAMETLKKEFAGLRTGRASPALLEPIRVEAYGSMTPLNQVANISVAGPGLLSVQVWDKALTKHVESAIREANLGLNPQAEGQ-VIRVPLPPLTTERRNELAKAAARYAEQTRVAIRGVRRDGMEQVKAWVKKHETSEDEAKRAEDEIQKLTDQYVKQVDAALAEKEKDIRTV 188
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BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: UPI001BA79AAC (ribosome recycling factor n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BA79AAC)

HSP 1 Score: 129 bits (323), Expect = 1.090e-30
Identity = 76/175 (43.43%), Postives = 108/175 (61.71%), Query Frame = 1 
Query:  349 RFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKK--KKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            R D  IE LK +FQGLR G+  P LL+ V+VE+YGS+T L  +A  S+ GP L+ + V+D  +TKAVE A+RE  +GLNP +EGQ  + VP+P  T E R  + K AA++AE ++V +RG+R    +Q K   KK    ED+V +   EI + T     +V + L  K+ +I TV
Sbjct:   15 RMDGAIETLKKEFQGLRTGRASPALLEPVRVEAYGSVTPLNQVANVSIAGPGLLSVQVWDKGLTKAVESAIREANLGLNPQAEGQ-VIRVPLPPLTAERRNELVKAAARYAESTRVAIRGVRRDGMEQAKGWIKKHEASEDEVKQAETEIQKLTDQYVKQVDASLVDKEKDIRTV 188
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A4R0Y5H3_9PROT (Ribosome-recycling factor n=4 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R0Y5H3_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.150e-30
Identity = 73/175 (41.71%), Postives = 111/175 (63.43%), Query Frame = 1 
Query:  349 RFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVK--KKKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            R D  +E LK +F GLR G+  P LL+ ++VE+YGS   LA +A  S+ GP ++ + V+D ++TKAVE A+R+ G+GLNP SEGQ  + V +P  T++ R  +AK AAK++E +KV +RG+R    +Q++  KKK    EDD  +   E+ + T D   K+   L +K+ +I TV
Sbjct:   17 RMDGALETLKKEFAGLRTGRASPSLLEPIRVEAYGSNQPLAQVANVSVAGPSMLQVQVWDRSVTKAVEIAIRDSGLGLNPQSEGQ-TIRVMLPPLTEQRRNELAKTAAKYSEGAKVAIRGVRRDGMEQIQGWKKKSEIGEDDAKRWSDEVQKLTDDYVKKIDVSLAEKEKDIKTV 190
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A8J6JSD3_9PROT (Ribosome-recycling factor n=1 Tax=Rubritepida sp. TaxID=2497596 RepID=A0A8J6JSD3_9PROT)

HSP 1 Score: 128 bits (322), Expect = 1.580e-30
Identity = 72/179 (40.22%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:  337 EAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVK--KKKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            + K R D  +E LK +FQGLR G+  P LL+ ++VE YG+++ L  +A  S+ GP ++ + V+D   TKAVE A+R+ G+GLNP +EGQ  + VP+P  T E R  ++K A+K+AE +K+ +RG+R    +QV+  KKK    EDD  +  KE+   T +   K+ ++  +K  +I TV
Sbjct:   13 DMKRRMDSTMETLKKEFQGLRTGRASPNLLEPIRVEIYGAVSPLNQVANVSVGGPGMLHVQVFDRTQTKAVEIAIRDSGLGLNPQAEGQ-TIRVPLPPLTAERRNDLSKQASKYAEGAKIAVRGVRRDGMEQVQAWKKKSDISEDDAKRAEKEMQTLTDEYVKKIDTVFAEKDKDIRTV 190
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 129 bits (324), Expect = 8.000e-30
Identity = 69/180 (38.33%), Postives = 114/180 (63.33%), Query Frame = 1 
Query:  325 AGISEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKKKKDSFPEDDVHKRMKEIDECTKDAETK-VASMLEKKKAEIL 861
            A + +   +  R I+ L  D + LR G+ DP + D+++V++YG    L+++A  + +GPQL+++ VYDP +  AV+ A+RECGMGLNP +   G ++VP+PK +KE RE +A++A +  EK+K  +R  R    D+ KK     PED+  + +KEID    DA+ K V+ +++ K+ E+L
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQALEGGALSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKKA--GLPEDESKRLVKEIDALC-DAKLKAVSDLIDGKQKELL 271
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: UPI001A067563 (Ribosome recycling factor n=1 Tax=Acetobacteraceae bacterium H6797 TaxID=2571211 RepID=UPI001A067563)

HSP 1 Score: 125 bits (314), Expect = 1.840e-29
Identity = 74/186 (39.78%), Postives = 113/186 (60.75%), Query Frame = 1 
Query:  319 DIAGI-SEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVK--KKKDSFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV 867
            DIA + S+   R D  +E LK +F GLR G+  P LL+ ++VE+YGS   L+ +A  S+ GP ++ + V+D ++TKAVE A+R+ G+GLNP +EG   + VP+P  T E R  +AK AAK+AE +KV  RG+R    + +K  +KK    +DD  K   E+ + T      + + L +K+ +I TV
Sbjct:    4 DIAALKSDLSRRMDGALETLKKEFSGLRTGRASPALLEPIRVEAYGSNQPLSQVANVSVSGPSMLSVQVWDKSVTKAVEVAIRDSGLGLNPQAEGT-VIRVPLPPLTTERRNELAKTAAKYAEAAKVAARGVRRDGMETIKGWEKKSEVGKDDAAKWSDEVQKLTDATIKAIDAALAEKEKDIKTV 188
[Close]
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Match: A0A1Q6T2D3_9PROT (Ribosome-recycling factor n=2 Tax=Acetobacter TaxID=434 RepID=A0A1Q6T2D3_9PROT)

HSP 1 Score: 125 bits (313), Expect = 2.450e-29
Identity = 71/180 (39.44%), Postives = 116/180 (64.44%), Query Frame = 1 
Query:  334 SEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESYGSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEGQGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKK-KKDSFPEDDVHKRM-KEIDECTKDAETKVASMLEKKKAEILTV 867
            ++   R ++ +E L++DF GLR G+    LLDN+ VE+YG+ T +A +   S+   + + ++V+D  + KAVE A+RE  +GLNP S+GQ  + +PIP  ++E R+ + KVA K+AE++K+ +R IR    D+V+K KKD+   +D  KR   EI + T D+  K+  ML++K+ +IL V
Sbjct:    9 TDTTERMEKTLETLRNDFGGLRAGRAHASLLDNIMVEAYGTPTPIAQVGTVSVPDARTLSVSVWDKGIAKAVEKALRESDLGLNPVSDGQ-LIRIPIPPLSEERRKELVKVAGKYAEQNKIAIRNIRRDALDEVRKLKKDNLISEDDEKRYGTEIQKLTDDSIKKIDDMLDQKEKDILQV 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Z6_9PHAE6.360e-11570.07RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CM55_9STRA4.580e-4449.74Ribosome recycling factor domain-containing protei... [more]
R6HZC7_9PROT4.130e-3141.11Ribosome-recycling factor n=3 Tax=Azospirillum Tax... [more]
A0A840XNP9_9PROT7.970e-3142.86Ribosome-recycling factor n=12 Tax=Roseomonas TaxI... [more]
UPI001BA79AAC1.090e-3043.43ribosome recycling factor n=1 Tax=Roseomonas terra... [more]
A0A4R0Y5H3_9PROT1.150e-3041.71Ribosome-recycling factor n=4 Tax=Acetobacteraceae... [more]
A0A8J6JSD3_9PROT1.580e-3040.22Ribosome-recycling factor n=1 Tax=Rubritepida sp. ... [more]
A0A6V1LRG3_HETAK8.000e-3038.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001A0675631.840e-2939.78Ribosome recycling factor n=1 Tax=Acetobacteraceae... [more]
A0A1Q6T2D3_9PROT2.450e-2939.44Ribosome-recycling factor n=2 Tax=Acetobacter TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5515637..5521175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.2
Seed ortholog evalue5e-82
Seed eggNOG ortholog2880.D7G7A5
Preferred nameRRF1
KEGG koko:K02838,ko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032543,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosome recycling factor
Ec32 orthologEc-04_003560.1
Exons7
Model size2008
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.499.1prot_P-fluviatile_contig1.499.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5515637..5520037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.9990761-CDS-P-fluviatile_contig1:5515636..55158681622815344.9990761-CDS-P-fluviatile_contig1:5515636..5515868Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5515637..5515868 +
1693561558.864161-CDS-P-fluviatile_contig1:5515636..55158681693561558.864161-CDS-P-fluviatile_contig1:5515636..5515868Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5515637..5515868 +
1622815345.0114248-CDS-P-fluviatile_contig1:5516491..55166281622815345.0114248-CDS-P-fluviatile_contig1:5516491..5516628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5516492..5516628 +
1693561558.8765345-CDS-P-fluviatile_contig1:5516491..55166281693561558.8765345-CDS-P-fluviatile_contig1:5516491..5516628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5516492..5516628 +
1622815345.020403-CDS-P-fluviatile_contig1:5517208..55172571622815345.020403-CDS-P-fluviatile_contig1:5517208..5517257Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5517209..5517257 +
1693561558.8857775-CDS-P-fluviatile_contig1:5517208..55172571693561558.8857775-CDS-P-fluviatile_contig1:5517208..5517257Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5517209..5517257 +
1622815345.029835-CDS-P-fluviatile_contig1:5517663..55177791622815345.029835-CDS-P-fluviatile_contig1:5517663..5517779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5517664..5517779 +
1693561558.894866-CDS-P-fluviatile_contig1:5517663..55177791693561558.894866-CDS-P-fluviatile_contig1:5517663..5517779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5517664..5517779 +
1622815345.0681944-CDS-P-fluviatile_contig1:5518365..55185181622815345.0681944-CDS-P-fluviatile_contig1:5518365..5518518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5518366..5518518 +
1693561558.9014688-CDS-P-fluviatile_contig1:5518365..55185181693561558.9014688-CDS-P-fluviatile_contig1:5518365..5518518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5518366..5518518 +
1622815345.079439-CDS-P-fluviatile_contig1:5519056..55191581622815345.079439-CDS-P-fluviatile_contig1:5519056..5519158Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5519057..5519158 +
1693561558.9085867-CDS-P-fluviatile_contig1:5519056..55191581693561558.9085867-CDS-P-fluviatile_contig1:5519056..5519158Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5519057..5519158 +
1622815345.0943239-CDS-P-fluviatile_contig1:5519956..55200371622815345.0943239-CDS-P-fluviatile_contig1:5519956..5520037Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5519957..5520037 +
1693561558.9188595-CDS-P-fluviatile_contig1:5519956..55200371693561558.9188595-CDS-P-fluviatile_contig1:5519956..5520037Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5519957..5520037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.108175-UTR-P-fluviatile_contig1:5520037..55211751622815345.108175-UTR-P-fluviatile_contig1:5520037..5521175Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5520038..5521175 +
1693561558.926809-UTR-P-fluviatile_contig1:5520037..55211751693561558.926809-UTR-P-fluviatile_contig1:5520037..5521175Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5520038..5521175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.499.1

>prot_P-fluviatile_contig1.499.1 ID=prot_P-fluviatile_contig1.499.1|Name=mRNA_P-fluviatile_contig1.499.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=290bp
MAARSPCRHIARVCKISSASSPRKWSSKGSVARLHHIAAASHQQQHASPL
PPLPHSHLPPACSPWAGQRRLKHGAKKAGKKGGKGGKGAASAAADGDDDG
GAETLDDIAGISEAKARFDRVIEGLKHDFQGLRGGKTDPGLLDNVKVESY
GSMTTLASLAQASMKGPQLIILTVYDPAMTKAVEDAVRECGMGLNPHSEG
QGQVNVPIPKPTKESREAVAKVAAKHAEKSKVVLRGIRHKIQDQVKKKKD
SFPEDDVHKRMKEIDECTKDAETKVASMLEKKKAEILTV*
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mRNA from alignment at P-fluviatile_contig1:5515637..5521175+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.499.1 ID=mRNA_P-fluviatile_contig1.499.1|Name=mRNA_P-fluviatile_contig1.499.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5539bp|location=Sequence derived from alignment at P-fluviatile_contig1:5515637..5521175+ (Porterinema fluviatile SAG_2381)
ATGGCGGCCAGAAGTCCGTGCCGTCACATCGCAAGGGTGTGCAAGATCTC
CTCCGCGAGTTCGCCGCGGAAGTGGTCGTCAAAGGGGTCTGTGGCCAGGC
TTCACCACATCGCTGCAGCAAGTCACCAGCAGCAACATGCGTCCCCTCTG
CCGCCGCTACCTCACAGCCACCTACCGCCGGCCTGCTCTCCCTGGGCTGG
ACAAAGACGACTGAAGCACGGGGCGAAGAAAGGTGTGTCTCCTGCAGCTT
CGTTGCGCGAACATTGGCGGAGTCTATCATCCCGATCTGGTTTCGTTTAG
CGCAACGTTCCGTTCGGTTTCCAGCAGCAGTCGAGGAGTCGGTACCCACA
CCGCTGTGTGAAGTCCTGTGTGCTGGAGAAAGGATACATTCGGCCGGCCT
TCTCCAGGGGATCGCACGCTGTCCATCGGTAGATGCCCGAACCTTCCTCC
CGACTGCGTCCGCATCCGGTGGAATTGGTCCATGTGCAGCCGCTGGTTGG
CATTCTTCGAATCAAGATACCCGTCTGCCTCTTGGGAGATAATCGATCAC
CACCGAACGATGTCGTCTGCAGAGTGGACGGCAAACAACAAGAACAACAC
CAAAATGTCATGTGTTTTCCCCGTGACAGCACCCCTCTCCAACTCCACCC
ACGCGGGACAATTGGCTCCGTGGTGCACAGCAGCAGCAAGTGTGTATTGT
GCGCATGCGGGCTTTGCCGGCTCTTTTGGGTCTTTCGAAAACGTCACCAC
GCATCTCCGTCGTTCGTGGAGCGACCAGCAACAGACACGAAGACCGAGAA
GCCAACATACGTACGGCTCACACCGTTGCGATGTAACATGAATCGAAATT
CACAGCGGGCAAGAAAGGGGGCAAAGGGGGCAAGGGGGCCGCGAGCGCGG
CGGCCGACGGTGACGACGACGGCGGTGCGGAGACCCTGGACGATATCGCC
GGAATCTCGGAGGCGAAGGCTCGCTTCGACAGAGTCATCGAGGTCCGTTC
GCTCGTAACGATGCAAATTTAATGTAAATTGTAATTTGTTTCCGAAAGGT
TTTCGGAGAGCGTACGTGTGAAGGATTTCCGTTTTGAGGGGGGATTGAGA
TCGCGTCGTGTCCCCCCTCCCTTCCCTCTCCCCGTCCCACACCGGTGACC
GTTATTTTTCATGTCGTGGCAACTAGTGGTCGCTATTTCCGATGGCATCG
CAACGGACGGCGCCGTCCATAATCAGACGGGGTGATGGAATGTTTCGAGA
AAAAAGCGAAAACGCTCGCGCGAGAGAGAGGGAGAGAGGGGGAGAATGGA
TGCTGCCCCTTCCCATGTCGACCCTCTTATTGCGTCAAGCTCTGGTGTCC
CTTGGGATTCGTCGCTCTGTACCAACAATGTGGTTGTATTTCCGCTTGTT
TCGGCCAGACCTCGCGCCGTAGTGTTTTTGCAATTCGTTGTTATTTGCTC
ATGATCGCATATATATGTTGCGTATGGGGCTTGGCGCACGCCGGCGGCGG
CGGCGGCTGCGCGGCTATGGTGGCGCTGGATGTGGGGTTATGGGCTGGTT
TATTGTCCGGTGCACGGCGTAGGGCCTGAAGCACGACTTTCAGGGGCTGC
GAGGAGGAAAGACAGACCCTGGTAAGTGCACGTGCCTGTGTTCCATAGAT
TTATCATCGGGATTTTGCCGCGCATCCGTGGCCGTGCTTGGTGCTGTGGG
CGAAATGCTTCGCGCGGTGGCGGGAAAAATATGATAGGTATGGTTGACCG
GCGCGCGAGAGGCGAAGCAGGGAAGGCAGGGTGCAAGTCAGGAACTCAGG
GCGGAACAAATGATGGCTAAAGTGTGTGATGGCTACAAGACTCTTCAGAG
AGTGCCCGCCCAAACCGCGGCCGAGTCCTTCTGTGTCGGCAGCTCACAGA
AACAGCAGCCGTTCCGTCCGTGAAGGAAAAACCGATGGAAAAGTGACGAA
GGCAAGGCCGACAAAAGAGACCCACCCCCGGCCCCGCCTTCCCTCTTGCT
GCATTCCAAACGGCCGCTCACAAAAAGGGTTGCTGGACAACGTAAAGGTT
GAGTCGTACGGATCGATGACGACGCTCGCCTCATTGGCTCAGGCGTCCAT
GAAGGGACCCCAGCTCATTATTCTCACCGTCTACGACCCCGCGGTGAGTC
TTGTGTGCTCATGTACGACAGTCGTCGTGCGATGAGTCGAGCCCGATCGT
TCCGCGATGTGTTTGTGTTATGCCCTTGCTTCGTCCTTACTGACTGGCCA
GCGAGTGACACAATATCGCAATTTATATGGCAAAATGCGACAACGTCAAG
ATCACGCATGAATCCTCGAGCCTCAGCGCCGTTGATGCGGAACCTTTCGA
TTCTGCGAAAACGCGGTTGGCAAGTGGGATGTCGCTGCTGCGAACGGCTG
ATCTCCTCGGGTGTGTTCGCACGCGCTCGCGAGTGCAGCACGTCGTTCGT
GGCGGTTGCCGCCGGCTTTGGCTTCAGTACGTTTATCGCTGTTTCCGGCG
AAGGAGCGGTAACAAAATGAGAACGGATCAGCAGCAGTAGCAGCAGCAAG
ACGAGTACAAACCATGAACTCGTGATCATGTCGAGAAAAAACTAAATGTC
TGATGAGAGCCAACCGGTTTTCAGCCCGGTCAGTTGAACATCGCCCTCGG
TCTTCACAAGTGTTGGCAGCGCATGACCTTTTTGCTTCGTGTGCCTCTGC
TTTTTTTTGTTCTGTTACCATTCGGGCAGATGACCAAGGCAGTGGAGGAC
GCCGTCCGGGAGTGCGGCATGGGCCTTAACCCCCACTCGGAGGGCCAGGG
CCAGGTGAACGTGCCGATCCCGAAGCCCACGAAGGAATCCAGGGAAGCCG
TGGCGAAGGTGGCCGCCAAACACGCGGAAAAGGTGTGTAGGAAGTTTCGT
TTGGTGTCTGCTTGAAACGAAACTCACGAAATATCCTCCCAGCAGCGTCC
CAAAAAATAGCGGGTGGCTCTCTTGCCAATGCAAGAGCGCAGAATCGCCC
GCTCGGTGCTGGACAAGGGAGCCGTTGGTGCGTATCATGGATGGCCGGGT
GTGAATCAATGGCGAACCAAGTCCCTATCGCTTCGCGCGGGACGACTTGA
CGGCAGGAATTACGTGTAGTGCTATCTGGCCTTGCCTGGGCTGGTCGGGG
CTGGGCTCGGCTGGCTTTCCGCGACCTTGTATGCTCTCCGATATAATCGC
TGGGTTTTTCGTGTTCGCCCCAAGAGCATGCCTGCACGAGTAATAGGCTA
TGTGTATCTGCATCCGCGTCATTCTCGACCCTCTCACGCGTCCGTCTCCT
TGCTTTTGCTTTTTCCCCAGACCACTTTACAAGGACTTGGGCATCCGTGC
TTGTTCATCGATTGCTGCCGCTCCTTTCCCGTTCGCCCATCCGCCCTGTC
CATACAAAAAACAACGCCAGTCTAAGGTCGTGCTGCGAGGTATTCGGCAC
AAGATTCAGGACCAAGTCAAGAAGAAGAAGGATTCTTTTCCCGAGGACGA
CGTCCACAAGAGGATGAAGGAGGTGTGTGGCGTAGGCAATCTCTGCCGTT
AAGCCATTTCGATTTTGTCTCCACGTAGGTGACCTCTCGTGACGGAATAT
TTCGCTCCGCATCCTGCTCATGGTGCTGTCGGCGGTGTTCCCAACAACTT
TTGGTTCACGTTTTTGACTTGCTTTCTGCCTTTCGTGCCTTCTTGCTCTC
AACTCACAGTTTCACTTGGGTCGCCTCTGTGTCTTTCCGGTCGGTGGGGT
TGTTTGCTCTCCTCGTGGTTCAGCCGGGTAGCCTGCCACCTCCCGCTGTG
TTCAGGATCTAGCCCCACGCCAGAGGATTTTGCTAGTGCACCTCCGTTGC
ACTTTAATACATTGCCGTACTCATGATATTCAAACCCGTTGCAGGCGCCG
GCGCGGAGACAACAAGATCACTTCAGGCTTTTTCAATCATAAATGTGATA
GCAATTGAGGTCCGGTAATCCCCAGCAGGAAGGGTGCACGTTGAACGCTC
TCTCTAGGCCACTACAGGATGGTCTGATGTTCACATCAGGGGAGGGTACT
ATTCTGGCACTCCTTGGGATTCGAATAGAGATTGAACCCGATACCTCTCG
TTGCCTTCCCCGTGCTTCCTCCTCGCGACTGCTCCCCCCGCTTCCTCTCA
CGCTCGCCCCCATTGTTTCATTTATGCCGGTTGCCGTCGTCTCTCTGGTT
GTTTTGAACGCTGGCGCGCCCTTGCCGACCGCCCCTTGGGCCTTGCACGT
CGGCGTCACGCCAACGCCGCTGCCACCACCGCCGTCGCCGCCACTGCCGC
CGCCCCCACCGCCGTTACAGATCGACGAGTGCACCAAGGATGCGGAGACC
AAAGTCGCCAGCATGCTGGAGAAGAAGAAGGCCGAAATCCTCACCGTCTA
GATAATAATACATCCTAGTTTTAGCTGTGTAAAGAGCCTGGGCGGGCGGT
GCTGTGCTGTGCTGTTCGTATAAGCCGTCGCGCTTGTATTTCAGAACATC
ACCTCTCTTTCTGTTCCAATGACTCTGTCCGTGTGCCGGCTTCCCTGGGA
TGAATTCGAAGAGCTTTTTCTTGCCGCTGCGTACGCCACTGGGCGAACTT
GGGGGGGTGGCGAGGAGTGGGACGTGTGTTGTGTGTGAAATATCAAGAGG
ATAGTTTATTCCCTCCACGTTTACTCGCTGGGGTTGAATGTGTGACGATA
TAGCTCGTGTGTCATTAGAATGATGGAAACTTGCTGCATGCTGAACATCG
CTTGCGCGCCCGAGGATCCGCTGCGGTGTAGCTGCTGGCGTGTCGCGAAA
CGGGAAGCTTGGAGTGGCACTCATTCTGACGATGTGCGATCCTCATTGAG
CAGGAGGGGTACGATTTCGGAAAGGCGGTGGTAATACCTAGGGATGCTAC
GGTCTATGTCCCAGGCGACCCTGTACAAGTAGACCTCGCCAGTTGACTTG
ATTTTTGTAGATTTCAAGTACATCATGCACCGGCGAGTAGCGAGGAAAAC
TAGAGGCTTGCGCTTGTACTTTTTCTCGGAGGGGAGGTGAACGGCTGCTG
TTCGCCGGCTCCGGCATGTACGCGCGCGCACGGTTATTAATTGCCCCGAA
GCGCATCAATACTCGCACAATATCAGGTTTGGCCAAGACAAGCATTGTTG
CTGCTCTTTCTCGAGGATCGCCCGACGGGACAGGATCGTCACCTTAATGC
ATGTTTGTGTGTCGCTTATTGCTGTTTGGATCTTCGGGCGTGAAATATCA
GCTGCACGCCCTCGAATCTGCTGCTTACGGTGGACGCCCCACTTCGCCTT
CTGACATTTTTTATCGAGTTTGCGGTCAGTATTGGCACGGGATGAGCAGC
TTAAAATGCACGCTTGATCTTCTGTGTCTAGAGGGCGTCGAATCGTTGAG
CTTTTCAGCGATGCTCAAAGCTGAAGGTTTGTTTGAAATGTAAATAATGA
ATCAGAGCAAGAGAGAAGAATATCGAAGCCCTCGTGTAGCTTCCTACGTC
GGTCTAAATTCTCCTCCGACTAGGTGTCTTGTAATAACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5515637..5521175+

>mRNA_P-fluviatile_contig1.499.1 ID=mRNA_P-fluviatile_contig1.499.1|Name=mRNA_P-fluviatile_contig1.499.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1740bp|location=Sequence derived from alignment at P-fluviatile_contig1:5515637..5521175+ (Porterinema fluviatile SAG_2381)
ATGGCGGCCAGAAGTCCGTGCCGTCACATCGCAAGGGTGTGCAAGATCTC
CTCCGCGAGTTCGCCGCGGAAGTGGTCGTCAAAGGGGTCTGTGGCCAGGC
TTCACCACATCGCTGCAGCAAGTCACCAGCAGCAACATGCGTCCCCTCTG
CCGCCGCTACCTCACAGCCACCTACCGCCGGCCTGCTCTCCCTGGGCTGG
ACAAAGACGACTGAAGCACGGGGCGAAGAAAGATGGCGGCCAGAAGTCCG
TGCCGTCACATCGCAAGGGTGTGCAAGATCTCCTCCGCGAGTTCGCCGCG
GAAGTGGTCGTCAAAGGGGTCTGTGGCCAGGCTTCACCACATCGCTGCAG
CAAGTCACCAGCAGCAACATGCGTCCCCTCTGCCGCCGCTACCTCACAGC
CACCTACCGCCGGCCTGCTCTCCCTGGGCTGGACAAAGACGACTGAAGCA
CGGGGCGAAGAAAGCGGGCAAGAAAGGGGGCAAAGGGGGCAAGGGGGCCG
CGAGCGCGGCGGCCGACGGTGACGACGACGGCGGTGCGGAGACCCTGGAC
GATATCGCCGGAATCTCGGAGGCGAAGGCTCGCTTCGACAGAGTCATCGA
GCGGGCAAGAAAGGGGGCAAAGGGGGCAAGGGGGCCGCGAGCGCGGCGGC
CGACGGTGACGACGACGGCGGTGCGGAGACCCTGGACGATATCGCCGGAA
TCTCGGAGGCGAAGGCTCGCTTCGACAGAGTCATCGAGGGCCTGAAGCAC
GACTTTCAGGGGCTGCGAGGAGGAAAGACAGACCCTGGGCCTGAAGCACG
ACTTTCAGGGGCTGCGAGGAGGAAAGACAGACCCTGGGTTGCTGGACAAC
GTAAAGGTTGAGTCGTACGGATCGATGACGACGCTCGCCTCATTGGCTCA
GGCGTCCATGAAGGGACCCCAGCTCATTATTCTCACCGTCTACGACCCCG
CGGGTTGCTGGACAACGTAAAGGTTGAGTCGTACGGATCGATGACGACGC
TCGCCTCATTGGCTCAGGCGTCCATGAAGGGACCCCAGCTCATTATTCTC
ACCGTCTACGACCCCGCGATGACCAAGGCAGTGGAGGACGCCGTCCGGGA
GTGCGGCATGGGCCTTAACCCCCACTCGGAGGGCCAGGGCCAGGTGAACG
TGCCGATCCCGAAGCCCACGAAGGAATCCAGGGAAGCCGTGGCGAAGGTG
GCCGCCAAACACGCGGAAAAGATGACCAAGGCAGTGGAGGACGCCGTCCG
GGAGTGCGGCATGGGCCTTAACCCCCACTCGGAGGGCCAGGGCCAGGTGA
ACGTGCCGATCCCGAAGCCCACGAAGGAATCCAGGGAAGCCGTGGCGAAG
GTGGCCGCCAAACACGCGGAAAAGTCTAAGGTCGTGCTGCGAGGTATTCG
GCACAAGATTCAGGACCAAGTCAAGAAGAAGAAGGATTCTTTTCCCGAGG
ACGACGTCCACAAGAGGATGAAGGAGTCTAAGGTCGTGCTGCGAGGTATT
CGGCACAAGATTCAGGACCAAGTCAAGAAGAAGAAGGATTCTTTTCCCGA
GGACGACGTCCACAAGAGGATGAAGGAGATCGACGAGTGCACCAAGGATG
CGGAGACCAAAGTCGCCAGCATGCTGGAGAAGAAGAAGGCCGAAATCCTC
ACCGTCTAGATCGACGAGTGCACCAAGGATGCGGAGACCAAAGTCGCCAG
CATGCTGGAGAAGAAGAAGGCCGAAATCCTCACCGTCTAG
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