mRNA_P-fluviatile_contig1.483.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.483.1
Unique NamemRNA_P-fluviatile_contig1.483.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Match: D8LNH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.330e-40
Identity = 98/148 (66.22%), Postives = 105/148 (70.95%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGAQXXXXXXXXXXXXXXXXTAAQGRTGYGRVASLHDAPHASTASNGGVSRGSXXXXXXXXXGVAGPLDKLAEMIGVQGRFVTIPGALGVQENQVSLLHLMIAATVVLFGGWKAAAVMVFAYVITNQKGRAR 444
            VRIINGEIVSDDDPRVAG Q   XXXXXXXXX       QGR GYG VASL D P  + A+ GG  RG             GPLDKLAEMIGVQGR VTIPGALGVQE QV  ++LMIAA VVLFGGWK AA++VFAYV+ NQK R R
Sbjct:    2 VRIINGEIVSDDDPRVAGPQRRGXXXXXXXXX-------QGRAGYGHVASLLDPPSTAEATGGGA-RGPAAGGRGAGAST-GPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFVYLMIAALVVLFGGWKVAALIVFAYVLINQKPRGR 140
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BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Match: A0A836CLX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.940e-11
Identity = 50/143 (34.97%), Postives = 68/143 (47.55%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGAQXXXXXXXXXXXXXXXXTAAQGRTGYGRVASLHDAPHASTASNGGVSRGSXXXXXXXXXGVAGPLDKLAEMIGVQGRFVTIPGALGVQENQVSLLHLMIAATVVLFGGWKAAAVMVFAYVITNQ 429
            VRIINGEIV D+DPR+                    T A+G  G G  A+    P  S A+  G +  S             PL +LA+M+GV+G+ +TIP   GV    V ++HL++ A V L  GWKA A     YV+  +
Sbjct:    1 VRIINGEIVQDNDPRLR------------QRTQSAATTARGGFGAGDGAAR---PTPSAAAMAGGAAES-------------PLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 115
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BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Match: G4YYH3_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4YYH3_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-9
Identity = 51/144 (35.42%), Postives = 69/144 (47.92%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGAQXXXXXXXXXXXXXXXXTAAQGRTGYGRVASLHDAPHASTASNGGVSRGSXXXXXXXXXGVAGPLDKLAEMIGVQGRFVTIPGALGVQENQVSLLHLMIAATVVLFGGWKAAAVMVFAYVITNQK 432
            V IINGEIV DDDPRV   Q                  +Q +  +G V             +GG +       XXXXX  A PL  LA  +G++G  VTIP  LG+    V  +HL++AA +  F GW+A   + FAY ++ Q+
Sbjct:    2 VHIINGEIVQDDDPRVRARQQPQQ--------------SQPQRRFGSV-------------HGGAAAAPTAAGXXXXXXXASPLQGLARQVGLEGT-VTIPAVLGLPARPVQKIHLVVAALLTAFFGWRALVFLAFAYFLSTQQ 117
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BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Match: A0A0M0JAQ1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAQ1_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-7
Identity = 43/142 (30.28%), Postives = 62/142 (43.66%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGAQXXXXXXXXXXXXXXXXTAAQGRTGYGRVASLHDAPHASTASNGGVSRGSXXXXXXXXXGVAGPLDKLAEMIGVQGRFVTIPGALGVQENQVSLLHLMIAATVVLFGGWKAAAVMVFAYVITN 426
            V IINGEIV D+DPR    +                 AA    G   + +LH    A     GG                 GPLD++AE +G++G+ V IP    +   +V L+H++I A + LF GW   AV    +V++ 
Sbjct:    2 VVIINGEIVPDNDPRAIARRNPKP-------------AASTAPGQSNIRNLHGGGGAGMPRMGGAGGAGP-----------GPLDQVAEALGIRGQSVEIPAIWRLPARRVQLIHIVILALLALFFGWHILAVAAVLHVVSG 119
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BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Match: A0A7S2C2E5_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2E5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.980e-6
Identity = 45/145 (31.03%), Postives = 61/145 (42.07%), Query Frame = 1 
Query:    1 VRIINGEIVSDDDPRVAGAQXXXXXXXXXXXXXXXXTAAQGRTGYGRVASLHDAPHASTASNGGVSRGSXXXXXXXXXGVAGPLDK----LAEMIGVQGRFVTIPGALGVQENQVSLLHLMIAATV-VLFGGWKAAAVMVFAYVI 420
            V+IINGEIV DDDPR    +                  + GR           A  +S   NGG                  PL K    LA+ + ++GR VTIP   GV +++V L++L+I   V VL   W+  AV V  Y +
Sbjct:    7 VKIINGEIVQDDDPRAQRLRQRASAAQRPIPTSVNFGGSGGR-----------AHSSSRGGNGGFGGTPPSTPVASDPAQQNPLMKIVQQLAKFLNIEGRLVTIPAVFGVPQSEVELIYLIIIGVVSVLSKSWRIPAVAVVVYFV 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LNH2_ECTSI5.330e-4066.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLX7_9STRA3.940e-1134.97Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
G4YYH3_PHYSP1.510e-935.42Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A0M0JAQ1_9EUKA1.580e-730.28Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S2C2E5_9STRA5.980e-631.03Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5325722..5329270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size955
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.483.1prot_P-fluviatile_contig1.483.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5326230..5328065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.9688506-UTR-P-fluviatile_contig1:5325721..53262291622815341.9688506-UTR-P-fluviatile_contig1:5325721..5326229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5325722..5326229 -
1693561554.70141-UTR-P-fluviatile_contig1:5325721..53262291693561554.70141-UTR-P-fluviatile_contig1:5325721..5326229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5325722..5326229 -
1622815342.0000918-UTR-P-fluviatile_contig1:5328065..53281351622815342.0000918-UTR-P-fluviatile_contig1:5328065..5328135Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5328066..5328135 -
1693561554.729057-UTR-P-fluviatile_contig1:5328065..53281351693561554.729057-UTR-P-fluviatile_contig1:5328065..5328135Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5328066..5328135 -
1622815342.01191-UTR-P-fluviatile_contig1:5329073..53292701622815342.01191-UTR-P-fluviatile_contig1:5329073..5329270Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5329074..5329270 -
1693561554.7363014-UTR-P-fluviatile_contig1:5329073..53292701693561554.7363014-UTR-P-fluviatile_contig1:5329073..5329270Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 5329074..5329270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815341.9778376-CDS-P-fluviatile_contig1:5326229..53263101622815341.9778376-CDS-P-fluviatile_contig1:5326229..5326310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5326230..5326310 -
1693561554.7107863-CDS-P-fluviatile_contig1:5326229..53263101693561554.7107863-CDS-P-fluviatile_contig1:5326229..5326310Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5326230..5326310 -
1622815341.990176-CDS-P-fluviatile_contig1:5327966..53280651622815341.990176-CDS-P-fluviatile_contig1:5327966..5328065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5327967..5328065 -
1693561554.719469-CDS-P-fluviatile_contig1:5327966..53280651693561554.719469-CDS-P-fluviatile_contig1:5327966..5328065Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5327967..5328065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.483.1

>prot_P-fluviatile_contig1.483.1 ID=prot_P-fluviatile_contig1.483.1|Name=mRNA_P-fluviatile_contig1.483.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=60bp
MIGVQGRFVTIPGALGVQENQVSLLHLMIAATVVLFGGWKAAAVMVFAYV
ITNQKGRAR*
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mRNA from alignment at P-fluviatile_contig1:5325722..5329270-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.483.1 ID=mRNA_P-fluviatile_contig1.483.1|Name=mRNA_P-fluviatile_contig1.483.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3549bp|location=Sequence derived from alignment at P-fluviatile_contig1:5325722..5329270- (Porterinema fluviatile SAG_2381)
GTGCGGATAATTAATGGCGAAATCGTCAGCGATGACGACCCGCGTGTCGC
CGGAGCACAGAGGCGGTCATCGGGCGGCGGCGGCGGTGGTGGCTTCGGTG
GTGGTGGGACGGCGGCACAAGGCAGGACAGGATACGGGCGCGTGGCGTCG
CTTCACGATGCTCCACACGCGTCAACAGCGAGCAACGGGGGTGTAAGGTA
AGGCAAGTGCCAAAACCCCCTCGCTGAGATTCGATACCCGCTAACAACAA
AAGGAAGACGGATTCGCCAGGAGAAGCACGGGCGCCTTTCTTCCGTAAAT
GAATCGCCTCTTTCGAGGTAGGGCTGAGGTTGTGGAGCCCTCCTGTGAGC
GCACCTGTGGGCAAGGACTAAAATTCAGGGAGACGCAGCTCGCACAGGCG
TTTCAGCTTGTTGTTGTTGCCAAGGATAGCTGCGTGGTTGGCCTTGAACA
GGTCGTTACGGGCCACCACCCAGGCACCCGAAAATATTATCTGCGGGGGG
TTGGGGAGGGAGGCATAGGAGATCGCGGCTATCCCACTCAAGACTCTTTT
TTCCAGCGATGTGCTTGCTATCCGGATTTGAGCAGTAACGCCGACAACAG
TCCTTATACACAATGTCATCGGGGTTTTAGCACCACCTCAACCCCGTTTA
ACCGTTTCACGCTCATGACGGTCTCTTGCAAAATTTTCGCCCTGTCCGGG
TGGGTTGTTAGTGCTGCAGTTTTCTTGAATGATTATTCTAGTACTTGATT
TCCAGCCTTAAGGCATGTCTTGAAGCAATGAGGGCGCAAGAGCTCGTCCT
CATGCAAGTGAGACTATTAATAGCGCCTGCTTTTTCCCAATCCGGCACGG
CACACGTGATTACCCGTGAAGGTGAACTTGCGTGGACACTCGAAACGTGA
ACGCGTATTTTCACCTGCAGAAAAACATTCGAGGATGGCGACGAGCGTCG
CCCCTTGTGGCCGCTTGTGTGGGACTGTGTGCAAGCACGCCTTTCGCATT
CCCACGGCAAAACATGAACATGAAACCTCAATTGCCGCACGCCCGAGAGA
GGTTTCTCGGCTTCGAGCAGGGACCAGGCGAACAATTGTAACAGCAACCA
AAGCTTTGCTAACGCGGGTGTGCTTTCGAAAACAGTCGTGGAAGCGGGCG
AGGAGCAGGGGCAGGAGGAGGTGGCGTAGCGGGGCCCCTCGACAAGCTGG
CGGAGATGATCGGGGTGCAAGGGCGTTTCGTCACCATTCCGGGCGCACTG
GGGGTGCAGGAGAACCAAGTTTCGCTACTCCACCTTATGATTGCCGCAAC
GGTGGTGAGAAAATGCCTCGTGTTTCTCCCGCTTTTTGGAAAACCAGGTG
TAGGGGCGAGGGCGTCAACAACAGACATACATCTACGTAGCTACGTCCCT
CAGGCCAAATTCCACTTGGGGCTTACCCTCTTTTCCGAGCTCCTCAGTCC
TTTGAAACTCAAATGTACTTTTAATTCTCGCTTCTCAGCACTTTGAAGTT
CGCACAGGCATGCCAACATACTTTAATGTATAGATTTCCCGGCTGGGGTA
CTCATGATACTGAGGAGGGCTCCCTCCAAGTCTCAAGTGCTCTCTGCGCA
CGATGCGCTTTTGGCCAGCGCGCTCGGGAGGACACACACACACATGCAGC
GGTCGAGCTCTAACTCCGCCGCATAATAAACTTGATTTTTCAATTGATCT
CTTACTCACAGTCTTGGAGTGCGCGCGTCTGACTTGTCACGTTGGAATTC
TCCACATTCGATCGGAGTTGGTCTGTGTGGTCGCATCATGTGCGCGACCA
CGAGGCTGCGTTCGGATCTCTGTTCTTTACTGTTGAAACAGCATTGAGCT
GCCGCCAGCGCTCTCACAACCTGTATCTTCTTTACTTATACTGTGTCTTC
TACTGTGTCATCCCTCGGCTTGAGAGGATTTCTAAGTATAAAGACTCGAT
TGTGTGTTATGAGAGAAACCCTTTGTGTTGGATGCGAAATTGCAACGCGG
GACAGAGACACACAAGCGCACATATGCAGCCCATTCCTGGCTTCCAGCTT
TGAACTGGACGATGGGCTCTATGTTTGTGCATTTGATGACGTTCGTATCG
TTAGATGTGTGTGTTGGCGGGCTTGTGCGAGATACCTGCAGTGCGCTCCC
TCTCTCTCTCTCTCTCCCCACCCCCTCCTTTCTTTTCGAACGTCCGCGGA
CATGGCCGCTGCTGCAGCGTTCAGAGCCAAGCTTCAGGTCTGCACGCTCA
TCAATCAGTAATCGCAGCGCTCATAGTATGTAATCCGTGTGTGTATGCGA
GAGCTTGCTGTTCGTAGTTAGCACATGAGCACACTAAGCCATGCGCATTC
GCGCGCGTGTCGGGTTCAAATTCGCAGGCGTTCAATCTCCTACATTGAAC
CTCATGCACACACACAGACTGCACACCAGAGACTGCACACACACCACTCA
CCCCTTTGCCCTATCGGTGTGCTTCACACCGCTACCCAATCAACGGCGTG
TCGCCGTCCCCCTCATTTCATCACCAGCCTGTACAATGTTACAACACACG
ACCGCCCGAGGGCGATGAGTTCTCACTGCCTCGACCCTCTGCGCGGAATA
GATATATTACTCTATACAGCTGGCGCGATCGTGACAAAGATGCTCGACAT
GTTGCAACACACAGGGCTCAAGCACAGCCTACCCCCCCTCAAAGGGGCCA
GGAAGAACGTCTCTGTTAACACAACAACGATTGCGACAAAGGGTGCCAAG
AAGAGAGATCGGGTGTGGATCAGGAAGTGTAACAACGGCTCTCGTTTGCA
CGCGCAGGGAGCAAATGAAGCCGTCCGTGTAAGATAATGCGTGCTCGCTA
CACCTCGCCTGCCGATACTTGGGGCGAAAGCGATCGAAGCGAATCTTTCT
CGTGCAACGAAGTGTTTCGGATCCTGAGTCGGTTCACCACCGTTAATTGA
CCATTTGCAGGTGTTGTTCGGGGGCTGGAAGGCCGCGGCAGTGATGGTGT
TCGCGTACGTCATCACCAACCAAAAGGGTCGAGCCCGGTAGCCAAAGGCT
GTTCCATCAAGAAGGGAAGGGGAGACCGGAGCGATTTAAATTTCTCCTTT
ATGTTGTGCGCCCTCGAGCCCTTAGGTCGTTGTTGTTTAGTTCGTGACAG
GTGCTCTTCGCACTCTTGTGTTTGCTATTTCGGCGGCTTTCCCCGGGTGG
ATGCATGACATCGTGTTCGCTCCGTGCATACACAGGAGCCAATCTGAACA
AGCTGCGCCACTTGCTCCGTTGCGTTTCCTCCTTTGATGCACTTTAAGTT
AGCGTGTGTCTCGCGACTGCTGCTGTGAATATAGTGGTGAGCAGTCAGAT
GTGGACGGGAGGATCGTGTTTGCTTCAAAATCGCCTAGAGTCTACAAGTA
TACTTCCTCCCTACATTTGTCCGCATCGTGTCTGTGTGTGTACTTCCTTC
CGAGTCGGCATCTTCGCCTCGTCAAACATGCTGCCTCCCCTGACCTCACA
CAGAACCACTCACTCCCTTTTGAGCGAAGCCAGTTCTCGTGCGAGCAAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5325722..5329270-

>mRNA_P-fluviatile_contig1.483.1 ID=mRNA_P-fluviatile_contig1.483.1|Name=mRNA_P-fluviatile_contig1.483.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=360bp|location=Sequence derived from alignment at P-fluviatile_contig1:5325722..5329270- (Porterinema fluviatile SAG_2381)
ATGATCGGGGTGCAAGGGCGTTTCGTCACCATTCCGGGCGCACTGGGGGT
GCAGGAGAACCAAGTTTCGCTACTCCACCTTATGATTGCCGCAACGGTGA
TGATCGGGGTGCAAGGGCGTTTCGTCACCATTCCGGGCGCACTGGGGGTG
CAGGAGAACCAAGTTTCGCTACTCCACCTTATGATTGCCGCAACGGTGGT
GTTGTTCGGGGGCTGGAAGGCCGCGGCAGTGATGGTGTTCGCGTACGTCA
TCACCAACCAAAAGGGTCGAGCCCGGTAGGTGTTGTTCGGGGGCTGGAAG
GCCGCGGCAGTGATGGTGTTCGCGTACGTCATCACCAACCAAAAGGGTCG
AGCCCGGTAG
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