mRNA_P-fluviatile_contig1.398.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.398.1
Unique NamemRNA_P-fluviatile_contig1.398.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4584735..4585648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size834
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.2643807-CDS-P-fluviatile_contig1:4584734..45855681622815270.2643807-CDS-P-fluviatile_contig1:4584734..4585568Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4584735..4585568 +
1693561322.007436-CDS-P-fluviatile_contig1:4584734..45855681693561322.007436-CDS-P-fluviatile_contig1:4584734..4585568Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4584735..4585568 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815270.274187-UTR-P-fluviatile_contig1:4585568..45856481622815270.274187-UTR-P-fluviatile_contig1:4585568..4585648Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4585569..4585648 +
1693561322.0472558-UTR-P-fluviatile_contig1:4585568..45856481693561322.0472558-UTR-P-fluviatile_contig1:4585568..4585648Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4585569..4585648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.398.1prot_P-fluviatile_contig1.398.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4584735..4585568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.398.1

>prot_P-fluviatile_contig1.398.1 ID=prot_P-fluviatile_contig1.398.1|Name=mRNA_P-fluviatile_contig1.398.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=278bp
PGPLALFILSHPGVVPVPSHATAASDALSVAARRSGWAVRAAGRGETRAH
VFVVVHASLLLLLLYHFGLEHVHVVAVVVVALDGLIPGTAAALGATAGAA
IATTAGFRLRAFLLGTRGGRGRRRRCRHGGVSIMFDLHGGQRAFLLFSPI
HPLRRRRRRRRLLHAGPVCCCMSLCAISSFLVEPSYPLLDIRRATPCFFR
TTGPALRQQASTAGRSRRPFRRHIALSAATATTAATARAVDRHFPPPSLP
LPVTPDGAVGCTCTLPGPFLPRALLAG*
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mRNA from alignment at P-fluviatile_contig1:4584735..4585648+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.398.1 ID=mRNA_P-fluviatile_contig1.398.1|Name=mRNA_P-fluviatile_contig1.398.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=914bp|location=Sequence derived from alignment at P-fluviatile_contig1:4584735..4585648+ (Porterinema fluviatile SAG_2381)
CCCGGTCCCCTTGCCCTCTTTATTCTCTCCCATCCCGGCGTCGTCCCCGT
CCCGAGCCACGCCACCGCCGCCAGCGACGCCCTTTCTGTTGCGGCACGCC
GCAGCGGATGGGCTGTTCGCGCGGCGGGAAGGGGAGAGACTCGCGCTCAT
GTCTTCGTTGTCGTCCACGCGTCTCTTCTTCTGCTTCTTCTTTATCATTT
TGGCCTCGAACACGTTCATGTCGTCGCCGTCGTCGTCGTCGCTCTGGATG
GTCTTATTCCGGGCACCGCCGCCGCCCTTGGTGCTACTGCCGGCGCCGCA
ATCGCCACCACCGCCGGTTTTCGCCTTCGCGCTTTTCTTCTTGGCACTCG
CGGCGGCAGGGGGCGGCGACGAAGGTGCCGCCACGGCGGTGTCAGCATCA
TGTTCGACCTGCATGGGGGACAGCGAGCCTTCCTCCTTTTCTCGCCCATT
CACCCCCTTCGTCGTCGTCGTCGTCGTCGTCGTCTTCTTCACGCCGGGCC
CGTTTGCTGCTGCATGAGTCTCTGCGCCATCAGCAGCTTCCTCGTCGAGC
CCTCTTACCCCCTTCTTGACATACGCCGGGCTACTCCATGCTTTTTTCGC
ACGACCGGGCCCGCTCTTCGACAACAGGCCTCTACCGCTGGGAGAAGCAG
GCGTCCCTTCCGCAGACATATTGCGCTCTCTGCTGCCACCGCTACCACTG
CGGCTACTGCTAGGGCTGTCGACAGACATTTCCCCCCCCCCTCCTTGCCC
CTTCCCGTTACCCCCGACGGCGCTGTCGGTTGTACCTGCACCCTCCCTGG
ACCTTTCCTGCCTCGCGCTCTCCTTGCGGGATAAGGCAGGGCTGCCGTCC
CCGCTATCTTCGGGGCGGCGATACTTCCGCTGCTTGACGGGACTCGTGTT
CCCACCCCGGCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4584735..4585648+

>mRNA_P-fluviatile_contig1.398.1 ID=mRNA_P-fluviatile_contig1.398.1|Name=mRNA_P-fluviatile_contig1.398.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1668bp|location=Sequence derived from alignment at P-fluviatile_contig1:4584735..4585648+ (Porterinema fluviatile SAG_2381)
CCCGGTCCCCTTGCCCTCTTTATTCTCTCCCATCCCGGCGTCGTCCCCGT
CCCGAGCCACGCCACCGCCGCCAGCGACGCCCTTTCTGTTGCGGCACGCC
GCAGCGGATGGGCTGTTCGCGCGGCGGGAAGGGGAGAGACTCGCGCTCAT
GTCTTCGTTGTCGTCCACGCGTCTCTTCTTCTGCTTCTTCTTTATCATTT
TGGCCTCGAACACGTTCATGTCGTCGCCGTCGTCGTCGTCGCTCTGGATG
GTCTTATTCCGGGCACCGCCGCCGCCCTTGGTGCTACTGCCGGCGCCGCA
ATCGCCACCACCGCCGGTTTTCGCCTTCGCGCTTTTCTTCTTGGCACTCG
CGGCGGCAGGGGGCGGCGACGAAGGTGCCGCCACGGCGGTGTCAGCATCA
TGTTCGACCTGCATGGGGGACAGCGAGCCTTCCTCCTTTTCTCGCCCATT
CACCCCCTTCGTCGTCGTCGTCGTCGTCGTCGTCTTCTTCACGCCGGGCC
CGTTTGCTGCTGCATGAGTCTCTGCGCCATCAGCAGCTTCCTCGTCGAGC
CCTCTTACCCCCTTCTTGACATACGCCGGGCTACTCCATGCTTTTTTCGC
ACGACCGGGCCCGCTCTTCGACAACAGGCCTCTACCGCTGGGAGAAGCAG
GCGTCCCTTCCGCAGACATATTGCGCTCTCTGCTGCCACCGCTACCACTG
CGGCTACTGCTAGGGCTGTCGACAGACATTTCCCCCCCCCCTCCTTGCCC
CTTCCCGTTACCCCCGACGGCGCTGTCGGTTGTACCTGCACCCTCCCTGG
ACCTTTCCTGCCTCGCGCTCTCCTTGCGGGATAACCCGGTCCCCTTGCCC
TCTTTATTCTCTCCCATCCCGGCGTCGTCCCCGTCCCGAGCCACGCCACC
GCCGCCAGCGACGCCCTTTCTGTTGCGGCACGCCGCAGCGGATGGGCTGT
TCGCGCGGCGGGAAGGGGAGAGACTCGCGCTCATGTCTTCGTTGTCGTCC
ACGCGTCTCTTCTTCTGCTTCTTCTTTATCATTTTGGCCTCGAACACGTT
CATGTCGTCGCCGTCGTCGTCGTCGCTCTGGATGGTCTTATTCCGGGCAC
CGCCGCCGCCCTTGGTGCTACTGCCGGCGCCGCAATCGCCACCACCGCCG
GTTTTCGCCTTCGCGCTTTTCTTCTTGGCACTCGCGGCGGCAGGGGGCGG
CGACGAAGGTGCCGCCACGGCGGTGTCAGCATCATGTTCGACCTGCATGG
GGGACAGCGAGCCTTCCTCCTTTTCTCGCCCATTCACCCCCTTCGTCGTC
GTCGTCGTCGTCGTCGTCTTCTTCACGCCGGGCCCGTTTGCTGCTGCATG
AGTCTCTGCGCCATCAGCAGCTTCCTCGTCGAGCCCTCTTACCCCCTTCT
TGACATACGCCGGGCTACTCCATGCTTTTTTCGCACGACCGGGCCCGCTC
TTCGACAACAGGCCTCTACCGCTGGGAGAAGCAGGCGTCCCTTCCGCAGA
CATATTGCGCTCTCTGCTGCCACCGCTACCACTGCGGCTACTGCTAGGGC
TGTCGACAGACATTTCCCCCCCCCCTCCTTGCCCCTTCCCGTTACCCCCG
ACGGCGCTGTCGGTTGTACCTGCACCCTCCCTGGACCTTTCCTGCCTCGC
GCTCTCCTTGCGGGATAA
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