mRNA_P-fluviatile_contig1.396.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.396.1
Unique NamemRNA_P-fluviatile_contig1.396.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 1.040e-70
Identity = 153/268 (57.09%), Postives = 167/268 (62.31%), Query Frame = 1 
Query:   40 ESGLVDVFTVSVRRMWENCWSYNHEGTKAWLAAERLSCVFERLLLEWVLRTCPAPPLLSQLLETEVRPCSACGIGYDPAASASAAVAADAPGNGSEVSASRTGNASPPFQAAATAAA-PPVGDA--PATVVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGARGRG------GAGMALARRPPAEGFGCGSRWSEPAEVGEEAVGAGSSPAMALANEEGCTVAGWAAGKGVEGPCAERSTGRT-REPPLLCGSGHGGSLETGG 813
            E+GLVD FT+SVRRMWENCWSYNHEGTKAW+AA RLS VFERLL EW+LR  PAPP L QLL  E RPCSACG   DP  S       D    GS  + + +GNASPP  AAA+ AA    G+A  PATVVCDFCDATYHL CLRPPL QVPR EWFCPACVCP G  G G        G  L RRPP  GFGC SRWS  +  G ++   G + A ALAN  G   A                T     EPPLLCGSG GGS+E  G
Sbjct: 1398 EAGLVDEFTISVRRMWENCWSYNHEGTKAWVAAVRLSSVFERLLREWILRATPAPPGLPQLLGGETRPCSACGAVDDP--STPDVRLGD---TGSSGAPATSGNASPPAAAAASVAALSATGEAAAPATVVCDFCDATYHLGCLRPPLAQVPRGEWFCPACVCP-GTAGGGXXGWGQATGATLVRRPPEGGFGCRSRWSGTSAGGNKS---GEAAARALANGAGGRAADXXXXXXXXXXXXXVGTAAAGMEPPLLCGSGSGGSIEKDG 1656
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 8.910e-70
Identity = 152/275 (55.27%), Postives = 166/275 (60.36%), Query Frame = 1 
Query:   40 ESGLVDVFTVSVRRMWENCWSYNHEGTKAWLAAERLSCVFERLLLEWVLRTCPAPPLLSQLLETEVRPCSACGIGYDPAASASAAVAA--DAPGNGSEVSASRT--GNASPPFQA--------AATAAAPPVGDAPATVVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCP-LGARGRGGAGMA----LARRPPAEGFGCGSRWSEPAEVGEEAVGAGSSPAMALANEEGCTVAGWAAGKGVEGPCAERSTGRTREPPLLCGSGHGGSLETGG 813
            E+GLVD FT+SVRRMWENCWSYNHEGTKAWLAA RLS VFERLL EW+LR  PAPP L QLL +E RPCSACG   DP+ +A AA AA  D P   + +S + T  GNASPP            AT  A     APATVVCDFCDATYHL CL PPL QVPR EWFCPACVCP   A G GG G A    L RRPP  GFGC SRWS  +  G ++  A +                        G     + G   EPPLLCGSG GGSLE  G
Sbjct:  994 EAGLVDEFTISVRRMWENCWSYNHEGTKAWLAAVRLSSVFERLLREWILRATPAPPGLPQLLGSEARPCSACGAVEDPSTAAEAAAAATPDVPLGDTGISGAPTTSGNASPPXXXXXXXXXXLVATGEAA----APATVVCDFCDATYHLGCLHPPLAQVPRGEWFCPACVCPGTAAAGGGGWGQATGATLVRRPPEGGFGCRSRWSGTSAGGNKSGAAAARALXXXXXXXXXXXXXXXXXXXXXGAVGTAAAGV--EPPLLCGSGSGGSLEKDG 1262
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A7L3E537_9PASS (PHRF1 protein (Fragment) n=1 Tax=Chaetops frenatus TaxID=221966 RepID=A0A7L3E537_9PASS)

HSP 1 Score: 62.4 bits (150), Expect = 2.770e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGARG 537
            ++CD CDA YH++CL PPL +VP  EWFCPAC  P+GA G
Sbjct:  202 LLCDGCDAGYHMECLNPPLTEVPVDEWFCPACA-PMGANG 240
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: UPI00188E0B55 (PHD and RING finger domain-containing protein 1 isoform X1 n=3 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188E0B55)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-7
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGA 531
            ++CD CDA YH++CLRPPL +VP  EWFCP C  P GA
Sbjct:  298 LLCDGCDAGYHMECLRPPLQEVPVDEWFCPECAAPEGA 335
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A851P5G7_9GALL (PHRF1 protein (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851P5G7_9GALL)

HSP 1 Score: 62.0 bits (149), Expect = 3.720e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGA 531
            ++CD CDA YH++CL PPL +VP  EWFCPACV PLGA
Sbjct:  210 LLCDGCDAGYHMECLNPPLSEVPVDEWFCPACV-PLGA 246
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A9TBW6_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TBW6_PHYPA)

HSP 1 Score: 62.0 bits (149), Expect = 3.860e-7
Identity = 48/158 (30.38%), Postives = 74/158 (46.84%), Query Frame = 1 
Query:   46 GLVDVFTVSVRRMWENCWSYNHEGTKAWLAAERLSCVFERLLLEWVLRTCPAPPLLSQLLETEVRPCSACGIGYDPAASASAAVAADAPGNGSEVSASRTGNASPPFQAAATAAAPPVG-DAPATVVCDFCDATYHLDCLRPPLVQVPRAEWFCPACV 516
            G  D F   +R++W+N  S +  G+     A  LS +FE+L L+ V+      P      E      S      D +  +++       GN ++    + G A  P++   T     V  D  + ++CD CDA YH+ CL PPL +VP+  WFCP+CV
Sbjct: 1837 GSTDAFAADMRQIWKNVESVHKSGSAILELANTLSQLFEKLYLKQVVSLIKGMPDTKDDKEKV----SDVDTKVDGSVRSNSKAGTKGSGNAAD---DKLGKA--PWEDDTTCRVCGVDEDYDSILLCDGCDAEYHIYCLVPPLEKVPKGNWFCPSCV 1985
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A7I4C0B1_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4C0B1_PHYPA)

HSP 1 Score: 62.0 bits (149), Expect = 3.950e-7
Identity = 48/158 (30.38%), Postives = 74/158 (46.84%), Query Frame = 1 
Query:   46 GLVDVFTVSVRRMWENCWSYNHEGTKAWLAAERLSCVFERLLLEWVLRTCPAPPLLSQLLETEVRPCSACGIGYDPAASASAAVAADAPGNGSEVSASRTGNASPPFQAAATAAAPPVG-DAPATVVCDFCDATYHLDCLRPPLVQVPRAEWFCPACV 516
            G  D F   +R++W+N  S +  G+     A  LS +FE+L L+ V+      P      E      S      D +  +++       GN ++    + G A  P++   T     V  D  + ++CD CDA YH+ CL PPL +VP+  WFCP+CV
Sbjct: 1763 GSTDAFAADMRQIWKNVESVHKSGSAILELANTLSQLFEKLYLKQVVSLIKGMPDTKDDKEKV----SDVDTKVDGSVRSNSKAGTKGSGNAAD---DKLGKA--PWEDDTTCRVCGVDEDYDSILLCDGCDAEYHIYCLVPPLEKVPKGNWFCPSCV 1911
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A7K7X6G2_9PASS (PHRF1 protein (Fragment) n=1 Tax=Mohoua ochrocephala TaxID=874463 RepID=A0A7K7X6G2_9PASS)

HSP 1 Score: 61.6 bits (148), Expect = 4.980e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGARG 537
            ++CD CDA YH++CL PPL +VP  EWFCPAC  P+GA G
Sbjct:  180 LLCDGCDAGYHMECLNPPLSEVPVDEWFCPACA-PMGANG 218
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BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A7K5QKT6_9PASE (PHRF1 protein (Fragment) n=1 Tax=Prunella himalayana TaxID=670356 RepID=A0A7K5QKT6_9PASE)

HSP 1 Score: 61.6 bits (148), Expect = 4.980e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGARG 537
            ++CD CDA YH++CL PPL +VP  EWFCPAC  P+GA G
Sbjct:  180 LLCDGCDAGYHMECLNPPLSEVPVDEWFCPACA-PMGANG 218
[Close]
BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Match: A0A7L3QB98_9SYLV (PHRF1 protein (Fragment) n=1 Tax=Cettia cetti TaxID=68486 RepID=A0A7L3QB98_9SYLV)

HSP 1 Score: 61.6 bits (148), Expect = 4.980e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:  418 VVCDFCDATYHLDCLRPPLVQVPRAEWFCPACVCPLGARG 537
            ++CD CDA YH++CL PPL +VP  EWFCPAC  P+GA G
Sbjct:  180 LLCDGCDAGYHMECLNPPLSEVPVDEWFCPACA-PMGANG 218
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE1.040e-7057.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI13_ECTSI8.910e-7055.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7L3E537_9PASS2.770e-762.50PHRF1 protein (Fragment) n=1 Tax=Chaetops frenatus... [more]
UPI00188E0B553.710e-763.16PHD and RING finger domain-containing protein 1 is... [more]
A0A851P5G7_9GALL3.720e-768.42PHRF1 protein (Fragment) n=1 Tax=Penelope pileata ... [more]
A9TBW6_PHYPA3.860e-730.38Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7I4C0B1_PHYPA3.950e-730.38Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
A0A7K7X6G2_9PASS4.980e-762.50PHRF1 protein (Fragment) n=1 Tax=Mohoua ochrocepha... [more]
A0A7K5QKT6_9PASE4.980e-762.50PHRF1 protein (Fragment) n=1 Tax=Prunella himalaya... [more]
A0A7L3QB98_9SYLV4.980e-762.50PHRF1 protein (Fragment) n=1 Tax=Cettia cetti TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4573218..4574454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue2.4e-62
Seed eggNOG ortholog2880.D8LI13
EggNOG free text desc.mRNA processing
EggNOG OGsKOG0825@1,KOG0825@2759
COG Functional cat.LO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size813
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815330.3541806-CDS-P-fluviatile_contig1:4573217..45739071622815330.3541806-CDS-P-fluviatile_contig1:4573217..4573907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4573218..4573907 -
1693561512.2675834-CDS-P-fluviatile_contig1:4573217..45739071693561512.2675834-CDS-P-fluviatile_contig1:4573217..4573907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4573218..4573907 -
1622815330.3643947-CDS-P-fluviatile_contig1:4574331..45744541622815330.3643947-CDS-P-fluviatile_contig1:4574331..4574454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4574332..4574454 -
1693561512.8490112-CDS-P-fluviatile_contig1:4574331..45744541693561512.8490112-CDS-P-fluviatile_contig1:4574331..4574454Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4574332..4574454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.396.1prot_P-fluviatile_contig1.396.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4573218..4574454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.396.1

>prot_P-fluviatile_contig1.396.1 ID=prot_P-fluviatile_contig1.396.1|Name=mRNA_P-fluviatile_contig1.396.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=271bp
GAKAESAAGEIAVESGLVDVFTVSVRRMWENCWSYNHEGTKAWLAAERLS
CVFERLLLEWVLRTCPAPPLLSQLLETEVRPCSACGIGYDPAASASAAVA
ADAPGNGSEVSASRTGNASPPFQAAATAAAPPVGDAPATVVCDFCDATYH
LDCLRPPLVQVPRAEWFCPACVCPLGARGRGGAGMALARRPPAEGFGCGS
RWSEPAEVGEEAVGAGSSPAMALANEEGCTVAGWAAGKGVEGPCAERSTG
RTREPPLLCGSGHGGSLETGG
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mRNA from alignment at P-fluviatile_contig1:4573218..4574454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.396.1 ID=mRNA_P-fluviatile_contig1.396.1|Name=mRNA_P-fluviatile_contig1.396.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1237bp|location=Sequence derived from alignment at P-fluviatile_contig1:4573218..4574454- (Porterinema fluviatile SAG_2381)
GGGGCGAAGGCGGAGTCGGCTGCAGGAGAGATAGCAGTAGAGTCCGGCCT
CGTCGACGTTTTCACAGTTTCGGTTCGGAGGATGTGGGAGAACTGCTGGA
GCTACAACCACGAGGGCACGAAGGTTCGGTCCACCTGCCACCTGTTCTGA
CTCGATTGAAGTGCTGACCGTCCCGTCTCCACTGCGGGGAGGGGGCGTGT
AAGTTCCATCCGAGCAGGTTGGACGCAGGCCTCGAAAGTGTCGAGTCCGC
GCGTTCTTATCGACGGTACAGTTGCTGCCCGGTTGTCGTCAGGACGAATC
TGGCGGAGTGAAAGGAGCGGGGTGTTTTGTTTGTGTGTGCGATCTATAGC
TCAAACTTGGTCCCGTTTCGTTCGTGTATATAGTTCGTTTTGGATCGAGA
ACAGACTCCTTTTGCAAGGCCAGATGCTCAATCGAAGACAAGGTTTGCGC
GTTCCAACGTACTTGGACAACTTTTTTGGCCCAATCCTTGCTCCCCCTCT
CCACCGCCGATCCTCGTGTCCGCCCGCCACCGATGGCCCGGAACCAGGCC
TGGCTGGCAGCGGAACGCTTGTCCTGCGTGTTCGAGCGCCTTCTACTCGA
GTGGGTCCTCAGGACATGCCCGGCGCCGCCGCTGCTGTCTCAACTGCTCG
AGACCGAGGTCCGGCCTTGCTCCGCCTGCGGGATCGGCTACGACCCCGCC
GCGTCTGCATCCGCGGCGGTGGCGGCGGATGCGCCCGGCAACGGTAGCGA
GGTCAGCGCTTCCAGAACCGGCAACGCTAGTCCTCCTTTCCAAGCCGCTG
CCACTGCCGCTGCTCCTCCGGTGGGGGACGCCCCGGCCACGGTTGTCTGC
GACTTCTGCGACGCCACATACCACCTGGATTGCCTGCGGCCCCCGCTGGT
TCAGGTGCCCCGCGCGGAGTGGTTCTGCCCGGCGTGCGTCTGCCCCCTCG
GCGCGCGGGGCCGCGGGGGGGCCGGGATGGCGCTGGCTCGCCGCCCACCC
GCCGAGGGCTTCGGCTGCGGTTCTCGCTGGTCTGAGCCGGCAGAGGTAGG
AGAAGAAGCAGTAGGAGCAGGGTCTTCGCCTGCGATGGCTCTTGCAAATG
AAGAAGGCTGCACAGTGGCGGGGTGGGCGGCAGGAAAAGGGGTTGAGGGG
CCGTGCGCTGAGCGAAGTACGGGCAGGACCCGGGAGCCTCCCCTGCTGTG
CGGGTCCGGACACGGCGGGTCACTCGAAACGGGCGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4573218..4574454-

>mRNA_P-fluviatile_contig1.396.1 ID=mRNA_P-fluviatile_contig1.396.1|Name=mRNA_P-fluviatile_contig1.396.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1626bp|location=Sequence derived from alignment at P-fluviatile_contig1:4573218..4574454- (Porterinema fluviatile SAG_2381)
GGGGCGAAGGCGGAGTCGGCTGCAGGAGAGATAGCAGTAGAGTCCGGCCT
CGTCGACGTTTTCACAGTTTCGGTTCGGAGGATGTGGGAGAACTGCTGGA
GCTACAACCACGAGGGCACGAAGGGGGCGAAGGCGGAGTCGGCTGCAGGA
GAGATAGCAGTAGAGTCCGGCCTCGTCGACGTTTTCACAGTTTCGGTTCG
GAGGATGTGGGAGAACTGCTGGAGCTACAACCACGAGGGCACGAAGGCCT
GGCTGGCAGCGGAACGCTTGTCCTGCGTGTTCGAGCGCCTTCTACTCGAG
TGGGTCCTCAGGACATGCCCGGCGCCGCCGCTGCTGTCTCAACTGCTCGA
GACCGAGGTCCGGCCTTGCTCCGCCTGCGGGATCGGCTACGACCCCGCCG
CGTCTGCATCCGCGGCGGTGGCGGCGGATGCGCCCGGCAACGGTAGCGAG
GTCAGCGCTTCCAGAACCGGCAACGCTAGTCCTCCTTTCCAAGCCGCTGC
CACTGCCGCTGCTCCTCCGGTGGGGGACGCCCCGGCCACGGTTGTCTGCG
ACTTCTGCGACGCCACATACCACCTGGATTGCCTGCGGCCCCCGCTGGTT
CAGGTGCCCCGCGCGGAGTGGTTCTGCCCGGCGTGCGTCTGCCCCCTCGG
CGCGCGGGGCCGCGGGGGGGCCGGGATGGCGCTGGCTCGCCGCCCACCCG
CCGAGGGCTTCGGCTGCGGTTCTCGCTGGTCTGAGCCGGCAGAGGTAGGA
GAAGAAGCAGTAGGAGCAGGGTCTTCGCCTGCGATGGCTCTTGCAAATGA
AGAAGGCTGCACAGTGGCGGGGTGGGCGGCAGGAAAAGGGGTTGAGGGGC
CGTGCGCTGAGCGAAGTACGGGCAGGACCCGGGAGCCTCCCCTGCTGTGC
GGGTCCGGACACGGCGGGTCACTCGAAACGGGCGGCGCCTGGCTGGCAGC
GGAACGCTTGTCCTGCGTGTTCGAGCGCCTTCTACTCGAGTGGGTCCTCA
GGACATGCCCGGCGCCGCCGCTGCTGTCTCAACTGCTCGAGACCGAGGTC
CGGCCTTGCTCCGCCTGCGGGATCGGCTACGACCCCGCCGCGTCTGCATC
CGCGGCGGTGGCGGCGGATGCGCCCGGCAACGGTAGCGAGGTCAGCGCTT
CCAGAACCGGCAACGCTAGTCCTCCTTTCCAAGCCGCTGCCACTGCCGCT
GCTCCTCCGGTGGGGGACGCCCCGGCCACGGTTGTCTGCGACTTCTGCGA
CGCCACATACCACCTGGATTGCCTGCGGCCCCCGCTGGTTCAGGTGCCCC
GCGCGGAGTGGTTCTGCCCGGCGTGCGTCTGCCCCCTCGGCGCGCGGGGC
CGCGGGGGGGCCGGGATGGCGCTGGCTCGCCGCCCACCCGCCGAGGGCTT
CGGCTGCGGTTCTCGCTGGTCTGAGCCGGCAGAGGTAGGAGAAGAAGCAG
TAGGAGCAGGGTCTTCGCCTGCGATGGCTCTTGCAAATGAAGAAGGCTGC
ACAGTGGCGGGGTGGGCGGCAGGAAAAGGGGTTGAGGGGCCGTGCGCTGA
GCGAAGTACGGGCAGGACCCGGGAGCCTCCCCTGCTGTGCGGGTCCGGAC
ACGGCGGGTCACTCGAAACGGGCGGC
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