mRNA_P-fluviatile_contig1.288.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.288.1
Unique NamemRNA_P-fluviatile_contig1.288.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.288.1 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.140e-31
Identity = 103/266 (38.72%), Postives = 138/266 (51.88%), Query Frame = 1 
Query:  283 DDVSTTDHRFRMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAAGR-QPAHGTGRKGD-KCEDYRHSQVFLPDDAALTYRGVGTGETTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL---------------DERL------SKECDE---------ERAAYNRRRGIQPGSDEARAVAAXXXXXXXXRRQARRELSRANRQLALEERMRARQ 984
            DD +T  ++ +MLIASV  ++    WG DLTML+ASQALRITVK++  +D  SR   +A+   +   G+ RK +   ED RHSQ FLP DA  + R VG G+  R + EA V LT   T+ASA EL ++ E+ + + C  GC FAAV   D    PFP+ + APPL +                 D R+      +  CD          E+AA+    G+QPG + A A           RRQAR+  +  NRQL L E   ARQ
Sbjct:   47 DDAATVANKSKMLIASVADFSKPACWGGDLTMLLASQALRITVKLVCSIDMMSRKRDEASATLETDRGSTRKDNINPEDNRHSQTFLPGDAVSSLR-VGGGD--RTVTEATVILTSSCTQASAGELDNLVEVTKATTCCTGCQFAAVSKKDRSTPPFPLVRAAPPLFQAWYQVPRRACCWVCARDDARMQLIFFAADPCDPPIPGAGREAEQAAHKASLGVQPGWEAAAAATRAAEEAAIARRQARKIKAVENRQLELAELANARQ 309
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BLAST of mRNA_P-fluviatile_contig1.288.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.490e-27
Identity = 75/160 (46.88%), Postives = 93/160 (58.13%), Query Frame = 1 
Query:  313 RMLIASVEYYTSDTVWGSDLTMLMASQALRITVKILHPMDKKSRDVYDAAGRQPA--HGTGRKGDKCEDYRHSQVFLPDDAALTYRGVGTGETTRLIEEAAVALTGGMTRASANELADIPEINRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTREL 786
            RML+ASV Y   DTVWG D T+L+ASQAL+ITVK+L P D   R   D +   P    G GRKGDK +D R SQ FL DDA       G G   R++ EA V LT    +AS  EL ++ E+ + + C  G HFAAV   D    PFP+ + APPL + L
Sbjct:   93 RMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRK-RDESSATPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQGGG---RMVAEATVVLTSCTGQASVGELDNLVEVTKSTACPRGVHFAAVSKKDRSTPPFPLVRAAPPLFQAL 248
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BLAST of mRNA_P-fluviatile_contig1.288.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 9.040e-16
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:   15 YDYNATMIIPKTMRTEWVAKFVTGDGNCAWRALAYAMWGTDEYWVQLKLVILAWCVANTELLLAEGHALY 224
            YD  ATMI+   +R  +VA +V GDGNC WR++A A+WGTDEYW QLKL +LAW   N E L+ EG AL+
Sbjct:   86 YDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALF 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JP78_9PHAE2.140e-3138.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K454_9PHAE2.490e-2746.88SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE9.040e-1657.14SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3547826..3550675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1388
Cds size996
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.0616627-UTR-P-fluviatile_contig1:3547825..35479491622815266.0616627-UTR-P-fluviatile_contig1:3547825..3547949Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3547826..3547949 -
1693561298.2259097-UTR-P-fluviatile_contig1:3547825..35479491693561298.2259097-UTR-P-fluviatile_contig1:3547825..3547949Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3547826..3547949 -
1622815266.2433677-UTR-P-fluviatile_contig1:3548211..35482571622815266.2433677-UTR-P-fluviatile_contig1:3548211..3548257Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3548212..3548257 -
1693561298.4227188-UTR-P-fluviatile_contig1:3548211..35482571693561298.4227188-UTR-P-fluviatile_contig1:3548211..3548257Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3548212..3548257 -
1622815266.3137743-UTR-P-fluviatile_contig1:3550453..35506751622815266.3137743-UTR-P-fluviatile_contig1:3550453..3550675Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3550454..3550675 -
1693561299.2647736-UTR-P-fluviatile_contig1:3550453..35506751693561299.2647736-UTR-P-fluviatile_contig1:3550453..3550675Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3550454..3550675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.2570276-CDS-P-fluviatile_contig1:3548257..35483941622815266.2570276-CDS-P-fluviatile_contig1:3548257..3548394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3548258..3548394 -
1693561298.6149755-CDS-P-fluviatile_contig1:3548257..35483941693561298.6149755-CDS-P-fluviatile_contig1:3548257..3548394Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3548258..3548394 -
1622815266.2704885-CDS-P-fluviatile_contig1:3548596..35486831622815266.2704885-CDS-P-fluviatile_contig1:3548596..3548683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3548597..3548683 -
1693561299.0200706-CDS-P-fluviatile_contig1:3548596..35486831693561299.0200706-CDS-P-fluviatile_contig1:3548596..3548683Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3548597..3548683 -
1622815266.2844412-CDS-P-fluviatile_contig1:3549124..35493321622815266.2844412-CDS-P-fluviatile_contig1:3549124..3549332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3549125..3549332 -
1693561299.2331743-CDS-P-fluviatile_contig1:3549124..35493321693561299.2331743-CDS-P-fluviatile_contig1:3549124..3549332Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3549125..3549332 -
1622815266.2979326-CDS-P-fluviatile_contig1:3549889..35504531622815266.2979326-CDS-P-fluviatile_contig1:3549889..3550453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3549890..3550453 -
1693561299.2495842-CDS-P-fluviatile_contig1:3549889..35504531693561299.2495842-CDS-P-fluviatile_contig1:3549889..3550453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3549890..3550453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.288.1prot_P-fluviatile_contig1.288.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3548258..3550453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.288.1

>prot_P-fluviatile_contig1.288.1 ID=prot_P-fluviatile_contig1.288.1|Name=mRNA_P-fluviatile_contig1.288.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=332bp
MMTPSSIRENPPQVRWVQGRDDVSTTDHRFRMLIASVEYYTSDTVWGSDL
TMLMASQALRITVKILHPMDKKSRDVYDAAGRQPAHGTGRKGDKCEDYRH
SQVFLPDDAALTYRGVGTGETTRLIEEAAVALTGGMTRASANELADIPEI
NRDSICRAGCHFAAVLSTDGRNVPFPVFKVAPPLTRELDERLSKECDEER
AAYNRRRGIQPGSDEARAVAAAAVVAAATRRQARRELSRANRQLALEERM
RARQAEKGKVVGLIYEVEDHEERREKGQDQIQRHEESTHHRPSFAERAQA
GVQAELHQRRDEPSTGCWCQEGGRRKGSAEV*
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mRNA from alignment at P-fluviatile_contig1:3547826..3550675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.288.1 ID=mRNA_P-fluviatile_contig1.288.1|Name=mRNA_P-fluviatile_contig1.288.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2850bp|location=Sequence derived from alignment at P-fluviatile_contig1:3547826..3550675- (Porterinema fluviatile SAG_2381)
AGGACGCAAGACCCTACGACTACAACGCCACCATGATTATCCCGAAGACC
ATGCGCACGGAGTGGGTAGCCAAGTTCGTAACCGGCGATGGCAACTGCGC
TTGGCGTGCCTTGGCGTATGCCATGTGGGGTACCGACGAGTACTGGGTCC
AACTTAAGCTTGTGATACTTGCGTGGTGTGTAGCAAACACGGAGTTGCTT
TTAGCGGAGGGTCACGCCTTGTATGATGACACCAAGTTCTATCCGAGAGA
ATCCACCGCAAGTACGGTGGGTTCAAGGAAGGGACGATGTGTCGACGACC
GACCATCGCTTCAGAATGCTCATTGCGTCCGTCGAGTACTACACCTCCGA
TACGGTGTGGGGTAGTGATCTTACGATGCTGATGGCATCACAGGCACTAA
GGATAACGGTGAAGATTTTGCACCCCATGGACAAGAAGTCGCGGGACGTG
TACGATGCGGCGGGTAGACAGCCGGCACACGGTACGGGGAGGAAGGGAGA
CAAATGCGAAGACTACCGTCATTCCCAAGTGTTTCTACCAGACGATGCAG
CGCTTACTTACCGTGGAGTTGGAACAGGTGAAACCACGCGCCTCATCGAG
GAGGCAGCCGTAGCTTTGACGGGCGGCATGACGCGTGCTAGTGCGAATGA
GCTCGCTGACATCCCCGAGATCAACAGAGATTCAATCTGTCGTGCGGGTT
GCCACTTCGCGGCAGTGTTGAGCACGGACGGGAGGAATGTCCCCTTTCCG
GTTTTCAAGGTGGCACCTCCGTTGACGCGGGAGCTGGTGAGTTTCGCGTC
GCAGGTTCCGAGCCCTCCGGTACTCTATGTGTGTGTATGTTTTCGCGTCA
TCTAACCTGGCGTTGGTCACCTCTCGGCGTATTGGTGTGTATCGGTGTGT
GTGTGCTGCGCTCGGTGTTGCTACACCTTGCTGTGTATGTTCTCGGTACA
ATACACGACCAGCTGGGCTCACACAAGAGGAGGTAAACTCCAGTTTTTTT
TCTCCTTTGTACTCACCTTTTCCTGCAGCGTGTGCCTTCAGTTTTGTCGC
GAGAAGGGGTACGGCAGCCCCCCTCGTCCACGGTGAGGTTGAGTGTGTTT
ACTCACGAGCTTTTCATTTGTTGTTTCGCTGTCAGCTGCAAATTGTTTTG
ACAGTTTTCACCCAGCGGGGATCGAAATCAAAGCTTGCTGCTAGATGGTT
GACGAGGTCATCACGTACCACCGGCGCGATCGGTACGGCAAAACGAAATT
TGAAAAAAAAAATTCCCCGATGCACCTTGTGATGCACCTGGTTGATGCTG
TTCCAACCCTGCTATCATGCTCTGATTGTCCTTGTCTTTGCAGGATGAGC
GCTTGAGCAAAGAATGCGACGAGGAGAGGGCCGCGTACAACCGACGGAGA
GGGATCCAGCCTGGCTCGGACGAAGCGAGGGCGGTAGCGGCGGCGGCCGT
GGTAGCTGCGGCAACAAGGCGGCAGGCAAGGAGGGAGTTGTCTCGTGCGA
ACCGGCAGCTGGCGCTGGAGGAGCGGATGAGAGCACGGCAGGCGGAGAAA
GGCAAGGAGGAGGAGGAGGAGGAGGACAAAAAGCGCAAACAGAAGGAGGC
CGAGGAGAAGATGGCGGCGCGGGACGAATTGGCGCGCGAAATGCAGAAGA
AGGACGAGGAGGACATTAAAAAAAAAAAGACGGGGGGGTGCTGGGGAGGG
GAGGAATGGAAAAGGAAAGGTAGCGGGGGCGGGGGGTGCTTCAGAAGAGA
GGGAGGAGACGGCGGAGCCTGGGGACGCTTCAGGACAGAGGGAGGGGACA
CCGGGTGCCGGCGACGGTGCCGAGGTACTATTACCGTACTATAACCGTAG
AGGGCTGTCTTTGTCACAAGTTTAATTTGCCCCATAAGGTAATCTACAGA
CCGTCGAAATTTCCTCTGAGTTAACTCTCCTGCACACATATGTGTCCGTT
GCCTGTGCGATGCCCTTACCCCTCTCCGGACGTTTCCGTCAGGCAAAGTG
GTTGGCCTTATATACGAGGTGGAAGACCACGAGGAGCGTCGCGAAAAGGG
ACAAGACCAGATACAACGTCATGAAGAATGTGAGGAGAAATTATAATTAT
GCGCCTACCCCAAAAGGAATTCAAAAACATTTCGTCCCAATCGTGGTTTC
AAAGTAGTACCTCGGCCTCGCTGGGGAAGCGGGCCGCTCCACCTCTGGCA
AAGCCAACGACGGGTCGTAGTGCGGGCGAGACTGACTGAATTTTATTCGT
TTGTCGTCATCGCACCGTCCGTGAAACGCAGCAACTCACCATCGCCCGAG
CTTTGCAGAAAGAGCACAAGCTGGAGTGCAGGCAGAGCTTCATCAACGTC
GTGACGAACCTTCAACTGGGTGTTGGTGCCAAGAGGGTGGCCGCCGCAAA
GGCTCGGCGGAAGTTTGACAAGGCCGCAAGCGCCCTGGGCAAAGTGGAGC
GGAGATTAGGGAATGTGGGTCGAAAGCTGGCGTGCTTTGTACCCAACCTC
CCTCGGCTAGTCGGGTTGCTTGTCAAGTGTGAAAGGGTATTTGTCCTGGA
AATAATTTTCTCAGTGTGAGGGTTCTGTCGAGCTGATAGAGGTCGGTACA
TGTGGGTTCATCTTCACCGGCCTTTCTTGCCGCAAACAGGACACAACAAC
GGTGATACGTAGTTTCCGCTCGTTCAAGTCCCGTGTGGATTCGACCACCA
CATTGTTATCCGCGGCCGTGCGTCAGGTATGTGAGGGCGAAACGAACGAC
TCGGACAAGAGCAGCGGCAGTGGCGACGACTGGAGCAGTGGAGAGAGCAG
TGGAGACACGGGTAGCTGGTTCAGCGAAGACGAGCTGGAGACGGATGAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3547826..3550675-

>mRNA_P-fluviatile_contig1.288.1 ID=mRNA_P-fluviatile_contig1.288.1|Name=mRNA_P-fluviatile_contig1.288.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1992bp|location=Sequence derived from alignment at P-fluviatile_contig1:3547826..3550675- (Porterinema fluviatile SAG_2381)
ATGATGACACCAAGTTCTATCCGAGAGAATCCACCGCAAGTACGGTGGGT
TCAAGGAAGGGACGATGTGTCGACGACCGACCATCGCTTCAGAATGCTCA
TTGCGTCCGTCGAGTACTACACCTCCGATACGGTGTGGGGTAGTGATCTT
ACGATGCTGATGGCATCACAGGCACTAAGGATAACGGTGAAGATTTTGCA
CCCCATGGACAAGAAGTCGCGGGACGTGTACGATGCGGCGGGTAGACAGC
CGGCACACGGTACGGGGAGGAAGGGAGACAAATGCGAAGACTACCGTCAT
TCCCAAGTGTTTCTACCAGACGATGCAGCGCTTACTTACCGTGGAGTTGG
AACAGGTGAAACCACGCGCCTCATCGAGGAGGCAGCCGTAGCTTTGACGG
GCGGCATGACGCGTGCTAGTGCGAATGAGCTCGCTGACATCCCCGAGATC
AACAGAGATTCAATCTGTCGTGCGGGTTGCCACTTCGCGGCAGTGTTGAG
CACGGACGGGAGGAATGTCCCCTTTCCGGTTTTCAAGGTGGCACCTCCGT
TGACGCGGGAGCTGATGATGACACCAAGTTCTATCCGAGAGAATCCACCG
CAAGTACGGTGGGTTCAAGGAAGGGACGATGTGTCGACGACCGACCATCG
CTTCAGAATGCTCATTGCGTCCGTCGAGTACTACACCTCCGATACGGTGT
GGGGTAGTGATCTTACGATGCTGATGGCATCACAGGCACTAAGGATAACG
GTGAAGATTTTGCACCCCATGGACAAGAAGTCGCGGGACGTGTACGATGC
GGCGGGTAGACAGCCGGCACACGGTACGGGGAGGAAGGGAGACAAATGCG
AAGACTACCGTCATTCCCAAGTGTTTCTACCAGACGATGCAGCGCTTACT
TACCGTGGAGTTGGAACAGGTGAAACCACGCGCCTCATCGAGGAGGCAGC
CGTAGCTTTGACGGGCGGCATGACGCGTGCTAGTGCGAATGAGCTCGCTG
ACATCCCCGAGATCAACAGAGATTCAATCTGTCGTGCGGGTTGCCACTTC
GCGGCAGTGTTGAGCACGGACGGGAGGAATGTCCCCTTTCCGGTTTTCAA
GGTGGCACCTCCGTTGACGCGGGAGCTGGATGAGCGCTTGAGCAAAGAAT
GCGACGAGGAGAGGGCCGCGTACAACCGACGGAGAGGGATCCAGCCTGGC
TCGGACGAAGCGAGGGCGGTAGCGGCGGCGGCCGTGGTAGCTGCGGCAAC
AAGGCGGCAGGCAAGGAGGGAGTTGTCTCGTGCGAACCGGCAGCTGGCGC
TGGAGGAGCGGATGAGAGCACGGCAGGCGGAGAAAGGATGAGCGCTTGAG
CAAAGAATGCGACGAGGAGAGGGCCGCGTACAACCGACGGAGAGGGATCC
AGCCTGGCTCGGACGAAGCGAGGGCGGTAGCGGCGGCGGCCGTGGTAGCT
GCGGCAACAAGGCGGCAGGCAAGGAGGGAGTTGTCTCGTGCGAACCGGCA
GCTGGCGCTGGAGGAGCGGATGAGAGCACGGCAGGCGGAGAAAGGCAAAG
TGGTTGGCCTTATATACGAGGTGGAAGACCACGAGGAGCGTCGCGAAAAG
GGACAAGACCAGATACAACGTCATGAAGAATGCAAAGTGGTTGGCCTTAT
ATACGAGGTGGAAGACCACGAGGAGCGTCGCGAAAAGGGACAAGACCAGA
TACAACGTCATGAAGAATCAACTCACCATCGCCCGAGCTTTGCAGAAAGA
GCACAAGCTGGAGTGCAGGCAGAGCTTCATCAACGTCGTGACGAACCTTC
AACTGGGTGTTGGTGCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAG
TTTGACAACTCACCATCGCCCGAGCTTTGCAGAAAGAGCACAAGCTGGAG
TGCAGGCAGAGCTTCATCAACGTCGTGACGAACCTTCAACTGGGTGTTGG
TGCCAAGAGGGTGGCCGCCGCAAAGGCTCGGCGGAAGTTTGA
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