mRNA_P-fluviatile_contig1.273.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.273.1
Unique NamemRNA_P-fluviatile_contig1.273.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.273.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.210e-64
Identity = 158/316 (50.00%), Postives = 179/316 (56.65%), Query Frame = 3 
Query:  129 MEQVFFRLHVRFVTTVTRLLSPKTRRVLEYVTLANAFLLVVSLAWLHIRFVNPKGGQRSAVSCLPDALERAGVDPAQLHVLQIHIRLPPDDRGGGAISASGTGSQTVPINSKVRSSSGRSSHRSFDRSKGNLGEE--SDSCRHRNGDRGGTGDPAVCSDGGVDAAATAPAGIAVVGATSAADSGAGDGP-------------------PLEFESPPSTPEIFYSMKLVTGKNAVGTLSGPGTLGIEK--YHGGTGAGDSGAXXXXXXXXXXXXXXXXXXXXXXGLVCGGAMEVRHSTVVQTLVDAFSWGKGGGTAV 1007
            MEQVFFRLHVRFVTTVTRLLSPKTRR+LEYVTLANAFLLV SLAWLH RFVNPKG Q SAVSCLP ALE+AGVDPAQLHVLQIHIR PPDD              + P  S     S RS         G   E+  SDS RH  G  G  G   +   GG ++   +  G A    T + +     G                    P   +SPP +PEIFYSMKLVTGK+AVGTLSGPGTLGIE+    GG G   +                   XXXXX  +CG  +E +   +VQTL+DAFSWG  G T +
Sbjct:    1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGSQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXKNLMSFPDGSSRIDDSSRS---------GTNAEQQVSDSRRHSGGAAGDAG-LGISGLGGGESGYASATGTAASACTGSGEEEGAAGTMGSXXXXXXXXXXXXXWLLPPRLDSPPLSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGN---------------NPAGXXXXXXXICGAVVEEKRPALVQTLMDAFSWGGKGETGI 291
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BLAST of mRNA_P-fluviatile_contig1.273.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 6.240e-53
Identity = 150/313 (47.92%), Postives = 164/313 (52.40%), Query Frame = 3 
Query:  129 MEQVFFRLHVRFVTTVTRLLSPKTRRVLEYVTLANAFLLVVSLAWLHIRFVNPKGGQRSAVSCLPDALERAGVDPAQLHVLQIHIRLPPDDRGGGAISASGTGSQTVPINSKVRSSSGRSSHRSFDRSKGNLGEESDSCRHRNG--DRG------GTGDPAVCSDGGVDAAATAPAGIAVVGATSAADSGAGDGP----------PLEFESPPSTPEIFYSMKLVTGKNAVGTLSGPGTLGIEK--YHGGTGAGDSGAXXXXXXXXXXXXXXXXXXXXXXGLVCGGAMEVRHSTVVQTLVDAFSWGKGGGTAV 1007
            MEQVFFRLHVRFVTTVTRLLSPKTRR+LEYVTLANAFLLV SLAWLH RFVNPKG Q SAVSCLP ALE+AGVDPAQLHVLQIHIR PPDD                                                       D G      G       S  G  AA         VGA  A  S +              P   +SPP +PEIFYSMKLVTGK+AVGTLSGPGTLGIE+    GG G   +                   XXXXX  +CG  +E +  T+VQTL+DAFSWG  G T +
Sbjct:    1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADAGLGMSGLGXXXXXXXSVTGTTAATACTGSGEEVGAAGAIGSESXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGN---------------NPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGGKGETGI 298
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BLAST of mRNA_P-fluviatile_contig1.273.1 vs. uniprot
Match: A0A7S2WVH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.730e-5
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 3 
Query:  129 MEQVFFRLHVRFVTTVTRLLSPKTRRVLEYVTLANAFLLVVSLAWLHIRFVNPKGG 296
            MEQVFFRLHVR V T+TR  SP  RRV+EY  LA +  L   +  LH R + P+ G
Sbjct:    1 MEQVFFRLHVRCVRTITRACSPTFRRVVEYGLLALSVGLCSLVVALHTRHIAPRDG 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K094_9PHAE2.210e-6450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK2_ECTSI6.240e-5347.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WVH7_9STRA4.730e-553.57Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3345035..3347321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue5.9e-49
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
Ec32 ortholog descriptionMembralin
Ec32 orthologEc-04_005490.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons4
Model size1053
Cds size924
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.273.1prot_P-fluviatile_contig1.273.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3345035..3347193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.1276803-CDS-P-fluviatile_contig1:3345034..33457121622815315.1276803-CDS-P-fluviatile_contig1:3345034..3345712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3345035..3345712 -
1693561479.732754-CDS-P-fluviatile_contig1:3345034..33457121693561479.732754-CDS-P-fluviatile_contig1:3345034..3345712Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3345035..3345712 -
1622815315.140837-CDS-P-fluviatile_contig1:3346033..33462101622815315.140837-CDS-P-fluviatile_contig1:3346033..3346210Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3346034..3346210 -
1693561479.857037-CDS-P-fluviatile_contig1:3346033..33462101693561479.857037-CDS-P-fluviatile_contig1:3346033..3346210Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3346034..3346210 -
1622815315.1531513-CDS-P-fluviatile_contig1:3346945..33470051622815315.1531513-CDS-P-fluviatile_contig1:3346945..3347005Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3346946..3347005 -
1693561479.874327-CDS-P-fluviatile_contig1:3346945..33470051693561479.874327-CDS-P-fluviatile_contig1:3346945..3347005Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3346946..3347005 -
1622815315.1657557-CDS-P-fluviatile_contig1:3347184..33471931622815315.1657557-CDS-P-fluviatile_contig1:3347184..3347193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3347185..3347193 -
1693561479.8828018-CDS-P-fluviatile_contig1:3347184..33471931693561479.8828018-CDS-P-fluviatile_contig1:3347184..3347193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3347185..3347193 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.18215-UTR-P-fluviatile_contig1:3347193..33473211622815315.18215-UTR-P-fluviatile_contig1:3347193..3347321Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3347194..3347321 -
1693561479.8911464-UTR-P-fluviatile_contig1:3347193..33473211693561479.8911464-UTR-P-fluviatile_contig1:3347193..3347321Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3347194..3347321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.273.1

>prot_P-fluviatile_contig1.273.1 ID=prot_P-fluviatile_contig1.273.1|Name=mRNA_P-fluviatile_contig1.273.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=308bp
MEQVFFRLHVRFVTTVTRLLSPKTRRVLEYVTLANAFLLVVSLAWLHIRF
VNPKGGQRSAVSCLPDALERAGVDPAQLHVLQIHIRLPPDDRGGGAISAS
GTGSQTVPINSKVRSSSGRSSHRSFDRSKGNLGEESDSCRHRNGDRGGTG
DPAVCSDGGVDAAATAPAGIAVVGATSAADSGAGDGPPLEFESPPSTPEI
FYSMKLVTGKNAVGTLSGPGTLGIEKYHGGTGAGDSGAGGNRGDGDIGIG
IGGGDGIGGGGLVCGGAMEVRHSTVVQTLVDAFSWGKGGGTAVQAGAASA
AAAAPSGG
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mRNA from alignment at P-fluviatile_contig1:3345035..3347321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.273.1 ID=mRNA_P-fluviatile_contig1.273.1|Name=mRNA_P-fluviatile_contig1.273.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2287bp|location=Sequence derived from alignment at P-fluviatile_contig1:3345035..3347321- (Porterinema fluviatile SAG_2381)
GTTACGGAGAACGCGCTGTGTCGCTTCCGCTGTTTAATCGAGAAGAGTGG
CGTCCATCAGCGTTTCGTCGTCAAGAGCGACTGGCACGGGCCGAATAGGC
GACACGTGCGGCAGTAAAAAAGGGCGGTATGGAGCAGGTGGGTCGGTGTC
TGTGTGGGAGTCTCGCGCGCCATTGTGTCGTGCTGCAATCCCAAGCTGCT
GCACGGCTCCCTGCTTACTGAACTTCTCTCCCTCTCTTCATCTCTCCTTA
CGTCCCTCCTTCTCGAGCTGATACTAATACTTTTCAATTGCTTCGCTCGA
TGTCGGTGTTGCACAGGTGTTTTTCAGGTTGCACGTCCGGTTTGTCACGA
CCGTCACGAGACTGCTGTCCCCGAAGGCAAGCAAGGCGCGCGTGCTTTGT
GTGCCAAAATCTGCGCGCCCCTAGACATGTCTTCACGCGCACTAGCTACT
CTCATGTCTTGCTGTTGGTGTCGCTCTCGTCGAAAGTATCTCATTATCTC
AGAACTTTGAAGTTGCACTGGGACGTGCTGGATTTCACCGCATCCTACGA
AGGCGTGCACTTGCAGCTTCGACTAATCAACCAGCGGCGTAGCGGCCGTG
TACAGTTGTGGCCTTGGAGCCCGAGAACGCCCCGCGGCCGATTCATACCA
CCCGTGTGGCGTAGACGGCGAAGGCTGGGCGAACAGGAAGCAAGTACACA
TATCGGAGATGCTAGTCACGCCAGTGGCATTGTCTGTACAGGCGTCTCAT
ATGTCCTCGTGCTACACACTCCGACATAGTCCGCGACAGCACCATGACGC
TTCGATGGCTCAAATGCACCGATCACTGTTCGGGCGGCTGAAGGACGACC
GTCTGGAGCAATCCGAAACACAAAACAACTCTTTCCTGCGACAACCTCCC
AGCGGCCACGGCGTCAACAACTTGCGGCTTGGGTTTCCTTCGGGCGTCGC
GTAGGACATGTTTTAGCTAACCTATGGCGTCGATGCCGCTTCTTCTCTGC
TGTTTGATGTTTCTTTTGTTTTCCAAACCCTCATCTTCCCCCCCCCCCTT
CCCCCTCGGCAAACACACACACACACCTGCCGAAACCGTCACTGCTGTGA
TTTGATTGCAGACACGGCGCGTGCTTGAGTACGTTACTCTCGCGAACGCC
TTCTTGCTGGTAGTGTCATTGGCTTGGCTGCACATTCGATTTGTAAATCC
GAAGGGGGGGCAGAGATCAGCCGTCTCATGTCTACCCGATGCCCTGGAGA
GGGCCGGAGTCGACCCTGCGCAGCTCCATGTTCTTCAGGTGAAGCATATC
TTGTTGTTCCCCAGGCTACGTTGATAAGCTACTTAGTGCCGCAAGTCGCC
GTTCTCCGCAACCGAACGCATGCTAGAGGTCAAGTCCTTCGCGGAATGCA
TTGCACGTGCCTTGCTACAGACATTGTGATCAAGGCGCAAGGTGCTGTTT
GTTGTGGAGGAACCCGGACCGTCTGCTTCATCCTTGACATAACTTTTTCT
GTCCCGGCTCTGTGTCCATTCCGGGCCGCTCGCGTACCGTGCGAACCGCC
AACCGATCTCGAACGACCGCTGTTCTTCTCGCTCAATCTCCTCCTTACAT
TCGTCGAAGATACACATACGATTGCCACCTGACGATCGAGGCGGCGGTGC
CATCAGCGCCAGCGGCACCGGGAGCCAAACCGTCCCGATTAATTCGAAAG
TCAGAAGCAGCAGCGGTAGAAGTAGCCACCGATCCTTCGACAGAAGCAAA
GGCAACCTGGGAGAGGAGTCCGATTCCTGCAGACATCGCAATGGCGATCG
CGGCGGTACCGGTGACCCCGCCGTGTGCAGCGACGGCGGCGTCGATGCTG
CTGCCACTGCTCCCGCTGGAATCGCTGTTGTCGGTGCTACCAGCGCCGCC
GACAGCGGAGCCGGCGATGGACCACCTTTGGAGTTCGAATCTCCTCCGTC
TACCCCGGAAATTTTCTACAGCATGAAGCTCGTCACGGGCAAGAATGCAG
TGGGGACTCTTTCCGGGCCCGGTACACTCGGCATCGAGAAGTACCACGGG
GGAACGGGAGCGGGGGATAGTGGTGCAGGTGGGAATCGCGGAGACGGTGA
CATTGGAATCGGCATCGGCGGCGGCGACGGCATCGGCGGAGGTGGTTTGG
TTTGTGGCGGGGCGATGGAAGTCAGGCACTCGACGGTAGTGCAGACGCTG
GTCGATGCTTTTTCGTGGGGGAAAGGAGGGGGGACGGCTGTACAGGCAGG
AGCGGCATCGGCGGCTGCAGCGGCGCCGAGTGGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3345035..3347321-

>mRNA_P-fluviatile_contig1.273.1 ID=mRNA_P-fluviatile_contig1.273.1|Name=mRNA_P-fluviatile_contig1.273.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1848bp|location=Sequence derived from alignment at P-fluviatile_contig1:3345035..3347321- (Porterinema fluviatile SAG_2381)
ATGGAGCAGATGGAGCAGGTGTTTTTCAGGTTGCACGTCCGGTTTGTCAC
GACCGTCACGAGACTGCTGTCCCCGAAGGTGTTTTTCAGGTTGCACGTCC
GGTTTGTCACGACCGTCACGAGACTGCTGTCCCCGAAGACACGGCGCGTG
CTTGAGTACGTTACTCTCGCGAACGCCTTCTTGCTGGTAGTGTCATTGGC
TTGGCTGCACATTCGATTTGTAAATCCGAAGGGGGGGCAGAGATCAGCCG
TCTCATGTCTACCCGATGCCCTGGAGAGGGCCGGAGTCGACCCTGCGCAG
CTCCATGTTCTTCAGACACGGCGCGTGCTTGAGTACGTTACTCTCGCGAA
CGCCTTCTTGCTGGTAGTGTCATTGGCTTGGCTGCACATTCGATTTGTAA
ATCCGAAGGGGGGGCAGAGATCAGCCGTCTCATGTCTACCCGATGCCCTG
GAGAGGGCCGGAGTCGACCCTGCGCAGCTCCATGTTCTTCAGATACACAT
ACGATTGCCACCTGACGATCGAGGCGGCGGTGCCATCAGCGCCAGCGGCA
CCGGGAGCCAAACCGTCCCGATTAATTCGAAAGTCAGAAGCAGCAGCGGT
AGAAGTAGCCACCGATCCTTCGACAGAAGCAAAGGCAACCTGGGAGAGGA
GTCCGATTCCTGCAGACATCGCAATGGCGATCGCGGCGGTACCGGTGACC
CCGCCGTGTGCAGCGACGGCGGCGTCGATGCTGCTGCCACTGCTCCCGCT
GGAATCGCTGTTGTCGGTGCTACCAGCGCCGCCGACAGCGGAGCCGGCGA
TGGACCACCTTTGGAGTTCGAATCTCCTCCGTCTACCCCGGAAATTTTCT
ACAGCATGAAGCTCGTCACGGGCAAGAATGCAGTGGGGACTCTTTCCGGG
CCCGGTACACTCGGCATCGAGAAGTACCACGGGGGAACGGGAGCGGGGGA
TAGTGGTGCAGGTGGGAATCGCGGAGACGGTGACATTGGAATCGGCATCG
GCGGCGGCGACGGCATCGGCGGAGGTGGTTTGGTTTGTGGCGGGGCGATG
GAAGTCAGGCACTCGACGGTAGTGCAGACGCTGGTCGATGCTTTTTCGTG
GGGGAAAGGAGGGGGGACGGCTGTACAGGCAGGAGCGGCATCGGCGGCTG
CAGCGGCGCCGAGTGGGGGGATACACATACGATTGCCACCTGACGATCGA
GGCGGCGGTGCCATCAGCGCCAGCGGCACCGGGAGCCAAACCGTCCCGAT
TAATTCGAAAGTCAGAAGCAGCAGCGGTAGAAGTAGCCACCGATCCTTCG
ACAGAAGCAAAGGCAACCTGGGAGAGGAGTCCGATTCCTGCAGACATCGC
AATGGCGATCGCGGCGGTACCGGTGACCCCGCCGTGTGCAGCGACGGCGG
CGTCGATGCTGCTGCCACTGCTCCCGCTGGAATCGCTGTTGTCGGTGCTA
CCAGCGCCGCCGACAGCGGAGCCGGCGATGGACCACCTTTGGAGTTCGAA
TCTCCTCCGTCTACCCCGGAAATTTTCTACAGCATGAAGCTCGTCACGGG
CAAGAATGCAGTGGGGACTCTTTCCGGGCCCGGTACACTCGGCATCGAGA
AGTACCACGGGGGAACGGGAGCGGGGGATAGTGGTGCAGGTGGGAATCGC
GGAGACGGTGACATTGGAATCGGCATCGGCGGCGGCGACGGCATCGGCGG
AGGTGGTTTGGTTTGTGGCGGGGCGATGGAAGTCAGGCACTCGACGGTAG
TGCAGACGCTGGTCGATGCTTTTTCGTGGGGGAAAGGAGGGGGGACGGCT
GTACAGGCAGGAGCGGCATCGGCGGCTGCAGCGGCGCCGAGTGGGGGG
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