mRNA_P-fluviatile_contig1.16.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.16.1
Unique NamemRNA_P-fluviatile_contig1.16.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.16.1 vs. uniprot
Match: A0A6H5KJ38_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ38_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.130e-24
Identity = 114/323 (35.29%), Postives = 141/323 (43.65%), Query Frame = 1 
Query:   49 SFRAPGQAMTVTTPPPDIGGLAAGCGGRSPVFFPALRIVMEDRTGGR-WLDSALELQCSCFEACKACRELAPVRLLVSDETPDHLWRQGAATRRAPLEARPRYGSSNSGDG------------------------GGGSSGYICDFSSSLSDVGVDRSSDSGSDIXXXXXXXS----SGFSWENGQSREDSSVCEGQRPSQRRRVRAPGCFFSFSSCRYLPPLRIVGMVWERHTLADIAFG-PELAXXXXXXGVIEPLHGLAWGEPGLRRLTLTS-NWNLPPXXXXXXXXNGDGSLNIDPGHNWPPLLEELVFGKYFDQAVNR 924
            + RA G A+  TT               S + F ALR+V+EDR GGR WL S  ELQ  CF+ACK CR++ PVRL VSD TP HLWR+     +A  E      +     G                        G GSSG  C                     XXXXXXX     S  SW         S+ E +   + R    P  +      R +PPLRI GMVWER  LA  +FG PEL         IEPLHG A     L+R+TL+S N +LP           DG +N      WPP L+EL FG+ F+  +N+
Sbjct:   64 AVRATGAAVRTTT---------------SALLFSALRMVLEDRVGGRGWLGSVRELQSVCFDACKECRKVVPVRLRVSDSTPGHLWRKETTADKAMAETTAEAVAELEPGGSXXXXXXXXXXXXXXXKRSVIESYGSGSSGSNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSECSW------SLPSLWEREAAIETRTDTIPSPYSPPD--RDVPPLRIAGMVWERSALAKASFGRPELPEAAFGMAAIEPLHGAACTTT-LKRITLSSKNSHLPTTVMLDAK---DGEIN------WPPSLKELTFGERFNAPINQ 353
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ38_9PHAE5.130e-2435.29Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:203032..204408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1377
Cds size1377
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815272.91045-CDS-P-fluviatile_contig1:203031..2044081622815272.91045-CDS-P-fluviatile_contig1:203031..204408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 203032..204408 +
1693561328.5132618-CDS-P-fluviatile_contig1:203031..2044081693561328.5132618-CDS-P-fluviatile_contig1:203031..204408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 203032..204408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.16.1prot_P-fluviatile_contig1.16.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 203032..204408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.16.1

>prot_P-fluviatile_contig1.16.1 ID=prot_P-fluviatile_contig1.16.1|Name=mRNA_P-fluviatile_contig1.16.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=459bp
SRGGFKSNGAEPPHVGSFRAPGQAMTVTTPPPDIGGLAAGCGGRSPVFFP
ALRIVMEDRTGGRWLDSALELQCSCFEACKACRELAPVRLLVSDETPDHL
WRQGAATRRAPLEARPRYGSSNSGDGGGGSSGYICDFSSSLSDVGVDRSS
DSGSDISSGLSDVSSGFSWENGQSREDSSVCEGQRPSQRRRVRAPGCFFS
FSSCRYLPPLRIVGMVWERHTLADIAFGPELAEITFGPGVIEPLHGLAWG
EPGLRRLTLTSNWNLPPPPAAAAAANGDGSLNIDPGHNWPPLLEELVFGK
YFDQAVNRIEFPASLRQLTFGEHFNHSVEGVAWPPNLQELAFGKNFNQGI
DRVSWPASLRRLSFGVHFDQPVAGVTWPASLQHLSFGYRFNQPIAGVFWP
ASLQSLSFGHDFNKAISRVAWPASLRRLSFGYDFDQPIADAALPPSLRSL
LFGYCFNHP
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mRNA from alignment at P-fluviatile_contig1:203032..204408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.16.1 ID=mRNA_P-fluviatile_contig1.16.1|Name=mRNA_P-fluviatile_contig1.16.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1377bp|location=Sequence derived from alignment at P-fluviatile_contig1:203032..204408+ (Porterinema fluviatile SAG_2381)
AGCCGCGGCGGATTCAAGAGCAACGGAGCAGAACCACCACACGTGGGCAG
CTTCCGGGCACCAGGGCAGGCTATGACGGTCACCACCCCGCCGCCTGACA
TCGGAGGGCTTGCCGCCGGTTGCGGCGGCAGAAGCCCTGTGTTCTTCCCC
GCGCTTCGCATCGTGATGGAGGACCGCACCGGGGGGCGTTGGCTGGATTC
GGCTTTGGAGCTACAGTGCTCGTGCTTCGAGGCATGCAAGGCCTGCCGCG
AGCTCGCACCGGTTCGCCTTCTCGTATCGGACGAGACGCCGGACCACCTT
TGGAGGCAGGGGGCGGCCACTCGGCGGGCGCCTTTGGAAGCAAGGCCGAG
GTACGGCAGTAGCAACAGTGGCGACGGTGGCGGCGGCAGCAGCGGCTACA
TTTGCGACTTTAGCAGCAGCCTCAGCGACGTGGGCGTCGATCGCAGCAGC
GACTCCGGTAGCGATATTAGCAGCGGCCTCAGCGACGTCAGCAGTGGCTT
CAGCTGGGAGAACGGCCAAAGTCGGGAAGATTCTTCCGTATGCGAAGGCC
AGCGACCGTCGCAGAGGAGGAGGGTGAGGGCTCCGGGGTGTTTTTTTTCG
TTCTCCTCGTGCAGGTATCTTCCACCTCTGAGGATCGTGGGCATGGTCTG
GGAGCGCCATACCCTCGCGGATATCGCGTTCGGGCCTGAACTGGCCGAGA
TAACCTTCGGACCCGGCGTCATTGAGCCGCTGCACGGCCTAGCCTGGGGT
GAACCAGGGCTCAGGAGGCTGACGCTAACCTCAAACTGGAACCTTCCGCC
GCCACCAGCGGCGGCGGCAGCGGCGAATGGTGACGGTAGTCTGAACATCG
ACCCTGGCCACAACTGGCCGCCCTTGTTAGAGGAACTGGTCTTCGGAAAA
TACTTCGACCAGGCTGTCAACCGGATCGAGTTCCCCGCGTCGCTTCGACA
GCTGACTTTCGGGGAGCATTTCAACCACAGCGTCGAAGGCGTCGCTTGGC
CCCCAAACCTCCAAGAACTCGCCTTTGGAAAGAACTTCAACCAAGGTATC
GACCGAGTCTCCTGGCCGGCATCCCTGCGGCGGCTCTCGTTCGGGGTCCA
CTTCGACCAGCCCGTCGCCGGAGTCACGTGGCCGGCGTCCCTGCAGCACC
TGTCATTCGGGTACCGCTTCAACCAGCCCATCGCCGGAGTGTTTTGGCCG
GCATCCCTCCAGAGCCTGTCGTTCGGGCATGACTTCAACAAGGCGATCTC
GCGGGTCGCTTGGCCGGCCTCCCTCCGTCGGCTCTCGTTCGGGTACGACT
TCGACCAGCCCATCGCCGACGCAGCGCTACCGCCGTCACTCCGCAGCCTG
TTGTTCGGGTACTGCTTCAACCATCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:203032..204408+

>mRNA_P-fluviatile_contig1.16.1 ID=mRNA_P-fluviatile_contig1.16.1|Name=mRNA_P-fluviatile_contig1.16.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2754bp|location=Sequence derived from alignment at P-fluviatile_contig1:203032..204408+ (Porterinema fluviatile SAG_2381)
AGCCGCGGCGGATTCAAGAGCAACGGAGCAGAACCACCACACGTGGGCAG
CTTCCGGGCACCAGGGCAGGCTATGACGGTCACCACCCCGCCGCCTGACA
TCGGAGGGCTTGCCGCCGGTTGCGGCGGCAGAAGCCCTGTGTTCTTCCCC
GCGCTTCGCATCGTGATGGAGGACCGCACCGGGGGGCGTTGGCTGGATTC
GGCTTTGGAGCTACAGTGCTCGTGCTTCGAGGCATGCAAGGCCTGCCGCG
AGCTCGCACCGGTTCGCCTTCTCGTATCGGACGAGACGCCGGACCACCTT
TGGAGGCAGGGGGCGGCCACTCGGCGGGCGCCTTTGGAAGCAAGGCCGAG
GTACGGCAGTAGCAACAGTGGCGACGGTGGCGGCGGCAGCAGCGGCTACA
TTTGCGACTTTAGCAGCAGCCTCAGCGACGTGGGCGTCGATCGCAGCAGC
GACTCCGGTAGCGATATTAGCAGCGGCCTCAGCGACGTCAGCAGTGGCTT
CAGCTGGGAGAACGGCCAAAGTCGGGAAGATTCTTCCGTATGCGAAGGCC
AGCGACCGTCGCAGAGGAGGAGGGTGAGGGCTCCGGGGTGTTTTTTTTCG
TTCTCCTCGTGCAGGTATCTTCCACCTCTGAGGATCGTGGGCATGGTCTG
GGAGCGCCATACCCTCGCGGATATCGCGTTCGGGCCTGAACTGGCCGAGA
TAACCTTCGGACCCGGCGTCATTGAGCCGCTGCACGGCCTAGCCTGGGGT
GAACCAGGGCTCAGGAGGCTGACGCTAACCTCAAACTGGAACCTTCCGCC
GCCACCAGCGGCGGCGGCAGCGGCGAATGGTGACGGTAGTCTGAACATCG
ACCCTGGCCACAACTGGCCGCCCTTGTTAGAGGAACTGGTCTTCGGAAAA
TACTTCGACCAGGCTGTCAACCGGATCGAGTTCCCCGCGTCGCTTCGACA
GCTGACTTTCGGGGAGCATTTCAACCACAGCGTCGAAGGCGTCGCTTGGC
CCCCAAACCTCCAAGAACTCGCCTTTGGAAAGAACTTCAACCAAGGTATC
GACCGAGTCTCCTGGCCGGCATCCCTGCGGCGGCTCTCGTTCGGGGTCCA
CTTCGACCAGCCCGTCGCCGGAGTCACGTGGCCGGCGTCCCTGCAGCACC
TGTCATTCGGGTACCGCTTCAACCAGCCCATCGCCGGAGTGTTTTGGCCG
GCATCCCTCCAGAGCCTGTCGTTCGGGCATGACTTCAACAAGGCGATCTC
GCGGGTCGCTTGGCCGGCCTCCCTCCGTCGGCTCTCGTTCGGGTACGACT
TCGACCAGCCCATCGCCGACGCAGCGCTACCGCCGTCACTCCGCAGCCTG
TTGTTCGGGTACTGCTTCAACCATCCCAGCCGCGGCGGATTCAAGAGCAA
CGGAGCAGAACCACCACACGTGGGCAGCTTCCGGGCACCAGGGCAGGCTA
TGACGGTCACCACCCCGCCGCCTGACATCGGAGGGCTTGCCGCCGGTTGC
GGCGGCAGAAGCCCTGTGTTCTTCCCCGCGCTTCGCATCGTGATGGAGGA
CCGCACCGGGGGGCGTTGGCTGGATTCGGCTTTGGAGCTACAGTGCTCGT
GCTTCGAGGCATGCAAGGCCTGCCGCGAGCTCGCACCGGTTCGCCTTCTC
GTATCGGACGAGACGCCGGACCACCTTTGGAGGCAGGGGGCGGCCACTCG
GCGGGCGCCTTTGGAAGCAAGGCCGAGGTACGGCAGTAGCAACAGTGGCG
ACGGTGGCGGCGGCAGCAGCGGCTACATTTGCGACTTTAGCAGCAGCCTC
AGCGACGTGGGCGTCGATCGCAGCAGCGACTCCGGTAGCGATATTAGCAG
CGGCCTCAGCGACGTCAGCAGTGGCTTCAGCTGGGAGAACGGCCAAAGTC
GGGAAGATTCTTCCGTATGCGAAGGCCAGCGACCGTCGCAGAGGAGGAGG
GTGAGGGCTCCGGGGTGTTTTTTTTCGTTCTCCTCGTGCAGGTATCTTCC
ACCTCTGAGGATCGTGGGCATGGTCTGGGAGCGCCATACCCTCGCGGATA
TCGCGTTCGGGCCTGAACTGGCCGAGATAACCTTCGGACCCGGCGTCATT
GAGCCGCTGCACGGCCTAGCCTGGGGTGAACCAGGGCTCAGGAGGCTGAC
GCTAACCTCAAACTGGAACCTTCCGCCGCCACCAGCGGCGGCGGCAGCGG
CGAATGGTGACGGTAGTCTGAACATCGACCCTGGCCACAACTGGCCGCCC
TTGTTAGAGGAACTGGTCTTCGGAAAATACTTCGACCAGGCTGTCAACCG
GATCGAGTTCCCCGCGTCGCTTCGACAGCTGACTTTCGGGGAGCATTTCA
ACCACAGCGTCGAAGGCGTCGCTTGGCCCCCAAACCTCCAAGAACTCGCC
TTTGGAAAGAACTTCAACCAAGGTATCGACCGAGTCTCCTGGCCGGCATC
CCTGCGGCGGCTCTCGTTCGGGGTCCACTTCGACCAGCCCGTCGCCGGAG
TCACGTGGCCGGCGTCCCTGCAGCACCTGTCATTCGGGTACCGCTTCAAC
CAGCCCATCGCCGGAGTGTTTTGGCCGGCATCCCTCCAGAGCCTGTCGTT
CGGGCATGACTTCAACAAGGCGATCTCGCGGGTCGCTTGGCCGGCCTCCC
TCCGTCGGCTCTCGTTCGGGTACGACTTCGACCAGCCCATCGCCGACGCA
GCGCTACCGCCGTCACTCCGCAGCCTGTTGTTCGGGTACTGCTTCAACCA
TCCC
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