mRNA_P-lacustris_contig1025.317.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1025.317.1
Unique NamemRNA_P-lacustris_contig1025.317.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1025.317.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 1.270e-67
Identity = 149/226 (65.93%), Postives = 166/226 (73.45%), Query Frame = 1 
Query:    4 VLGAPVTSRSN----GSGSSSPYDAWFQELLRSGCVAGLALLDPVQGRPLYENRVDERLPHPXXXXXXXXXXXXXXG----------RSKYGEEAIG--GGGGRDYRRYGLVSPSEGRQLVAAVKCLADDGDDHGSLYCK--HEQPLTCMGTPFRVFGGTPLGIYAVGPRRRVGLIVRALPRVGVLVVVYRRPHLPQQVVGEVEKFVDNFWAGVQDFGLR--LPPP 621
            +LGAP+TS       GSGS+S YDA FQ L+ SGC+AGLALLD  +GRPLYENR+D+RLP P XXXXXXXXXXXXX               G+E +G  GGG    +R GLVS SEG++LVAAVK L DD D      C+   EQPLTCMG PFRVFGGTPLGIYAVGP RRVGL+VRALPRVG LVVVYRRPHLPQQVVGEVEKFVD+FWAG Q   +R  LPPP
Sbjct:   65 MLGAPLTSGGXXXXAGSGSAS-YDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDD----AICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLPPP 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1025.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE1.270e-6765.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1025contigP-lacustris_contig1025:20454..23114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons3
Model size2000
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1025.317.1prot_P-lacustris_contig1025.317.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1025 21827..22297 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.124298-UTR-P-lacustris_contig1025:20453..218261622815297.124298-UTR-P-lacustris_contig1025:20453..21826Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 20454..21826 -
1693493458.5888455-UTR-P-lacustris_contig1025:20453..218261693493458.5888455-UTR-P-lacustris_contig1025:20453..21826Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 20454..21826 -
1622815297.1563878-UTR-P-lacustris_contig1025:22297..223781622815297.1563878-UTR-P-lacustris_contig1025:22297..22378Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 22298..22378 -
1693493458.6183937-UTR-P-lacustris_contig1025:22297..223781693493458.6183937-UTR-P-lacustris_contig1025:22297..22378Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 22298..22378 -
1622815297.164837-UTR-P-lacustris_contig1025:22799..231141622815297.164837-UTR-P-lacustris_contig1025:22799..23114Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 22800..23114 -
1693493458.6318269-UTR-P-lacustris_contig1025:22799..231141693493458.6318269-UTR-P-lacustris_contig1025:22799..23114Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 22800..23114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815297.1391168-CDS-P-lacustris_contig1025:21826..219321622815297.1391168-CDS-P-lacustris_contig1025:21826..21932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 21827..21932 -
1693493458.6020126-CDS-P-lacustris_contig1025:21826..219321693493458.6020126-CDS-P-lacustris_contig1025:21826..21932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 21827..21932 -
1622815297.148-CDS-P-lacustris_contig1025:22172..222971622815297.148-CDS-P-lacustris_contig1025:22172..22297Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 22173..22297 -
1693493458.6102316-CDS-P-lacustris_contig1025:22172..222971693493458.6102316-CDS-P-lacustris_contig1025:22172..22297Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 22173..22297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1025.317.1

>prot_P-lacustris_contig1025.317.1 ID=prot_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=77bp
MGTPFRVFGGTPLGIYAVGPRRRVGLIVRALPRVGVLVVVYRRPHLPQQV
VGEVEKFVDNFWAGVQDFGLRLPPPS*
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mRNA from alignment at P-lacustris_contig1025:20454..23114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2661bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
CAGGTACTCGGTGCTCCGGTAACCAGCAGAAGCAACGGCAGCGGCAGCAG
CAGCCCGTACGATGCGTGGTTTCAGGAGCTTCTCCGCAGCGGCTGCGTCG
CGGGGCTGGCCCTTCTGGATCCCGTGCAAGGGCGCCCACTGTACGAGAAT
CGCGTTGACGAGCGGTTGCCCCACCCTCCTCCTCCCCCCCCCCACCCCGC
CGCCGCAGCTGCCGCAACAGGAAGGAGCAAGTACGGCGAGGAAGCAATAG
GAGGGGGAGGAGGAAGAGACTATCGCCGCTACGGCTTAGTTTCTCCTTCT
GAAGGACGGCAGTTGGTGAGTGCGTCGATCACAGAGTCCGTCGTTCGTGG
GGTTGGTTTGGGCTGTGAGTACAACAGGCACTCTATTGCTGATGTTGCCT
TTTCTTGTTGACCCAACAGGCCAATCATGTTAGGCTATAAGCTGCCTTGG
GCTTGCCGCGGAGTGGATCGCGTGTCTTCTCGGGGAATGGTAGCACGAGG
AAGCGTTTTCTTCAGGGGGGAGAGAGAAAAGAAGGAGAGAGAGAGAAAAG
AAGGAGAGAGAAGAAGCTGACTTGAAACAAGTGAACTAGCTGTCTTTTTG
CCTTCAGGAGGTACTGGATGACAACTAACTACCTTGTTGGCTTCAGGAGT
ACTGGATGACAAGCAAAGGAAAGAACGAGTCACTGCGAAGACGACGACGT
AATTAACACACCACCACGACATCAACATAACGCAAGGTGGCCGCCGTGAA
ATGCTTGGCCGACGACGGTGACGACCACGGCAGCCTCTACTGCAAACACG
AACAACCCCTGACGTGCATGGGGACTCCGTTCCGAGTCTTCGGCGGGACG
CCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGCTTGATCGT
GCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAGGTACAACC
GAGCAGGGATTGCATTTACAAAGTAGATTGATCCAGACTGGTTTTACAGT
AGAGGAGCTCTGCGTGTACTCATGCAGGGCTGCGGGGTCTATATGGCATC
AGAAGTATTGCTCGTTGTGTTCGTCCATGCGTCGCAACGAGAAACCCTCG
CCTCTCCTAATTCTTGCACTCCATCTGGTCGTCTGGACGCGTGTGTACGT
GTTGTGTGCGTGTGTGCATGTGTTGGCGACAGACGGCCGCACCTTCCGCA
GCAGGTGGTGGGAGAGGTGGAGAAATTCGTGGATAACTTCTGGGCGGGCG
TCCAAGACTTTGGGCTTCGATTGCCGCCACCATCATGAATCATCATCATC
ATCATCATCATCAATGGCAGGAACGACTGCTGGCTCGTTCACGCCTACTG
CCATTTTCCACAGAAAGCAGCGGAAAGAAAACCGGAGGGGCGCGGCAGCG
GGCAGCGAGCAGCAGTTTTGATTCAAGTCATTTGCCCGTCACGAAGTGTT
GTTGTCAAGGAAATCGTGCCCACTCGTCGTCCTGAAGCTCGCGCAAGGAG
CTTGTTGTGGTCGTCGTTTTTTACAGGCGATCCTCATTCGAATGCGCGAG
CGAGCCGCGCGTCTCAAAATGAACGTTGATATCCGCTCCAGGCTTGTTGT
TGGTTGGGTTCCTGTGCAAGGTGACAAAGATGCATGCATGCATACATTCA
TTCATTCAAGACTCTGTTGCTGCTATTTTTTAGGGTGGTTTTGCTTTTTT
CGCAAACGGAGCCCCTCTGGCTCCGGGGCGGCGTTGTTTGTACATGTGCG
CGTCAAATATGGTGTCGGGTATCCACAAAACCACTAGACTCTCTGGCGGT
TCGAGGAAAAAACTTTAGCTGCTGCTACACTGCAAGGTGCTGGGACTCAG
AGAAAAAGTCTTTAGAGAGAGATAAAAACAGGAGGATAGCCTCATGTAGG
GAGCACGCCCGTATGTATGCCTACCGAATGACACACGCACGCTTGGCAGG
GCCCAAGGTACGAGGCACCGGTTTCCTTGTCGGCATGAATTCGTTGGTTG
GCTACAAATGGGAAGCGTAACGGTACACTGAGGGAGCTACATGCGGACAA
GAGACCATACATACCCATATGCATGTGCATGGAATAGCCCAAAGGGACCA
CCACGCACCTTGGGAAGTGGAAAAACAAGTGCAACAGTATATTGTATGGA
GGGCTACTGTATCGTCCCTTCCGGAAAACGAGGAGAGCTGCGGAGTCGGC
ATGATGGACGAATTTGACGAATAAGTTCGACTGCTGTCAGAGGGTTTCGA
GGGTACCAACCGCGGCGACCCGCTACTTGCGAGGGAGTTGAGTGTCGAGT
TCTGATAGAAAGCAAAAAAGAAGAGGTGTGTGTGCCTGGGTGCCCGAGAA
AATCGATGTGACACCGCATGGTGGCACGCCATGCATGTGCCACCATACGA
TGTCAAGGAAAGCAGCTAGATTGAAACAAAGGACACATATGTCCTAATAC
TTGGATAAGCCAAAACTTGGGGGGGGCTTATAGGTTTTAGTGTGGCCGCA
CTACATTTTTGTATTCAGACTTTGGGTCATCTATTATACAAGGAGTAGGT
TTTAGAAGGGACATGCCAAATCCGATACACTAAATATCATATAGGTTTTA
GAATAGCCATACTCAATCCTATACAAATGCCAAACCTGGGTAAGCCCAGC
GAAGGCAATGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1025:20454..23114-

>mRNA_P-lacustris_contig1025.317.1 ID=mRNA_P-lacustris_contig1025.317.1|Name=mRNA_P-lacustris_contig1025.317.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=462bp|location=Sequence derived from alignment at P-lacustris_contig1025:20454..23114- (Pleurocladia lacustris SAG_25_93)
ATGGGGACTCCGTTCCGAGTCTTCGGCGGGACGCCGCTCGGAATCTACGC
GGTGGGCCCCCGGAGACGGGTCGGCTTGATCGTGCGAGCTCTCCCTCGCG
TGGGCGTCCTGGTGGTGGTCTACAGATGGGGACTCCGTTCCGAGTCTTCG
GCGGGACGCCGCTCGGAATCTACGCGGTGGGCCCCCGGAGACGGGTCGGC
TTGATCGTGCGAGCTCTCCCTCGCGTGGGCGTCCTGGTGGTGGTCTACAG
ACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAATTCGTGG
ATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCGCCACCA
TCATGAACGGCCGCACCTTCCGCAGCAGGTGGTGGGAGAGGTGGAGAAAT
TCGTGGATAACTTCTGGGCGGGCGTCCAAGACTTTGGGCTTCGATTGCCG
CCACCATCATGA
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