mRNA_P-lacustris_contig1025.318.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1025.318.1
Unique NamemRNA_P-lacustris_contig1025.318.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1025.318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1025contigP-lacustris_contig1025:23736..30505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size503
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1025.318.1prot_P-lacustris_contig1025.318.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1025 23851..30471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.913262-UTR-P-lacustris_contig1025:23735..238501622815296.913262-UTR-P-lacustris_contig1025:23735..23850Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 23736..23850 -
1693493458.4458532-UTR-P-lacustris_contig1025:23735..238501693493458.4458532-UTR-P-lacustris_contig1025:23735..23850Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 23736..23850 -
1622815296.9492788-UTR-P-lacustris_contig1025:30471..305051622815296.9492788-UTR-P-lacustris_contig1025:30471..30505Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 30472..30505 -
1693493458.4694836-UTR-P-lacustris_contig1025:30471..305051693493458.4694836-UTR-P-lacustris_contig1025:30471..30505Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1025 30472..30505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.9241135-CDS-P-lacustris_contig1025:23850..241801622815296.9241135-CDS-P-lacustris_contig1025:23850..24180Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 23851..24180 -
1693493458.4542897-CDS-P-lacustris_contig1025:23850..241801693493458.4542897-CDS-P-lacustris_contig1025:23850..24180Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 23851..24180 -
1622815296.9389806-CDS-P-lacustris_contig1025:30447..304711622815296.9389806-CDS-P-lacustris_contig1025:30447..30471Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 30448..30471 -
1693493458.461794-CDS-P-lacustris_contig1025:30447..304711693493458.461794-CDS-P-lacustris_contig1025:30447..30471Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1025 30448..30471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1025.318.1

>prot_P-lacustris_contig1025.318.1 ID=prot_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
METADRHQRHATTVPGLAVGAYGSIASLVQPWHSRLQRSPRQRRGENHHD
GYHLLLQLWALKSVLSGLPNVPAPCPTSLGPSSLSLLRLPSYFFKLGIQN
SMLLLVHVSLSFCLARS*
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mRNA from alignment at P-lacustris_contig1025:23736..30505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1025.318.1 ID=mRNA_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6770bp|location=Sequence derived from alignment at P-lacustris_contig1025:23736..30505- (Pleurocladia lacustris SAG_25_93)
CTTGCCGAATGAACGATGGGCTCCAATCGCAAGAATGGAGACTGCTGATC
GTCATCAGGTACGTGTGGGTGTATTTGCCTACGCACATAGGAGCTTGTTG
CAGGAGCGTACGGTTGATGTGTTAATCGCTTCACTCCCAGCGGTCCTAAC
GGTTCGTTGGGGTCTCTCACTTGTCGAGTTGTGCGTCGGCCATGCTGTAT
ATTATACGGAGTAGTAGGTAGCTGGCAAGATATCTTGTTCGCTCTCTCTT
GACAGCTTCACTCCTCTTAGCACCACCCTTCTCTAGCTCCCTCCTGGCTG
GGCTACCATTCAACGAGGGGAGGGGCCTACAGTTTTAGGCAAGCCAACGT
TCAAATTCAAATCTTCATGGATAAAAAGAGTCGAGGTCCAACACATGTAC
AAATTTTATGACTACGGCGGTTGTTTGTACAGCAGTCGAGGTATTTAAAG
AAGGTATTGTTTGATATAATTACAGAGGTATTTAAAGAAGGTATTGTTTG
ATATAATCTAGGGTGTCAAGAATGGTGTGGCCTGGAGGCCGGGTCTTGGG
CCCTCGGAAGTGTAGCCTTGAGGCCGGGCCTTGGACCCTTGGAAATGGAT
CTTCTTGAGACCGTCTCTTGGAGACTACTATATATCTACTCCGCCGGAGT
GTTGATCACCGTAATCACACGAACGAAGAGGAATGAAAGATAAAAGGGAA
GTGGGCCCATAAAAGCACACGTCACACTTTACCACTCTCCTAAACCCCTG
CCCTCATTGGCCAACAAAAGGGGCCAAGCCAAAGCCTCCATTAATTGGTG
GAGATAACCCCTGTACTCAACTCATCATTCTTGCTCTCATCATACGTGAT
CCATCCTATTCCGCCGCATATTTCATACTTCATATGTACTCAACCGTTAC
CTCAAAGACCCACTGCTACAAGTCATCTAACATCCCCTGCTTGTAGCTGT
GTCTCTGATTCTCAACTCATTACAGCATATCAAGTAGCTCCGATATTCAA
ATATCACCTCAAATTCCCCGGCGAAACACAACATAGAACATTCCAAACTT
AGAACATGGGACTACTGCTGTAGAAACACATTGAATTCACACGCAGAAAC
ATAGCCATTGGGCTAGATGAACTTTCACACTTATACACAGTGCAATAGCC
ATTCAGACTAGATGGATTCCCAAATATCCAAATATAAATGCCAGCCATCG
GGCAACTACTTTATTATCCCCCTGCTCCGAGAAAAAAACTGTAAACACTC
CCGTTCAGGGCTACCGTTAGTATACTAGAAGGCGGGTAGGTTTGAGAAGC
AGCGTGTGCGTCAGTGGGTGAACGCTTGTGTGCTTCTCAACTAACTGCGT
TAAGCCGTATGTTGCGGGCACACCAGTGGTGCTGGCGGCAGCTGGATCGC
CAGCTGTGACTGTGGTGCACTTTGGTGCGCTTCCCAACTTTTTTTGTTTC
TCCATACACATACACACACCGAACTGGCTCTCGAGAGAGAGCTGGGGAAA
AAAGATGAAATAATGACATCCAAAAGCCCAAGGGGTCATTTCATATCAAA
TGCATAAGCCTAACGGGTCATCTAATGTCAAATGCAGAATACTTCAGGGA
GAGAGTGCACACGGTGCCGACGGGCCACGAAGGGGCTGTGTAGGTATCTC
CAAGCCTACACTACTGTAGGGCACAGTGGTGCTGTCAGGACAGGAGTAGT
AAGTAGTGTGTGTGTGCTCTACAGCAGTCAGTAGGGGCTGCTGGAACACC
TCTCTAAAAAAAGCACAGCAGCCAACAAGCGAAACACAGCAGCAGACATA
CTTACTTCCGTAAACAAGAAACAACTGCTGTACACAGCCCCTCGGTGGCC
CGGCATCAGCTGCAGCGCTTTGTAACTATTACTCTCTCTCTCTGCTCTGT
CTGTCCTCTGCAGCTCTCTCTCTCTCTCCTAGGCGCTTTGCACTCTCTCT
GCTCTGTCTGTCTGACTCTCTCTCTCTACAGCTCTTCTCCCTCTGTGCAT
CTCAGCAGCGATTTGTATACTCATCAGCAGCGCTTTACTCTCTCTCTCTC
TGCTCTGTCTGTCTGATGTCCTCTACATACAGCTCTCTCTCTCTCCTGTG
CGCTTTCTCTCTCTGTGCATCAGCAGCCTTCTAGTATACTCTCTCTCTCT
CTCTCTCTGCACTGCCTGTCCTCTTCTACAGCTCTCTCTCTCTCCTGTGC
GCTCTCCAGATCTGTCTCTGTCTGTGCGAAAAAATGCCTGGCGAACCAAC
TTATCAACTCCGCTCTATGCACACGTTTGACGTCCTTGCTCGCCCATTTC
GGCACGGGTTGCAGGATAACAAGCAGCAATCGCTCGAGCTAAATAGTCTC
GTCAGTTTAAGCCCTTGGTTGTGCCGATGTGGCGAGTTCGTCGCGTTGTG
AATCCAAACGTGGGTCTGTCTTTTGCGAGGACACACACACACAAAAAAGA
AGAAGGTTTCATCAGATTTGCCTTCGTATGGCAGGATTTTTTTGTTTTCA
CACCCCCCCACAGTCCCGCGATGTTGATATGAATTCGAAGCTATGCTTCT
CGTTATCTCGCGAAACATAACGTCTCGCTTCGCTCGACGGCTGCTTCTCA
ATATTAGTATAAAATATCAATATACAATTGTCAACCGTCGAGCAAATAAT
CCTTTGTTCCGCCCTACTCCGAGAAACAACGATCTTGTCTGACGTATTTC
AGCATCGTGCCATTGTATTCCGCATTTGCCTCCCATGATTTGATTGGGAA
ACAAATTCACCCACAACGATCCACCGGTTAGGCACGGTGATTCAATCGAA
GACATACATGTAGCTAAACTCACACACAGAAACCATAGCCACTCGCTCTG
TGATAGATTCCCAATTACCCGTGATACAAACGACAACTCAGCTTTCATAC
TTGTACCCCATATCTCATGATTTGATTTGAGAAACAAATGCCTCCTTGCG
TCGAGTGGGGGTACGGAGGTTGATGACGAAAAGCCGAATCCTGCATAATC
CCATTCGTTCAGAACAAAAACCCAAGAGTCCAAATGATCACGGGCCAGGG
AAAAGTGAAAACCGGCTCGGATCCAGAAATGAAAATATGTCAAAACAAAA
CTCCAAAAAAACAAAAGCCCATGCACAAGATTCCATTCCAAACAAAAACC
CAACCAAAAATAAAACAATACCGTAAGGCACAAAGGGAGCCAAGTCAAAC
ATCAATGACCTACTTTTTGCCGGTCCATCCATCCCAGCGGGCCAACTGCC
CCTTCCCCCAGCGATTAATCTCTTTTGCCTCCGCTACGGCCGCCTTTTGA
AAATTGTTTCCGGCGCCACGACTCGGGTTCCGACAGATTTTCTTTCCGCC
TGGGCAGGGAAGGGCAGATGTCACTCCCGAGAAGTTGACTCGCGGGCAAG
TTCGGAAGGGCAGGGCGAGTGGCATAATGAGAAATCCAAATTCTACATGG
CCTCAACCTGGCATGAATCGGTACTGCTGTGTATAGGCGCAAAACCAATG
TGTAACATTCCCCCGGTTGTGGACAGCAGTGTAGCGCCTGCTACAGTTTG
GAATACTAAACAAAACAACCATTTTACATTTGCAAGTATCGTAGTTGTGC
GACATACTGTAGGGGCGCGATGTCTTTGCACTCGATGTCATAGGATAAAC
ATTGCAGGATGTAAGTCAGGATGTAAGTCAAATGGCTACATTGTCTCGGG
CAAGTCTCCGATGCTGACAAGCAACCCTGACATAACCAGCCGTTCGGTTT
GGGCTGAACTCGTGATCTACACTCACAAGCGACCAGAGTGAAATCAGATT
CAAAACGTCCTCTGTTCACTCAAGATATCAGGCCAAAGCAAACACATCAA
ATCACAATTCAAGCAAGGATTGAATCCAAAACCAGCAAAGCAAAGCAAAA
CAAAGGATATGATCAAACAAATCAAAAACGTGCCTGGGGCGGGTTAAAAA
TCCTAGCAGCACGGTCCTTCACGCCTGGTCTCCATCTCATCCTCCTTCTC
GCTTCCCCAAAAACTCGGTTGAGCGTGGGGATTTCCCCCCTGTCAAACGG
GAACTGCTCCGTCCCCAAAACTGTTTCGTTGTTCGCGACTGCACCTCCGA
TGCCGCTTCTGATGATGTCGCTGCTGCCGTTGGCGTGGCTGCCGTAGGCG
CTGCTGCTCTCATTGTGGCTGCTGATGCTGGGGCTGCTGCTGTCGACGCT
AACCCCGGATGGAATGCGGTTTCTCGTGCCGTCGCTGCTGTCGATGACGT
TGCTGTCGACATTGATGTCTTCATCATCCGCGATTATTGTGCCCTCGGTC
CCTTCCGCCGATGCAGCAAAAGAAATACTGATGACACCCTCGGGGGGATA
GAAACGGCAGGGGACGGGGGGAGAGCAGGCTATGGAACAACGACACACGG
TGGAGGCACCGTATCCTGGGAGTAGGTCGTGGCTACCTCTTCCGACGCTG
CTTCCGAACAGGCTGCTGCTGCTGCCGCTGCTGCTGCCGCTTCCGCTTCC
GCCATCTTGCTTGCAACATGAGTATACCATGCTGACATGTGTTCGGAGAT
CATCCTTTCTCGTTCACACACCCCATGTCTCACACAGTTAACACGGGGAA
GGCCGGAGTGCCAAAGCTCGAAGCACCCCTTCTCGAAACAGACGTTCCAA
TCGACCCAAGCCTCATGCAACCACATATCTGTCGCCATGCACATGCTCCT
CCTCCATCTTGCTTGCTCGGTTGCAGTCGAGCCATTACCGTGCTGTGCCC
GCTGTTTCGCCCTCTACTCCTGCTGCTCCTTCTTCTCCGGGGGACCCCAC
TGTGAGATTTCCAAATATCGTGCGTGTACTATTCCCGAACGACGATGGCG
CGTCAGATCTAGAGTTGGCTTCAAGGATGGAGTCATTGGAGGGGGTCGAA
CCCTTCACACGCCCTCTCCAGTGGAAATAGCACACGCACCATATTGGCAA
AGCTCACAGTGGGGTCCCCCGGAGAAGAAGGAGCAGCAGAAGAAGAGGTC
GAAACAGCGGGCACAGCACGGTAATGGCTCGCCTGCAAAGCCGGCGGCTG
TTGAAGAAGGGGGGCTAGGCTGAAGTTGCTGCTGCTGGTGATGCTCCACG
TATTCGTCCTTCGGAAACCCACCACCGCCCACGATGTATTCACCCCCTTG
GTGATCGCTGAAGACCATGTTCGCTACCCGTAAGACGGAGGGAGGTTTCG
TCTATGAGGAGGATGACCTCCACCACCATCGAGTTTCCCTGCGCCGCTTC
CATTGCCGCGGCCTCCGTTGCTTTGATCCGGTCTCCTCCATGCTGATGTT
GTTGAAGCTGTTGTCGTCGAGGCTGTTGTGCACTGGCATGGTGTTGGGGC
TGCTGCCGGGGCTGCTTCCCACTGGCGTGGTGGCTGTCGCTGCCAGATGA
CAAAGCACCATAGCGAGCAACTTGCCGATATCCCAACCAGTACACTCGCT
GCTGGACATAGCAGTCCGCGTTGCTGTGAGAACCAGACTCATGGTAGTCA
CACCACTGTACGTGTTATCTTCTCTCCCTCTCCTGCTGCTGTCCTGGAGG
TCGCGGGCTGCAGTCGCCTCTTGGTCCTGCCCCCCCTCCAGATCGACTGG
AATTCGCCGCCACCATCGCATACCGTGCTCCGCCCGACTGGTCCTCTCTC
TCCTGCCTTTCTTTCTTCCTTTCGGCGGCACTGGTCACAACGCGTTGGAC
ATGCAAATCAGTCAGGTCCACCTCGGCTAACAGCTGCGACTTTTGCACCT
CAAACTCATCGAAATGAGCGCTAGCGATGTGACTATTGCACTGATGATCA
GAATCAGTTCTGCCGTGCACAGGAGCTTCCGTCTCAGGATCTTTGCTCTC
CCAAGAACACTCTAGGACCCTCATCCGGCTTTTGAGCGAGTCTACTCCAT
TGTTTCACGACTTCTTGCTTCTCGAACATAGCCGGATTTGCGAAGTGCTG
GGAAAAAACCTCCAACCCCTGCCCTGGACTACCTATAGAGAGGATCAGTT
CAAGCGAGGTGGAGTCCGTTGTCTTCGAAATCAGCAAAGACCACACCCTA
AACGCACCATCAACAGCCTCCTGCCCATATGTGTCGTACAGCTCAACATG
GTCAGTCTCAAATCCTGCCTTGATCCTGCTGTTCAACGCATCTAACAGCC
CTTGGTCAGCACAATACGAGCGAAGCTGGGTTCTACTTGATGTTTCCAGC
GTGAAATTTTCCATCAAACTCCTTCATACATGATGTTGAAGTGACTCGTA
CAACACCATCACGTCTCTCTCCTACAAACCTACGTGCATCACCGCCACTC
AAATCGTGCTGCCTCCCCATCGCAGCGTCACGCCACTACTGTTCCCGGGC
TTGCTGTGGGGGCGTACGGGTCGATCGCATCCCTCGTCCAGCCATGGCAT
AGTCGTCTCCAACGGAGCCCTCGTCAGCGGCGCGGCGAAAATCATCACGA
CGGCTATCATCTGCTGCTGCAGCTCTGGGCTCTGAAGTCTGTACTGTCTG
GGTTGCCAAACGTGCCAGCACCTTGTCCGACATCTCTTGGGCCTTCATCT
CTCTCTCTCCTTCGCCTCCCCTCTTATTTCTTCAAGCTTGGCATCCAAAA
CTCGATGCTGCTCTTGGTTCATGTTTCTCTCAGTTTTTGCCTCGCTCGTT
CTTGAAAAACGCACGACCCTATAAATGCGCACTCTCGCTCACCTCTAACT
CTTCCTTTAGAGTTGTTCGCTAGCGTGTTAAGAGCTTCGGAGGCGGGTGC
GCCCTTTGTCGCCAAATAGT
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Coding sequence (CDS) from alignment at P-lacustris_contig1025:23736..30505-

>mRNA_P-lacustris_contig1025.318.1 ID=mRNA_P-lacustris_contig1025.318.1|Name=mRNA_P-lacustris_contig1025.318.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=708bp|location=Sequence derived from alignment at P-lacustris_contig1025:23736..30505- (Pleurocladia lacustris SAG_25_93)
ATGGAGACTGCTGATCGTCATCAGATGGAGACTGCTGATCGTCATCAGCG
TCACGCCACTACTGTTCCCGGGCTTGCTGTGGGGGCGTACGGGTCGATCG
CATCCCTCGTCCAGCCATGGCATAGTCGTCTCCAACGGAGCCCTCGTCAG
CGGCGCGGCGAAAATCATCACGACGGCTATCATCTGCTGCTGCAGCTCTG
GGCTCTGAAGTCTGTACTGTCTGGGTTGCCAAACGTGCCAGCACCTTGTC
CGACATCTCTTGGGCCTTCATCTCTCTCTCTCCTTCGCCTCCCCTCTTAT
TTCTTCAAGCTTGGCATCCAAAACTCGATGCTGCTCTTGGTTCATGTTTC
TCTCAGTTTTTGCCTCGCTCGTTCTTGACGTCACGCCACTACTGTTCCCG
GGCTTGCTGTGGGGGCGTACGGGTCGATCGCATCCCTCGTCCAGCCATGG
CATAGTCGTCTCCAACGGAGCCCTCGTCAGCGGCGCGGCGAAAATCATCA
CGACGGCTATCATCTGCTGCTGCAGCTCTGGGCTCTGAAGTCTGTACTGT
CTGGGTTGCCAAACGTGCCAGCACCTTGTCCGACATCTCTTGGGCCTTCA
TCTCTCTCTCTCCTTCGCCTCCCCTCTTATTTCTTCAAGCTTGGCATCCA
AAACTCGATGCTGCTCTTGGTTCATGTTTCTCTCAGTTTTTGCCTCGCTC
GTTCTTGA
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