mRNA_P-lacustris_contig1024.315.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1024.315.1
Unique NamemRNA_P-lacustris_contig1024.315.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match: A0A6H5KJJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ2_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.440e-81
Identity = 125/147 (85.03%), Postives = 132/147 (89.80%), Query Frame = 1 
Query:  181 MWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDNQGSTDSPPHMEKTEEGGDNEEATLDASSAKLWKTESQGWGSFYAKKRP-GADPFSSQRSCWRKPRCKCDVTEYGDRYCEMTGVSPYAKKNLDSAPKP 618
            MWAEVIKKENA IGVPH+FFLNPNKLVFIARKPTEVDPRTY+ADSLST +QGS +SP  +   EEG  ++EATLDASSAKLWKTESQ WGSFYAKKRP G DPFSSQRSCWRKPR KCDVTEYGDRYCEMTGVSPYAKKNLDSA KP
Sbjct:    1 MWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQGSLESPSRIRLAEEGDKSDEATLDASSAKLWKTESQRWGSFYAKKRPPGVDPFSSQRSCWRKPRSKCDVTEYGDRYCEMTGVSPYAKKNLDSATKP 147
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BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match: D8LK45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK45_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.850e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:  172 RQAMWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDNQ 333
            RQAMWAEVIKKENA IGVPH+FFLNPNKLVFIARKPTEVDPRTY+ADSLST +Q
Sbjct:   14 RQAMWAEVIKKENATIGVPHRFFLNPNKLVFIARKPTEVDPRTYEADSLSTGHQ 67
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BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Match: A0A835Z8L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L4_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.610e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  172 RQAMWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLS 321
            R  MW EVI KENA IG PH FFL+P+KL F+ RKPTEVDPR   A++ +
Sbjct:    8 RNKMWVEVINKENAVIGRPHTFFLDPSKLCFLPRKPTEVDPRALAAEAAA 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1024.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJJ2_9PHAE1.440e-8185.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK45_ECTSI8.850e-2490.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8L4_9STRA5.610e-1162.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1024contigP-lacustris_contig1024:62941..64607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAM183 family
Ec32 orthologEc-06_008140.1
Exons3
Model size1132
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1024.315.1prot_P-lacustris_contig1024.315.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1024 63452..64427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.8399293-UTR-P-lacustris_contig1024:62940..634511622815296.8399293-UTR-P-lacustris_contig1024:62940..63451Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 62941..63451 -
1693493458.4051952-UTR-P-lacustris_contig1024:62940..634511693493458.4051952-UTR-P-lacustris_contig1024:62940..63451Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 62941..63451 -
1622815296.8797784-UTR-P-lacustris_contig1024:64427..646071622815296.8797784-UTR-P-lacustris_contig1024:64427..64607Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 64428..64607 -
1693493458.437497-UTR-P-lacustris_contig1024:64427..646071693493458.437497-UTR-P-lacustris_contig1024:64427..64607Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1024 64428..64607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.8511226-CDS-P-lacustris_contig1024:63451..635181622815296.8511226-CDS-P-lacustris_contig1024:63451..63518Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 63452..63518 -
1693493458.4139564-CDS-P-lacustris_contig1024:63451..635181693493458.4139564-CDS-P-lacustris_contig1024:63451..63518Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 63452..63518 -
1622815296.8598943-CDS-P-lacustris_contig1024:63761..639821622815296.8598943-CDS-P-lacustris_contig1024:63761..63982Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 63762..63982 -
1693493458.4212828-CDS-P-lacustris_contig1024:63761..639821693493458.4212828-CDS-P-lacustris_contig1024:63761..63982Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 63762..63982 -
1622815296.8686152-CDS-P-lacustris_contig1024:64274..644271622815296.8686152-CDS-P-lacustris_contig1024:64274..64427Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 64275..64427 -
1693493458.429343-CDS-P-lacustris_contig1024:64274..644271693493458.429343-CDS-P-lacustris_contig1024:64274..64427Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1024 64275..64427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1024.315.1

>prot_P-lacustris_contig1024.315.1 ID=prot_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=147bp
MWAEVIKKENARIGVPHKFFLNPNKLVFIARKPTEVDPRTYDADSLSTDN
QGSTDSPPHMEKTEEGGDNEEATLDASSAKLWKTESQGWGSFYAKKRPGA
DPFSSQRSCWRKPRCKCDVTEYGDRYCEMTGVSPYAKKNLDSAPKP*
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mRNA from alignment at P-lacustris_contig1024:62941..64607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1024.315.1 ID=mRNA_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1667bp|location=Sequence derived from alignment at P-lacustris_contig1024:62941..64607- (Pleurocladia lacustris SAG_25_93)
GAACAACCCCAACAAGGGGACCAAGCACGCAGCAATGCCATCCAGAAGCT
CCAGCGCTGTGATACGTGTTGCTGCGAGGGGTCCGCGTTTGACCGTGCAT
ACAATAGTGCATGGTTCTACAACGTGGACCTGCATCTGCAAGTACTTTTT
GTCAACTTTAATTTCTTCCTCCGCCAGGCGATGTGGGCAGAGGTGATTAA
AAAAGAGAACGCCAGGATCGGCGTGCCACACAAGTTCTTCCTCAACCCCA
ACAAGTTGGTGTTCATCGCCAGGAAGCCTACAGAGGTTGACCCGCGGACG
TATGACGCTGACTCTTTGTCGACAGATAACCAGGTAACAGCTTTTGCCTC
CGTCTCGTTCTATCGGTGTGTTGGCCGCAGCCTGTTTCAAAAACACGGAG
GTATTTCTTCCTTGCAATCCATTTTCCTGTTCAAAGAAGTACGAAGTTAC
ACAAATCAGACCGGGCGATCTGGTGCATGAGTAAGACAGTAGTACAAGAC
GTACACCGGAAATATATGTGTGTCAGGATACCGACTTGATACGAACTAGG
ATTTCCTGTTATGGCGACGTTGGTTTCACTATCTGTGTATGTAAACCCCG
AGCCCATACTGATTTGTTGTGCCAGGGCTCAACTGATTCTCCACCGCACA
TGGAAAAGACAGAAGAGGGCGGTGACAATGAGGAGGCCACCCTGGACGCC
AGTAGTGCCAAACTATGGAAAACGGAATCGCAGGGATGGGGCAGTTTTTA
CGCCAAGAAAAGGCCAGGGGCGGATCCTTTTAGCTCTCAGCGAAGTTGCT
GGAGAAAACCACGTTGCAAATGTGACGTTACGGAGTACGGGGACAGGTTC
GTCCACCTAGACAGCGGCGAGGTTCCGCCAACATGGCAAACGACGATCAA
ATATTTTTGGACGATTGTTGACAACCTTGTTTGTTTTGATATGGCTGATT
GTAAACAACCTTCGATTGTTTGGATATGGCGCTCGATAGAAATGGTGCTG
AGTGGCTTGAAATTTGTTGCGATACGTCAAAGCTGAACAACCTAATGCGG
CTCAGACATTGTGTGTTGCGCTCTCCTCTGCTTGCACAGGTACTGCGAGA
TGACAGGGGTCAGTCCCTACGCCAAAAAGAACTTGGACTCTGCGCCCAAA
CCCTGAAAAGCAGCAGGCGGGGGGGTGTTTTTTTCGTTCTCCTGTTCATG
AAGGGTTTGTGGGTGCTCCAGTCATTTTTCCAGCTTTCATCTACACGGGA
AATATGCAGGACCATGCCCTGGAAAGCTACCACCCAATGAACAATGCTTT
ATTGGTTGACTGGTATAGGTTGCACAGTACGCTTGAGCTTCGGGTCACGG
TGTCCTTCTACCTTTGGCAAATCACCGGGGTGGGATTTCGAAGCATAGAG
ACCGAGGCTTGCCTCACTCAGGATGTTTGTGTTCCAGAGCACTGTAAATA
TAGCTGATAACCGGCAGTACTCCAGCATCGGTTCTGGTCACCGCCAATGG
ACACAAGTGTGAAGTTCGCAAACCCAATAGAGTTGTATCGTATGGTTTAT
GTAAAGCAGCGACCAAATTTCTCATGATGCAACGGGGGGATTTGTATGTT
TAGCGCACGGACAACGCAACGAATGTTGAGCACAACGTCACTGCATTAGC
GTGGCTAGACTGACCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1024:62941..64607-

>mRNA_P-lacustris_contig1024.315.1 ID=mRNA_P-lacustris_contig1024.315.1|Name=mRNA_P-lacustris_contig1024.315.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=882bp|location=Sequence derived from alignment at P-lacustris_contig1024:62941..64607- (Pleurocladia lacustris SAG_25_93)
ATGTGGGCAGAGGTGATTAAAAAAGAGAACGCCAGGATCGGCGTGCCACA
CAAGTTCTTCCTCAACCCCAACAAGTTGGTGTTCATCGCCAGGAAGCCTA
CAGAGGTTGACCCGCGGACGTATGACGCTGACTCTTTGTCGACAGATAAC
CAGATGTGGGCAGAGGTGATTAAAAAAGAGAACGCCAGGATCGGCGTGCC
ACACAAGTTCTTCCTCAACCCCAACAAGTTGGTGTTCATCGCCAGGAAGC
CTACAGAGGTTGACCCGCGGACGTATGACGCTGACTCTTTGTCGACAGAT
AACCAGGGCTCAACTGATTCTCCACCGCACATGGAAAAGACAGAAGAGGG
CGGTGACAATGAGGAGGCCACCCTGGACGCCAGTAGTGCCAAACTATGGA
AAACGGAATCGCAGGGATGGGGCAGTTTTTACGCCAAGAAAAGGCCAGGG
GCGGATCCTTTTAGCTCTCAGCGAAGTTGCTGGAGAAAACCACGTTGCAA
ATGTGACGTTACGGAGTACGGGGACAGGGCTCAACTGATTCTCCACCGCA
CATGGAAAAGACAGAAGAGGGCGGTGACAATGAGGAGGCCACCCTGGACG
CCAGTAGTGCCAAACTATGGAAAACGGAATCGCAGGGATGGGGCAGTTTT
TACGCCAAGAAAAGGCCAGGGGCGGATCCTTTTAGCTCTCAGCGAAGTTG
CTGGAGAAAACCACGTTGCAAATGTGACGTTACGGAGTACGGGGACAGGT
ACTGCGAGATGACAGGGGTCAGTCCCTACGCCAAAAAGAACTTGGACTCT
GCGCCCAAACCCTGAGTACTGCGAGATGACAGGGGTCAGTCCCTACGCCA
AAAAGAACTTGGACTCTGCGCCCAAACCCTGA
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