mRNA_P-lacustris_contig1023.309.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1023.309.1
Unique NamemRNA_P-lacustris_contig1023.309.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1023.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1023contigP-lacustris_contig1023:67211..67803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size593
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1023.309.1prot_P-lacustris_contig1023.309.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1023 67351..67773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815294.529073-UTR-P-lacustris_contig1023:67210..673501622815294.529073-UTR-P-lacustris_contig1023:67210..67350Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 67211..67350 +
1693493457.3605907-UTR-P-lacustris_contig1023:67210..673501693493457.3605907-UTR-P-lacustris_contig1023:67210..67350Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 67211..67350 +
1622815294.54607-UTR-P-lacustris_contig1023:67773..678031622815294.54607-UTR-P-lacustris_contig1023:67773..67803Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 67774..67803 +
1693493457.378412-UTR-P-lacustris_contig1023:67773..678031693493457.378412-UTR-P-lacustris_contig1023:67773..67803Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 67774..67803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815294.5376704-CDS-P-lacustris_contig1023:67350..677731622815294.5376704-CDS-P-lacustris_contig1023:67350..67773Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 67351..67773 +
1693493457.370874-CDS-P-lacustris_contig1023:67350..677731693493457.370874-CDS-P-lacustris_contig1023:67350..67773Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 67351..67773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1023.309.1

>prot_P-lacustris_contig1023.309.1 ID=prot_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=141bp
MAGEWPVPGAAAPGGAGHWCWPRLVFPCRAGGGNGHDVGWLCISAATSAS
GSGRGGSGCVFAFAAEGRWRRSVVVFFVAESAVATAAEWSVGWEWSRRRG
RVLKKRRRRRWQHSFLLQSFRLIPTTTPSSPQKQVTTAQK*
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mRNA from alignment at P-lacustris_contig1023:67211..67803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1023.309.1 ID=mRNA_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=593bp|location=Sequence derived from alignment at P-lacustris_contig1023:67211..67803+ (Pleurocladia lacustris SAG_25_93)
CGATAAGGACGGCGCCGACGGCGGCGCCTGGCGGTAGTTTCCCCCGTTGC
GACGGCTGGGGGTGGCTGGCACAAGCGGCTGCACCAGGAGCGGCGACTGT
GACGGCGGCGGCGTACGGCGGTAGTGTTCCACCTGTTGCGATGGCCGGGG
AATGGCCGGTGCCTGGTGCGGCTGCGCCAGGAGGAGCAGGACATTGGTGT
TGGCCGCGGTTGGTTTTTCCCTGCCGCGCAGGCGGCGGCAACGGCCATGA
TGTCGGGTGGTTGTGTATTTCGGCTGCCACATCCGCGAGTGGCAGTGGCC
GCGGTGGCAGTGGTTGTGTTTTCGCTTTCGCGGCGGAGGGGCGGTGGCGA
CGTTCGGTGGTTGTCTTTTTCGTTGCTGAATCGGCGGTGGCGACAGCGGC
GGAATGGAGTGTTGGATGGGAGTGGTCACGGCGGAGAGGGCGTGTCCTGA
AGAAGCGAAGACGCAGAAGGTGGCAGCACTCTTTCCTTTTGCAATCGTTT
CGTTTAATCCCCACAACAACCCCTTCCAGCCCCCAAAAGCAGGTTACAAC
AGCACAAAAGTAGCGATAAGTGCTGGGTGTTGACGGATTGGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig1023:67211..67803+

>mRNA_P-lacustris_contig1023.309.1 ID=mRNA_P-lacustris_contig1023.309.1|Name=mRNA_P-lacustris_contig1023.309.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=846bp|location=Sequence derived from alignment at P-lacustris_contig1023:67211..67803+ (Pleurocladia lacustris SAG_25_93)
ATGGCCGGGGAATGGCCGGTGCCTGGTGCGGCTGCGCCAGGAGGAGCAGG
ACATTGGTGTTGGCCGCGGTTGGTTTTTCCCTGCCGCGCAGGCGGCGGCA
ACGGCCATGATGTCGGGTGGTTGTGTATTTCGGCTGCCACATCCGCGAGT
GGCAGTGGCCGCGGTGGCAGTGGTTGTGTTTTCGCTTTCGCGGCGGAGGG
GCGGTGGCGACGTTCGGTGGTTGTCTTTTTCGTTGCTGAATCGGCGGTGG
CGACAGCGGCGGAATGGAGTGTTGGATGGGAGTGGTCACGGCGGAGAGGG
CGTGTCCTGAAGAAGCGAAGACGCAGAAGGTGGCAGCACTCTTTCCTTTT
GCAATCGTTTCGTTTAATCCCCACAACAACCCCTTCCAGCCCCCAAAAGC
AGGTTACAACAGCACAAAAGTAGATGGCCGGGGAATGGCCGGTGCCTGGT
GCGGCTGCGCCAGGAGGAGCAGGACATTGGTGTTGGCCGCGGTTGGTTTT
TCCCTGCCGCGCAGGCGGCGGCAACGGCCATGATGTCGGGTGGTTGTGTA
TTTCGGCTGCCACATCCGCGAGTGGCAGTGGCCGCGGTGGCAGTGGTTGT
GTTTTCGCTTTCGCGGCGGAGGGGCGGTGGCGACGTTCGGTGGTTGTCTT
TTTCGTTGCTGAATCGGCGGTGGCGACAGCGGCGGAATGGAGTGTTGGAT
GGGAGTGGTCACGGCGGAGAGGGCGTGTCCTGAAGAAGCGAAGACGCAGA
AGGTGGCAGCACTCTTTCCTTTTGCAATCGTTTCGTTTAATCCCCACAAC
AACCCCTTCCAGCCCCCAAAAGCAGGTTACAACAGCACAAAAGTAG
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