mRNA_P-lacustris_contig1023.308.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1023.308.1
Unique NamemRNA_P-lacustris_contig1023.308.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1023.308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1023contigP-lacustris_contig1023:56971..57360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815294.4929378-CDS-P-lacustris_contig1023:56970..573601622815294.4929378-CDS-P-lacustris_contig1023:56970..57360Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 56971..57360 +
1693493457.3514102-CDS-P-lacustris_contig1023:56970..573601693493457.3514102-CDS-P-lacustris_contig1023:56970..57360Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 56971..57360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1023.308.1prot_P-lacustris_contig1023.308.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1023 56971..57360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1023.308.1

>prot_P-lacustris_contig1023.308.1 ID=prot_P-lacustris_contig1023.308.1|Name=mRNA_P-lacustris_contig1023.308.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=130bp
GILICSAHCSAGPRWPWGRWCVVCGASGALRPVHSKKFSHKRTRTKIQKK
PFAVTVEMTPAAILTSCDVENSTLLLFGWITNTCAARSMENCLRPKTLGD
CLYSTSISDFVEVGVGISYASAGKNTPED*
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mRNA from alignment at P-lacustris_contig1023:56971..57360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1023.308.1 ID=mRNA_P-lacustris_contig1023.308.1|Name=mRNA_P-lacustris_contig1023.308.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=390bp|location=Sequence derived from alignment at P-lacustris_contig1023:56971..57360+ (Pleurocladia lacustris SAG_25_93)
GGCATTCTCATCTGTAGCGCTCATTGTTCTGCTGGACCACGCTGGCCGTG
GGGCAGGTGGTGTGTTGTGTGTGGCGCCAGCGGCGCCTTGCGCCCTGTTC
ACTCAAAAAAATTCTCCCACAAAAGAACCCGAACCAAAATCCAGAAGAAG
CCATTCGCGGTGACGGTTGAAATGACGCCTGCCGCTATCTTGACGTCGTG
TGATGTTGAAAACTCCACACTATTGTTGTTCGGCTGGATCACAAACACTT
GTGCAGCAAGATCCATGGAAAATTGTCTCCGTCCGAAAACTCTGGGAGAT
TGCCTATACTCCACAAGTATAAGTGATTTTGTTGAGGTCGGCGTTGGCAT
ATCATATGCCTCTGCGGGGAAAAACACGCCCGAAGATTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1023:56971..57360+

>mRNA_P-lacustris_contig1023.308.1 ID=mRNA_P-lacustris_contig1023.308.1|Name=mRNA_P-lacustris_contig1023.308.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=780bp|location=Sequence derived from alignment at P-lacustris_contig1023:56971..57360+ (Pleurocladia lacustris SAG_25_93)
GGCATTCTCATCTGTAGCGCTCATTGTTCTGCTGGACCACGCTGGCCGTG
GGGCAGGTGGTGTGTTGTGTGTGGCGCCAGCGGCGCCTTGCGCCCTGTTC
ACTCAAAAAAATTCTCCCACAAAAGAACCCGAACCAAAATCCAGAAGAAG
CCATTCGCGGTGACGGTTGAAATGACGCCTGCCGCTATCTTGACGTCGTG
TGATGTTGAAAACTCCACACTATTGTTGTTCGGCTGGATCACAAACACTT
GTGCAGCAAGATCCATGGAAAATTGTCTCCGTCCGAAAACTCTGGGAGAT
TGCCTATACTCCACAAGTATAAGTGATTTTGTTGAGGTCGGCGTTGGCAT
ATCATATGCCTCTGCGGGGAAAAACACGCCCGAAGATTAGGGCATTCTCA
TCTGTAGCGCTCATTGTTCTGCTGGACCACGCTGGCCGTGGGGCAGGTGG
TGTGTTGTGTGTGGCGCCAGCGGCGCCTTGCGCCCTGTTCACTCAAAAAA
ATTCTCCCACAAAAGAACCCGAACCAAAATCCAGAAGAAGCCATTCGCGG
TGACGGTTGAAATGACGCCTGCCGCTATCTTGACGTCGTGTGATGTTGAA
AACTCCACACTATTGTTGTTCGGCTGGATCACAAACACTTGTGCAGCAAG
ATCCATGGAAAATTGTCTCCGTCCGAAAACTCTGGGAGATTGCCTATACT
CCACAAGTATAAGTGATTTTGTTGAGGTCGGCGTTGGCATATCATATGCC
TCTGCGGGGAAAAACACGCCCGAAGATTAG
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