mRNA_P-lacustris_contig1023.306.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1023.306.1
Unique NamemRNA_P-lacustris_contig1023.306.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1023.306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1023contigP-lacustris_contig1023:46736..47271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size536
Cds size384
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815294.4208746-UTR-P-lacustris_contig1023:46735..468871622815294.4208746-UTR-P-lacustris_contig1023:46735..46887Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 46736..46887 +
1693493457.308737-UTR-P-lacustris_contig1023:46735..468871693493457.308737-UTR-P-lacustris_contig1023:46735..46887Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1023 46736..46887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815294.4328358-CDS-P-lacustris_contig1023:46887..472711622815294.4328358-CDS-P-lacustris_contig1023:46887..47271Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 46888..47271 +
1693493457.3178897-CDS-P-lacustris_contig1023:46887..472711693493457.3178897-CDS-P-lacustris_contig1023:46887..47271Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1023 46888..47271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1023.306.1prot_P-lacustris_contig1023.306.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1023 46888..47271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1023.306.1

>prot_P-lacustris_contig1023.306.1 ID=prot_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=128bp
MFCTSIHGHEECTAISLPCVCRRYDSRCCYQTGTAIGSRSLHGNVLHTFS
PQRMLRFRLPSVGTSIHFTSQIGSRCHFNVHFEVFNINHLQGTSQMAVFL
RCFDETPDGRKKKTCVMLCLIKFSLWQ*
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mRNA from alignment at P-lacustris_contig1023:46736..47271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1023.306.1 ID=mRNA_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=536bp|location=Sequence derived from alignment at P-lacustris_contig1023:46736..47271+ (Pleurocladia lacustris SAG_25_93)
GTCCTGAAGCACGCGGCCAGTGTCGGCGCTGAAGAACGCAACCAAAAGCC
AGAGTAAAACAAAAAAAAATGAGGGACGGGGGGGACGCGTGAAGTTAAGG
CACAGAGTCAAAACCAGTATTCAACAGAAAAGGAAAGCGTGTTGGCACGG
ACATGTTTTGTACTTCCATTCACGGACATGAAGAATGCACGGCCATAAGT
CTTCCTTGTGTTTGTCGCCGGTATGATTCTCGCTGTTGTTACCAAACAGG
CACTGCAATCGGTAGCAGATCTCTGCATGGAAATGTTTTACACACTTTTT
CACCTCAACGGATGTTGAGGTTCCGGCTGCCCAGCGTAGGGACTTCTATA
CATTTCACAAGTCAAATAGGGAGCAGGTGTCATTTTAACGTTCACTTTGA
AGTCTTCAACATAAACCACCTGCAGGGGACGTCTCAGATGGCAGTCTTCC
TTCGATGTTTTGACGAAACTCCTGACGGGCGGAAAAAAAAAACTTGCGTG
ATGCTGTGTCTTATTAAGTTTTCGTTGTGGCAATGA
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Coding sequence (CDS) from alignment at P-lacustris_contig1023:46736..47271+

>mRNA_P-lacustris_contig1023.306.1 ID=mRNA_P-lacustris_contig1023.306.1|Name=mRNA_P-lacustris_contig1023.306.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=768bp|location=Sequence derived from alignment at P-lacustris_contig1023:46736..47271+ (Pleurocladia lacustris SAG_25_93)
ATGTTTTGTACTTCCATTCACGGACATGAAGAATGCACGGCCATAAGTCT
TCCTTGTGTTTGTCGCCGGTATGATTCTCGCTGTTGTTACCAAACAGGCA
CTGCAATCGGTAGCAGATCTCTGCATGGAAATGTTTTACACACTTTTTCA
CCTCAACGGATGTTGAGGTTCCGGCTGCCCAGCGTAGGGACTTCTATACA
TTTCACAAGTCAAATAGGGAGCAGGTGTCATTTTAACGTTCACTTTGAAG
TCTTCAACATAAACCACCTGCAGGGGACGTCTCAGATGGCAGTCTTCCTT
CGATGTTTTGACGAAACTCCTGACGGGCGGAAAAAAAAAACTTGCGTGAT
GCTGTGTCTTATTAAGTTTTCGTTGTGGCAATGAATGTTTTGTACTTCCA
TTCACGGACATGAAGAATGCACGGCCATAAGTCTTCCTTGTGTTTGTCGC
CGGTATGATTCTCGCTGTTGTTACCAAACAGGCACTGCAATCGGTAGCAG
ATCTCTGCATGGAAATGTTTTACACACTTTTTCACCTCAACGGATGTTGA
GGTTCCGGCTGCCCAGCGTAGGGACTTCTATACATTTCACAAGTCAAATA
GGGAGCAGGTGTCATTTTAACGTTCACTTTGAAGTCTTCAACATAAACCA
CCTGCAGGGGACGTCTCAGATGGCAGTCTTCCTTCGATGTTTTGACGAAA
CTCCTGACGGGCGGAAAAAAAAAACTTGCGTGATGCTGTGTCTTATTAAG
TTTTCGTTGTGGCAATGA
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