mRNA_P-lacustris_contig102.283.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig102.283.1
Unique NamemRNA_P-lacustris_contig102.283.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig102.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig102contigP-lacustris_contig102:256567..257301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815289.2408895-CDS-P-lacustris_contig102:256567..2566521622815289.2408895-CDS-P-lacustris_contig102:256567..256652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 256568..256652 -
1693493453.5902061-CDS-P-lacustris_contig102:256567..2566521693493453.5902061-CDS-P-lacustris_contig102:256567..256652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 256568..256652 -
1622815289.2518215-CDS-P-lacustris_contig102:257212..2573011622815289.2518215-CDS-P-lacustris_contig102:257212..257301Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 257213..257301 -
1693493453.6080632-CDS-P-lacustris_contig102:257212..2573011693493453.6080632-CDS-P-lacustris_contig102:257212..257301Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig102 257213..257301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig102.283.1prot_P-lacustris_contig102.283.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig102 256568..257301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig102.283.1

>prot_P-lacustris_contig102.283.1 ID=prot_P-lacustris_contig102.283.1|Name=mRNA_P-lacustris_contig102.283.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=58bp
KLEVTRYSTLPQLDKALRKVEANLELESERVSPSGNNNKVLQQHPSATSG
VVNTMLTY
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mRNA from alignment at P-lacustris_contig102:256567..257301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig102.283.1 ID=mRNA_P-lacustris_contig102.283.1|Name=mRNA_P-lacustris_contig102.283.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=735bp|location=Sequence derived from alignment at P-lacustris_contig102:256567..257301- (Pleurocladia lacustris SAG_25_93)
AAGCTGGAGGTGACGCGTTATTCGACCTTACCGCAGCTGGACAAAGCTCT
ACGGAAAGTGGAGGCCAACCTCGAGTTGGAGTCCGAAAGGTAATTGCTGT
TGATTCATTAGGATAGTAGCACGACGAAATACGAAGTGACTTCGGCCCAT
GTGTTGATATGGCACGAGTGGTTTAGGTTTTCTATGCATTCCCGAACGCT
CGTTGTATTCACTCCTTCCTTAGGCTGTCGAAAACGGAGCTCCGAAAATC
AAAATTGAAAAATCGAAATCAAAATTGTATCTGACTGGTCGTTTCACATC
ACACGCCTCCATACGTCTTGTTATATACTGGGGACACAAAGAAGTAGCTG
GGGACTTTTGAAATCAAATCCGAATCCCCAACGTGCAATTTTGATTGGTA
TGCTTTCCATGGGACGCCTCCCCAATTATGATTTTGATTTGATTTCGAGA
ACGTCATTAACACTGGCCCGTACATTTGTTTTGGCACTAAACTTTTGAAA
AGGTCGAATTACCCCTCCTTAGTTGGCCCCCGTGGAACCGATTTCCCCAA
ACTCTCGTACACTTTCGACGCAAGTGTTTCTCTCCTGTCCGCTATGATAT
CAATGGCTTCTCCTCTTCCCCTGCGCTGTTGCTGTCGGATGGTGGACAGA
GTATCGCCCAGTGGCAACAACAACAAGGTCCTGCAGCAGCACCCTTCCGC
TACCAGCGGGGTTGTGAACACGATGCTGACATATT
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Coding sequence (CDS) from alignment at P-lacustris_contig102:256567..257301-

>mRNA_P-lacustris_contig102.283.1 ID=mRNA_P-lacustris_contig102.283.1|Name=mRNA_P-lacustris_contig102.283.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=348bp|location=Sequence derived from alignment at P-lacustris_contig102:256567..257301- (Pleurocladia lacustris SAG_25_93)
AAGCTGGAGGTGACGCGTTATTCGACCTTACCGCAGCTGGACAAAGCTCT
ACGGAAAGTGGAGGCCAACCTCGAGTTGGAGTCCGAAAGAAGCTGGAGGT
GACGCGTTATTCGACCTTACCGCAGCTGGACAAAGCTCTACGGAAAGTGG
AGGCCAACCTCGAGTTGGAGTCCGAAAGAGTATCGCCCAGTGGCAACAAC
AACAAGGTCCTGCAGCAGCACCCTTCCGCTACCAGCGGGGTTGTGAACAC
GATGCTGACATATAGTATCGCCCAGTGGCAACAACAACAAGGTCCTGCAG
CAGCACCCTTCCGCTACCAGCGGGGTTGTGAACACGATGCTGACATAT
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