mRNA_P-lacustris_contig1015.238.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1015.238.1
Unique NamemRNA_P-lacustris_contig1015.238.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1015.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1015contigP-lacustris_contig1015:45929..46525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.5634365-UTR-P-lacustris_contig1015:45928..460841622815285.5634365-UTR-P-lacustris_contig1015:45928..46084Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1015 45929..46084 +
1693493451.1296806-UTR-P-lacustris_contig1015:45928..460841693493451.1296806-UTR-P-lacustris_contig1015:45928..46084Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1015 45929..46084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.5730317-CDS-P-lacustris_contig1015:46084..465251622815285.5730317-CDS-P-lacustris_contig1015:46084..46525Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 46085..46525 +
1693493451.1391344-CDS-P-lacustris_contig1015:46084..465251693493451.1391344-CDS-P-lacustris_contig1015:46084..46525Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1015 46085..46525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1015.238.1prot_P-lacustris_contig1015.238.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1015 46085..46525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1015.238.1

>prot_P-lacustris_contig1015.238.1 ID=prot_P-lacustris_contig1015.238.1|Name=mRNA_P-lacustris_contig1015.238.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=147bp
MSSSLSTNSCVNILTGQSKNPQKAAMYAYLGWIHHVQGSLRGASRILQYS
EYTCTRIWGRVEKQRMRVRVCLSATHLTALSRMLRAHKWFLAAAGPPAAV
HLPKFFFCILLSPNWLSTESWKKNMPKKSDSELGKKRGIDKKGYTLW
back to top

mRNA from alignment at P-lacustris_contig1015:45929..46525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1015.238.1 ID=mRNA_P-lacustris_contig1015.238.1|Name=mRNA_P-lacustris_contig1015.238.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=597bp|location=Sequence derived from alignment at P-lacustris_contig1015:45929..46525+ (Pleurocladia lacustris SAG_25_93)
GTGATGCCAACACCTTTAACACATGCTTTTCCTACATCGTGCGCCGAGAA
GGCTCTTTGGGTTGCTGCGTTAGTGTCTCACGATCATAATATAGAAACAC
TAGGATTTTTTCATTGTTCTGTACTATGTACAAGATGAATTTCAGGCATC
TAGAGAATGTCATCATCACTTTCTACTAATTCTTGCGTGAATATCCTCAC
AGGTCAATCCAAGAACCCCCAAAAAGCCGCCATGTATGCATACCTAGGCT
GGATCCACCATGTTCAGGGGAGTCTTCGGGGTGCAAGTCGAATACTCCAA
TATTCCGAGTATACTTGTACTAGAATTTGGGGTAGGGTTGAGAAGCAGCG
TATGCGTGTCAGGGTGTGCTTGTCCGCTACTCATCTAACTGCGTTAAGCC
GTATGTTGCGGGCACACAAGTGGTTCCTGGCGGCAGCAGGACCGCCAGCT
GCGGTGCACTTGCCCAAATTTTTTTTCTGCATACTGCTGTCGCCGAACTG
GCTCTCCACAGAGAGCTGGAAAAAAAATATGCCGAAAAAGTCAGACAGTG
AGCTGGGAAAAAAAAGGGGAATCGACAAAAAAGGGTATACCCTGTGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1015:45929..46525+

>mRNA_P-lacustris_contig1015.238.1 ID=mRNA_P-lacustris_contig1015.238.1|Name=mRNA_P-lacustris_contig1015.238.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=882bp|location=Sequence derived from alignment at P-lacustris_contig1015:45929..46525+ (Pleurocladia lacustris SAG_25_93)
ATGTCATCATCACTTTCTACTAATTCTTGCGTGAATATCCTCACAGGTCA
ATCCAAGAACCCCCAAAAAGCCGCCATGTATGCATACCTAGGCTGGATCC
ACCATGTTCAGGGGAGTCTTCGGGGTGCAAGTCGAATACTCCAATATTCC
GAGTATACTTGTACTAGAATTTGGGGTAGGGTTGAGAAGCAGCGTATGCG
TGTCAGGGTGTGCTTGTCCGCTACTCATCTAACTGCGTTAAGCCGTATGT
TGCGGGCACACAAGTGGTTCCTGGCGGCAGCAGGACCGCCAGCTGCGGTG
CACTTGCCCAAATTTTTTTTCTGCATACTGCTGTCGCCGAACTGGCTCTC
CACAGAGAGCTGGAAAAAAAATATGCCGAAAAAGTCAGACAGTGAGCTGG
GAAAAAAAAGGGGAATCGACAAAAAAGGGTATACCCTGTGGATGTCATCA
TCACTTTCTACTAATTCTTGCGTGAATATCCTCACAGGTCAATCCAAGAA
CCCCCAAAAAGCCGCCATGTATGCATACCTAGGCTGGATCCACCATGTTC
AGGGGAGTCTTCGGGGTGCAAGTCGAATACTCCAATATTCCGAGTATACT
TGTACTAGAATTTGGGGTAGGGTTGAGAAGCAGCGTATGCGTGTCAGGGT
GTGCTTGTCCGCTACTCATCTAACTGCGTTAAGCCGTATGTTGCGGGCAC
ACAAGTGGTTCCTGGCGGCAGCAGGACCGCCAGCTGCGGTGCACTTGCCC
AAATTTTTTTTCTGCATACTGCTGTCGCCGAACTGGCTCTCCACAGAGAG
CTGGAAAAAAAATATGCCGAAAAAGTCAGACAGTGAGCTGGGAAAAAAAA
GGGGAATCGACAAAAAAGGGTATACCCTGTGG
back to top