mRNA_P-lacustris_contig1014.231.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1014.231.1
Unique NamemRNA_P-lacustris_contig1014.231.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Match: D7G7Z4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.760e-27
Identity = 78/115 (67.83%), Postives = 83/115 (72.17%), Query Frame = 1 
Query:  535 MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGRS--GDNSGEEATDDESEFSSVDGRTSPSQ-PGAWGAATAGEGARG-HFNPAGPHGFAVAAAAGLN 867
            MVPGAGV RHGKRKAEHER+ S+SKKAME Y G AG      G+  GGGRS  GDNSGEEATDDESEFSSVDGRTSPSQ PGAWG A   +   G HF+P      A AAAAG N
Sbjct:    1 MVPGAGVSRHGKRKAEHERNASASKKAMEAYYGHAGHA----GVAAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPSQQPGAWGVAPPPQPGMGVHFSPEAHDFAAAAAAAGFN 111
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BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Match: A0A6H5L4I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I8_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.730e-24
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:  535 MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGRS--GDNSGEEATDDESEFSSVDGRTSPSQ-PGAWGAA 786
            MVPGAGVVRHGKRKAEHER+ S+SKK ME Y G AG      G+  GGGRS  GDNSGEEATDDESEFSSVDGRTSP+Q PG WGAA
Sbjct:    1 MVPGAGVVRHGKRKAEHERNASASKKVMEAYYGHAGHA----GVVAGGGRSSGGDNSGEEATDDESEFSSVDGRTSPAQQPGTWGAA 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Z4_ECTSI1.760e-2767.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I8_9PHAE9.730e-2475.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:56087..57820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_009550.1
Exons2
Model size1673
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.231.1prot_P-lacustris_contig1014.231.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1014 56731..57286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.1470134-UTR-P-lacustris_contig1014:56086..567301622815285.1470134-UTR-P-lacustris_contig1014:56086..56730Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 56087..56730 -
1693493450.9535317-UTR-P-lacustris_contig1014:56086..567301693493450.9535317-UTR-P-lacustris_contig1014:56086..56730Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 56087..56730 -
1622815285.17982-UTR-P-lacustris_contig1014:57286..578201622815285.17982-UTR-P-lacustris_contig1014:57286..57820Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 57287..57820 -
1693493450.9814415-UTR-P-lacustris_contig1014:57286..578201693493450.9814415-UTR-P-lacustris_contig1014:57286..57820Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 57287..57820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815285.156569-CDS-P-lacustris_contig1014:56730..568001622815285.156569-CDS-P-lacustris_contig1014:56730..56800Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 56731..56800 -
1693493450.9627542-CDS-P-lacustris_contig1014:56730..568001693493450.9627542-CDS-P-lacustris_contig1014:56730..56800Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 56731..56800 -
1622815285.166798-CDS-P-lacustris_contig1014:56861..572861622815285.166798-CDS-P-lacustris_contig1014:56861..57286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 56862..57286 -
1693493450.970583-CDS-P-lacustris_contig1014:56861..572861693493450.970583-CDS-P-lacustris_contig1014:56861..57286Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 56862..57286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1014.231.1

>prot_P-lacustris_contig1014.231.1 ID=prot_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=165bp
MVPGAGVVRHGKRKAEHERHTSSSKKAMEVYCGEAGAMTSRGGLRGGGGR
SGDNSGEEATDDESEFSSVDGRTSPSQPGAWGAATAGEGARGHFNPAGPH
GFAVAAAAGLNLGMEDSSAAGFTGASSCWSAFGGNGAGPQQHCSSSSYNS
SKETGGGWSVVERV*
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mRNA from alignment at P-lacustris_contig1014:56087..57820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.231.1 ID=mRNA_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1734bp|location=Sequence derived from alignment at P-lacustris_contig1014:56087..57820- (Pleurocladia lacustris SAG_25_93)
TGGTGAAATTTTGCTGTTCTGATTTCCCCCACTTTCCCCCCAACGGCAAG
CAGAAAAGAAGACGGCGCCTGTGGGCTCCTTGTGTCTATCCCACTGCTGC
ACGCCACAGTTCGCTCTGCAGCACGCCACGCCGTAGTCTCTTCCTCTTGC
CCGCTCTTGCGTGCCCTCCGTTTCTCGGGGAGTGCGCGAAGCGGTTGGTT
ACGGGGTATTAGACACAACACATAATCTCGCGTTCGCCAGTGTACACCGG
TCGAAGCTCATTTTTGATGGTCACGAAAGAGATCTACATGCAGAACATAC
AAGCTGCTGTGGTCAAGCTCCTCAGCGATTGACATCGTTGTCGTCGTAGC
ACTTTGCAGCGAGCCACGGAAGCATCACGTCTCACCCGCTTCATCTATTG
CTGTCGCACCCCGTTCCCTCGGCTGATGCGTGTGGGTTTTGTTCTATCAG
CCTGCATTCACGACCACCCTACAGACCGTTCTCGGAGAGTATATACTGGA
GAGAATAGGACCAGCAGACCATCAACACTATCATATGGTGCCCGGGGCTG
GTGTGGTGCGCCATGGAAAGCGTAAAGCGGAGCACGAGCGACACACCTCC
TCCTCCAAGAAGGCCATGGAGGTCTACTGCGGCGAGGCGGGCGCGATGAC
AAGCCGCGGCGGCCTCCGCGGCGGCGGCGGGCGCTCTGGGGACAACAGCG
GGGAAGAGGCAACGGACGACGAGAGCGAGTTTTCCTCGGTGGACGGCCGA
ACATCCCCCTCGCAACCCGGTGCCTGGGGAGCAGCTACAGCAGGAGAAGG
GGCGAGAGGGCACTTCAATCCGGCTGGACCTCACGGCTTCGCAGTTGCAG
CAGCAGCAGGCTTGAACCTGGGCATGGAGGATTCGAGCGCAGCTGGATTC
ACGGGAGCCAGCAGTTGCTGGTCTGCTTTCGGCGGCAACGGCGCCGGCCC
ACAGCAGCAGCAGCAGCTGCTGCTGGAGCAACAGTATTGCCAGCAGCAAC
AACTGGTGTACCAGCAGCAGCTGCAGCAGCAGCAGCTACAACAGCAGCAA
GGAGACGGGAGGAGGATGGTCCGTGGTGGAGCGCGTCTAGAAGGAGACGA
ATGGGGCTGGTTTGTCGATGCGGGAGAGCAGGAGCAGCAAGGACATCCAG
GGCAGTGGGGGTAAGGCGATCAGCCCAACATTGACACAAGGAGACCGAGC
AGGGATTAGAAAACGAGATCTCCTTACGTATGATGAAGGCTTGGTTTTTT
TTCGTGAAGAGAATTTTATTCCTAGCCTCCGGCGGGACGTAGGGGATAAT
TTGTGCTCTGGTGTGTGTTTTGCCCCGCGTTTGTAATGCTGAACACGCCT
CTTCGTTCAAATGTTTTTTTTTAGAAGTCTCTTCTTTCCCCTCCCCTGGC
GGGGGTGTTTATTGATTTTCCGTAAGCGATCTTTGCGGTCCATTTCTGTG
TTGTTTCCCCCTCAAGACGATATACAAATATACTCGAATTGTCCATTTTT
CCGTGCAGTAGAAAAAAATGGTGAAGGGTTGTGGTTCTGCATCGTTAGCC
CGCCCCTTCCCAGTGTCGGCTTGCAGTTCCCTTCAACTTCAAGTCCTTTT
CCATTCTAGTGTATGCACGTAAACCTTTACGTTTGTCCTGGAACTCCGCC
CATAGGTTCGACCACGACGTGTCCGCCGCCGCGGCAGTTTCATTTTTTCC
GGTAAATTTCCCTGTTGCGTTACACTAGTATCTC
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Coding sequence (CDS) from alignment at P-lacustris_contig1014:56087..57820-

>mRNA_P-lacustris_contig1014.231.1 ID=mRNA_P-lacustris_contig1014.231.1|Name=mRNA_P-lacustris_contig1014.231.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=990bp|location=Sequence derived from alignment at P-lacustris_contig1014:56087..57820- (Pleurocladia lacustris SAG_25_93)
ATGGTGCCCGGGGCTGGTGTGGTGCGCCATGGAAAGCGTAAAGCGGAGCA
CGAGCGACACACCTCCTCCTCCAAGAAGGCCATGGAGGTCTACTGCGGCG
AGGCGGGCGCGATGACAAGCCGCGGCGGCCTCCGCGGCGGCGGCGGGCGC
TCTGGGGACAACAGCGGGGAAGAGGCAACGGACGACGAGAGCGAGTTTTC
CTCGGTGGACGGCCGAACATCCCCCTCGCAACCCGGTGCCTGGGGAGCAG
CTACAGCAGGAGAAGGGGCGAGAGGGCACTTCAATCCGGCTGGACCTCAC
GGCTTCGCAGTTGCAGCAGCAGCAGGCTTGAACCTGGGCATGGAGGATTC
GAGCGCAGCTGGATTCACGGGAGCCAGCAGTTGCTGGTCTGCTTTCGGCG
GCAACGGCGCCGGCCCACAGCAGCAATGGTGCCCGGGGCTGGTGTGGTGC
GCCATGGAAAGCGTAAAGCGGAGCACGAGCGACACACCTCCTCCTCCAAG
AAGGCCATGGAGGTCTACTGCGGCGAGGCGGGCGCGATGACAAGCCGCGG
CGGCCTCCGCGGCGGCGGCGGGCGCTCTGGGGACAACAGCGGGGAAGAGG
CAACGGACGACGAGAGCGAGTTTTCCTCGGTGGACGGCCGAACATCCCCC
TCGCAACCCGGTGCCTGGGGAGCAGCTACAGCAGGAGAAGGGGCGAGAGG
GCACTTCAATCCGGCTGGACCTCACGGCTTCGCAGTTGCAGCAGCAGCAG
GCTTGAACCTGGGCATGGAGGATTCGAGCGCAGCTGGATTCACGGGAGCC
AGCAGTTGCTGGTCTGCTTTCGGCGGCAACGGCGCCGGCCCACAGCAGCA
CTGCAGCAGCAGCAGCTACAACAGCAGCAAGGAGACGGGAGGAGGATGGT
CCGTGGTGGAGCGCGTCTAGCTGCAGCAGCAGCAGCTACAACAGCAGCAA
GGAGACGGGAGGAGGATGGTCCGTGGTGGAGCGCGTCTAG
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