mRNA_P-lacustris_contig1014.228.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1014.228.1
Unique NamemRNA_P-lacustris_contig1014.228.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 4.380e-97
Identity = 203/281 (72.24%), Postives = 227/281 (80.78%), Query Frame = 2 
Query:  224 VTEFASAE-TAVNLSKGDALEHPVTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDVSDQPNAPAGK----MTTAEWIKSIFARGMVYTRLFDERLGVSQTAKSIAVKVQTQVERLXXXXXXXXXXXXXXXXXXXKVQEVNTTLKVTETATKWAKTAKESTDKALESNPRVAAGVQRAGDAFETVVRSVSGLAQQALGQPK----PSGPAAPAEVP 1039
            + EFA+   T +  SKG  LEHPVT+LEAVRSILVQGLPLLDQELTE+S+VQVFSAYGEISKLLLQT E SR+QRAVLVFA+ AGA +ALQANGRDILGANC+VSLASSMP L+DGLDRD+VSDQP A  G     +TTAEWIK IFA+GMVYTRLFDE+LGVS TAKSIA KVQTQV   XXXXXXXXXXXXXXXXXXX            ETA+KWA +AKESTDKALESNPRVAAGV +AGDA  ++V+SVSGLA QA+GQP+    P  P  P+ VP
Sbjct:    1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVP 281
[Close]
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.900e-25
Identity = 68/124 (54.84%), Postives = 92/124 (74.19%), Query Frame = 2 
Query:  290 VTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDV----SDQPNAPAGKMTTAEWIKSIF 649
            VTE +A RS+LVQGLP+LD++ TE SLV+VFS YG +S+LLLQTI  S++QRA++VFAE+AGA AALQ N RDILGA+C+V L+S++   ++  DR ++      +     G  TTAEWI+ IF
Sbjct:  447 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNIHWMGESESALSGGTPTTAEWIQLIF 570
[Close]
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.370e-15
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = -2 
Query: 2082 DALHYADSRRCKERIREAHRREEKAAEAQRQLALQRKRDEAIRRREQELLDRIDLRSRARK 2264
            DALHY DSRRCKERIREA RREE+AAEAQRQLALQ+KRD+  RRREQELLDR+DLR+RAR+
Sbjct:  452 DALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARARR 512
[Close]
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A7S1XND4_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XND4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.730e-8
Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:  314 SILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILG 517
            S+LV+G+P+  +ELTE ++V +FS  G++ +L++QT+ G  SQRA++ + +AAGA AAL  +G  +LG
Sbjct:   53 SVLVEGIPVATRELTEDAVVTLFSTKGQLGRLIIQTVAGGASQRAIVSYTDAAGAAAALHLDGERVLG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI4.380e-9772.24RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE1.900e-2554.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G7Z2_ECTSI2.370e-1583.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1XND4_9STRA3.730e-845.59Hypothetical protein (Fragment) n=4 Tax=Phaeomonas... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:35051..42331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_009520.1
Exons8
Model size2379
Cds size876
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.228.1prot_P-lacustris_contig1014.228.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1014 35217..40994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.875068-UTR-P-lacustris_contig1014:35050..352161622815284.875068-UTR-P-lacustris_contig1014:35050..35216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 35051..35216 +
1693493450.7776375-UTR-P-lacustris_contig1014:35050..352161693493450.7776375-UTR-P-lacustris_contig1014:35050..35216Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 35051..35216 +
1622815284.9749465-UTR-P-lacustris_contig1014:40994..423311622815284.9749465-UTR-P-lacustris_contig1014:40994..42331Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 40995..42331 +
1693493450.875089-UTR-P-lacustris_contig1014:40994..423311693493450.875089-UTR-P-lacustris_contig1014:40994..42331Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 40995..42331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.8857253-CDS-P-lacustris_contig1014:35216..354261622815284.8857253-CDS-P-lacustris_contig1014:35216..35426Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 35217..35426 +
1693493450.7961078-CDS-P-lacustris_contig1014:35216..354261693493450.7961078-CDS-P-lacustris_contig1014:35216..35426Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 35217..35426 +
1622815284.8953664-CDS-P-lacustris_contig1014:37104..371591622815284.8953664-CDS-P-lacustris_contig1014:37104..37159Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 37105..37159 +
1693493450.8056238-CDS-P-lacustris_contig1014:37104..371591693493450.8056238-CDS-P-lacustris_contig1014:37104..37159Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 37105..37159 +
1622815284.9043493-CDS-P-lacustris_contig1014:37709..377711622815284.9043493-CDS-P-lacustris_contig1014:37709..37771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 37710..37771 +
1693493450.8181577-CDS-P-lacustris_contig1014:37709..377711693493450.8181577-CDS-P-lacustris_contig1014:37709..37771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 37710..37771 +
1622815284.9138577-CDS-P-lacustris_contig1014:38647..387621622815284.9138577-CDS-P-lacustris_contig1014:38647..38762Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 38648..38762 +
1693493450.8334906-CDS-P-lacustris_contig1014:38647..387621693493450.8334906-CDS-P-lacustris_contig1014:38647..38762Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 38648..38762 +
1622815284.9266462-CDS-P-lacustris_contig1014:39274..393931622815284.9266462-CDS-P-lacustris_contig1014:39274..39393Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 39275..39393 +
1693493450.8421578-CDS-P-lacustris_contig1014:39274..393931693493450.8421578-CDS-P-lacustris_contig1014:39274..39393Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 39275..39393 +
1622815284.9384375-CDS-P-lacustris_contig1014:39796..399001622815284.9384375-CDS-P-lacustris_contig1014:39796..39900Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 39797..39900 +
1693493450.850309-CDS-P-lacustris_contig1014:39796..399001693493450.850309-CDS-P-lacustris_contig1014:39796..39900Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 39797..39900 +
1622815284.9493809-CDS-P-lacustris_contig1014:40207..402681622815284.9493809-CDS-P-lacustris_contig1014:40207..40268Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 40208..40268 +
1693493450.858363-CDS-P-lacustris_contig1014:40207..402681693493450.858363-CDS-P-lacustris_contig1014:40207..40268Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 40208..40268 +
1622815284.9621427-CDS-P-lacustris_contig1014:40844..409941622815284.9621427-CDS-P-lacustris_contig1014:40844..40994Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 40845..40994 +
1693493450.8667738-CDS-P-lacustris_contig1014:40844..409941693493450.8667738-CDS-P-lacustris_contig1014:40844..40994Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 40845..40994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1014.228.1

>prot_P-lacustris_contig1014.228.1 ID=prot_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=292bp
MTLTKAMSFDVVRFFCQPRVTEFASAETAVNLSKGDALEHPVTELEAVRS
ILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAE
AAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDVSDQPNAPAGK
MTTAEWIKSIFARGMVYTRLFDERLGVSQTAKSIAVKVQTQVERLDEKHN
VSGKIAAVALGAQAKVQEVNTTLKVTETATKWAKTAKESTDKALESNPRV
AAGVQRAGDAFETVVRSVSGLAQQALGQPKPSGPAAPAEVP*
back to top

mRNA from alignment at P-lacustris_contig1014:35051..42331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.228.1 ID=mRNA_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7281bp|location=Sequence derived from alignment at P-lacustris_contig1014:35051..42331+ (Pleurocladia lacustris SAG_25_93)
ACCGAGTACGTTTTTACATAAGCATCTCTGATAAGCGCATAGCTCTAGCA
TCGCAATTTTACATGTATACATGTAAAGGGACTGACCTGACGGCTGGGGG
GTTGAACGGCAACCACCAGCAATATCTGCCGTTCTTCGGGGTTGTTCGGA
AAAACCCAGGTTCTCAATGACCCTCACAAAGGCAATGAGTTTTGATGTCG
TCCGTTTTTTTTGTCAACCGCGTGTGACAGAATTCGCGTCGGCAGAAACG
GCCGTGAACCTCAGCAAAGGCGACGCTTTGGAGCACCCCGTCACAGAGCT
CGAAGCCGTCCGCTCCATCCTGGTGCAGGGGCTCCCGCTGCTTGATCAAG
AGCTGACGGAGACTTCCCTCGTGCAGGTAAACGTCAATGTGAACCACAGC
TATATTCATACCTCTCTTGGTGTCTTCAACATGTTCATGGCTCCTTCAAC
GGTAATAACAATTTGCCAGCGTTTCTGAAGCCCTTCTGGAGAGGTTTCAG
CTTCCGTTGCGGCTAACAAGTCCCTACAATGGGTTCTTGATCCTCAATTT
CTTGACCCAAACGATTTGCTCGTGTCGCACGCAACGTACCTCCACGCCGT
CGCGGAGGTGCTTCCGCAGACACGCAGAGACGACCTCTTCAATCGACAAG
CTCTGTCCGCGGGCCACCGTCTCTTTGTTCCCGTCTCTATGATAGAAGCT
ACTCATTCGTGGGGTACACCGTCTCTGAAAGACCCACCCCATAAGACACT
ATCATCATTTCACAAAGCCTGCATTTCCGAGAAATGTGTTGTACAGATTT
TGTGGACACTTGAATACCCCGATGAAGCCTGCACTCACCTAGAGATTGAT
GTGAATCTGTCATGCAGATCTTGAGATAATCGCGCTTTTTTTTTTTTTCA
TCCCAGCTATTCTGGATGCGAGCTTTCTTTACACCTTCGGCGGTATGGAG
GGTGGCACCCAGCCGGGGTCACACAGAAGGGTTCCTCTCCTGAGGCCCCC
ACCCGCCCTCCTGCGGTACTGCTGTACATGCCTAATCGCGAGAAGGATTC
AGCTATCCCTTTCCCTCGTCGAATTGAATCGAATTGTGTTTTACTCACGA
TAACAAGTAAAACAAGCGGCAGGTGTCATTTTTACCTTCACCGTGAAGAC
TCGGACCATGAACCACCTGCAAGGGACATCTCAGATGGTAGTCTTCCTTG
GAGTTTTGTGTGTTATCTTGAATTGCGTCTCTTCCTCGGGCACTGGGGGT
GGTGCGGGCTGCAAAAAATGTTTTCAACAATCTGCCACGCAAAGAATGTC
CCTTTCTTTCCAGCACACGCCCCATCACGAAATATGTATCTTCCTGTGTA
GTGCGATGCTTTGATGCCTCTCTCTCTCTCTCGCTCTCTGTCTGTCTCAA
CGTGTGACCAGCAGAAGCGAGATGCGAAAAATTGTGACGTTCTGTGAGTA
CAGGCAACGACGCGATAATTGGTAGAGACAGCGAGGGTGCACATAAGTTC
GGCGTAGCAGCAGCCGTCTAGATTTCGGCACCTTTCGCATGCAGCTGCTG
CCCAGATGCCAGTACCGCTGCTCTTCTGCGCATCCTGTTCGCAACCAGCC
TCTCGCGGCGGTGCTGTTTTTCTTGTAGTAAAGAAAAGTGGACATGAGGT
GTTTTTTTCAGGGAGTTAGAGGTATGCCACACTGCTGCGTAGCCCATGAC
TCTTCCAGCGCGTGCATGTATATGCCATAGGCATCGCGGAACTTGTTTTT
TACCAATGTATGAATGTGATTCGTTGGGGACGGGGGAGGGGGACGCATGC
CTCCACACCAAGGCGCGTTCAAGGGATCACTATTATTTCCACCAGGAAAG
GAAACGGAGATTGATAGTCCGCACCACTGCAGAATCGCACCTTGTGCAAG
CGCCTATATCATTTACTCCGAGTACTACAATATCGTGCAGGCTTTGGGTA
TGTAGGCAAGACGGTTTCAGAGTCTGGAATCGGCGCTGCGCTGCTGGTTG
CGGTTCGCCCAAACCTCTCCGATCTGTGGCTGCTTGTGTGTGTATCGTCC
TCAGGTGTTCTCGGCGTACGGCGAAATCTCGAAGCTGCTCCTGCAAACGA
TCGAAGGGAGTGAGTCTTTTAATCGTTATCGACGAATATGAATGCCCATA
ACCGCGAGGAATGCGGCTTCTTCGTTAGGAAAATGTAGTCCCCTCGCAGT
AAGGAAACAAAGCACCGTTTGCGACGCTGCCAGACACCGTTGTGGGAGTC
AACGCTCTCGGGCGTAGTTGATGCTACCATGTATGCATAGCATGCCGCCA
AATAGCGCTGCTGCTGTGCAGTGACTTGTGCGAAGTCCAGCAGGCAGTGC
CGCGCTTCCACGAGAACCGCCGTTCTGACCACTTTGTCGCTCCGCGATTT
CTGTTTCCCCAGCAGAAAAGCGCTTTCGCCAGATGCACTTTTCGCTCACC
ACGGTGCGCTATTCACCAAGTTGGCAGAGCGGACTGTCCTTTCCTCGCGG
CACGTTGGCACGGCGATTCGTTGGCATGCTTGACGGTGGACGACAGGCCG
TTCGCTATCTGTGTAACATGCCCGTATCATGAGTGTTTTTCGCTTGCTGT
GTGCGATACTGATATGCGTCAATGCCCTTCGAACCCGACGCTCGATCTCT
TGGATGCAGGCAGATCGCAGAGGGCTGTCCTGGTATTCGCCGAAGCGGCC
GGTGCTAACGCTGCTCTGCAGGTGCGACGAGCGATGGCTCCGCCGTGTGC
GCTATTTTGGAACCTGCACTAGCTTACGACTTCAGTCGGATGAAATCCGG
CTCGAAAGAGTACCAGTGTCCGGCGCAGAACTCAGCCCCCGGATGCTCTT
CCACGATGGGTGCTTCGAATAGCGTGCACTCGTGCACTTCCTTGAGCCCA
GCAGGCAGCATGACGGCGGTGTATGGCCCCGAGCAGTGCTTGGCGCAATA
CACCGCCGTCATGCTGCCTGCCTTTCCACAACTCGGCTCTTGCGTGCTTA
CATGGGCACACCGCTCGCTAACGACGTTGACCATGCCCTCGATCGCGTGC
TTGGCACATACATCGCCGTTGTTGCTGCCTGCCCTTTCCCATAGCTCTGC
CACATCGTGCGGCTTACTGGGCACACTGTTTGCTGGCGACGTTCGCCATG
TCCTCATTCGCAGACTTCGCGCAAGACACAAGCGCCTTTCTCTCTGTCAT
GAGCGCACACTGTAGCATTCCCGCGAAAAAAGTGGAAACGGCGCGTTCAA
CCGCTGTACCGCCAACAACCTTGCTCGAAATATGAAACTGAATTTTGCCA
TCAACCCCAAAACCTATACTGTACTGTATATATTACGCATTTGTCGTCGA
AGGCTGCTTCTGATGTTTTTCGGCTTGAATATCAAGCTGATGCGACCCTA
CCCAATGAGCGCGACTTGTGTGACGTTGCCTCCGTCACCGTCTCTTCTTG
TTCTTGTACGAAACTAACATACCCCCCTCTATTCGAGCATGAAGGAGTCA
ATAGACAAGGTAACCGATTTCCCTGCCGCTGCTTTCTTGCGCTACTGCTG
GTGGTTTGTGTGGTGTTTTGTTGCTTTGCTGTGCGTTTGCCGCCCAGGCG
AACGGGCGCGACATCCTTGGCGCGAACTGCACCGTCAGCTTGGCGTCGTC
CATGCCGATGTTGAGTGACGGGTTGGACCGCGATGACGTCAGCGATCAGC
CTAACGCTCCTGGTGAGACCTCATCCTCCCTACTCTGCCATCTACAGCAG
TGCTGAACATATGCAACTATTCGCCCCACGGCCTTTGTTTGCAGTCTAGG
TTTGGGGCGATCCAGACGCGTTTGAGAGGTTGCCTTGCCGAGGCGCCTAT
GAATCGCCGTGGTCGTTGCCCTCAGAAGCAAAATGGAGCAGAAGGTTGAG
TGTCGCATTTCGACGCCGCACGCCCTTATTGTGCGCTTCGTGTCTTTCGC
TGAACATTCGTTCGACTACCCTAGGGACGAGGGGCACCGAGGCGCTATCT
CTGGGGTCGCCTTTGGCTTCAAATATGCGTTTTCCGTGTGAGGGGGACGT
TCGCGCCGCATTTGCTCATTCATCGGCGTTCTCGCATTTTGTAGCATGCT
GGCGAGCGGAGTTGGTTGGCGATTTTTTGTGTCGACTTTGACGCCGCTCT
TTGTTGTTCCTTTCCTCGATTTTTTGTTTTTTGCGGTTCGGTTCGTCATT
TGCCGCGAACGGGTGAACTCGAAGCCGGCAAAATGACCACGGCGGAGTGG
ATCAAGAGCATTTTCGCGCGGGGCATGGTCTACACGCGCTTGTTCGACGA
GAGGCTCGGCGTCTCTCAGACCGCTAAAAGCATAGCAGTAAAGGTGGGCA
CTATTTGAAGCGCTGGCTGCAGCTTCGTCGATAAGGCGGCTGCGGGAACT
TCTTGTGTTTGAGAGAGTCCCGAGCTTCGATGGGTTTGCTCTTTCTCTAA
GGGCTATCGTGGCGCTTGTCGAATTGCCGACAGTCTCCCATGTAACTCAA
GCATAGCGGAAATATTAGTCGGGCCTCTGGTTAACTATTTTATTCGGCTT
TTGTTTTATGTTTTACTGGCTAGGTGTGGTTTGTCTCAGGTAGGCAGATT
TCTCGTTGCTGAGTATCGACAGGGTACAGCAGGCCCGACTCCCACACTGC
GGTCCTACTCGCTTGCAAGGATTTTTTTTTTTTGTATTGAAAGCCAAGGA
ATACGTCTCATATCCTACTGTGATGTGTCTCTCCGGCCGGGCCCAGGTCC
AAACTCAGGTGGAGCGGTTAGACGAGAAGCACAACGTCAGCGGCAAAATT
GCTGCGGTTGCCTTGGGCGCGCAGGCGAAGGTACAAGAGGTCAACACCAC
GTGAGTCACCAACTTCCACTATTTCACTCGCCTCAGCGCTTGACAATGCC
AGGGGAGCTTCGCACTTTTTTGCCATCCGAGCCGGCGGCCGGTTTGACTA
GGCGCAGCCTTTTGGGTGGTAGCAGCCTCGACCCTTCGACCGAGTGGTCA
GCCGGACCTGAAAAGCGACCGCAAGTGTCGGTTGGATTACGCATCCGTGT
CGCTCGTTGCCTTGGGTACAGGCGGTGACCATAGAACCTTGAGCGTCGAC
ACATTTTGTCTCATGGCTTGTTCACCGTTTTATGCCTGGGGTTGCCCTGG
GTTACAGGCTCAAGGTGACGGAGACTGCGACGAAGTGGGCGAAGACCGCC
AAAGAGTCAACGGACAAGGTATGTTGTTGGTGTTGGTGTTGCTCCTCCCC
CGATCGCATTCCAGCCACAGTGCTGGATTCAGTTCGGGCTCTGCTCTGAA
GCATCTCGGACCGTCTTCGGGAGGCTTAGAACCGGGGTCGCGGAAAGGCG
TCGACCGGCGGATTGGATTGGATAGACGAGACCACTCCCCACGCTTCTCT
CAGCCATTGCAGCTGGATCGATTAGGGTGTGTGTGAGGGTGTCTCGCGTT
TTGTGAAGGTGTAGAACAGAACACGATTGTCCCCGTGGCATGCGGTAACT
TGAGCGTATCGAGTCGTCCTGGCGTGCGACTAGCTTGCTCCCAAAGAACC
CTTGTAGACACGTGCGAGCCCACCTCGACGGTATCACGTGCGCTCCAGGC
CTTATTTGTGTGGGGCATGTGCTTGTCATGTAGTTTCAAAGAGTTCCCAA
GGCACTGCTAGTCGCCAAGATTGCTGTCCATGCTTTGACCAAGTACACAC
GTGCATATGCCTCACAACTGTTTTCAAGATGAAGACGAGACCAGCTGCAA
CTCCGCGACGTACCCGCTGCCGCATCCTACGGTCTCCTCCGCAGGCTCTC
GAGAGCAACCCTCGCGTTGCCGCCGGCGTGCAACGAGCAGGAGATGCCTT
CGAAACTGTGGTGCGAAGCGTCAGTGGATTAGCGCAGCAGGCCCTGGGCC
AGCCGAAGCCCTCGGGTCCTGCAGCCCCGGCCGAAGTGCCGTGAACCAAG
CCTGCTTAGCTCTTCCTATTTTTTTCATTTTTTCTATTTTTTTTCTGGAG
GATGGAAACTCGATCGAATGTCCATCGAGGTTATCGCGCGAATCGAGGTT
ATCGCGCGAGCGTCGATAATCCCAAACAGTTGTGGATTCGTGGTTGATGT
CAATGCGGCGGTCGACGTTTTCCTTCTTCTGCTTTGAGATCGAAGGTGGA
TCGGCATCGGCATCGCAACCCTTGTCCCATTTTTTCTTCCATAAACGCAA
ATGCGGACCACGATGGCATTCATCCACTCTGACCGCGCGGATGTGATGGC
GTGGCGAGAAAACAACAAAATGTCGTTCCTCGATTCAGCCGAGCGGAATA
ACAACAGAGAGCGAAGTCGGTTTGCGGCTGGATTACGGTCGCGGCGAGAA
GGTGGTTGGTTGCCTTGGGGTTGGGTGCGTCAAGTAATGATGCTCGTTTT
GGGCAGGGGACTCTTGGGGCAGATTTTTCGGCGCGCTGGATGGAAAGTTG
TTGATTTCGGCCTGCGTTGACGGGAGGTTGGGTTTCGACACAAGCACGTT
CCCTGTGCTTGAACCTAAGCACTGCATGATGGCGGTTTGTCGCCGCTTTT
TGGAGGAGGGGGTGTTGGGAAGGAAGGCGGCCGCTCGCCCGCCTCCTCGT
GTGTTGAAAGTGTAAATATGGTGCCCGTGTATATAAGACTGCCGTAGATG
GTTTTTGACGTGATATGTTGTTGCAGAGATCGCTTGTGCCAACGGGAGAT
CGGACGCCATTGTTGACCTCACCTGTGTCCGCCCACGAATGACACAGGCA
GTGCAGATAACCGCCCGGGCTCGAAGTTCGCAAATCACGCTGCAGATTGA
GATGGCCAATAATCAGTCCATCGGATCATGAGTATAGTCTCCTCTGAGCA
AGTTTGCTTGCGAGGAAATGCTGATGGTCTTGAACCACTCCAAAATGCAA
CGGATGGTTCACCCCACCGTTGGAGGCGGGCCGATGTGAACCAATCCATT
GTTCACCACCAAAACGCTCGTGGACAACAGTTATTTTCGGGCTCTCGACC
GGAGGTCGATCCTATCTAGCAGCTCCTGCTCCCGACGCCGGATTGCTTCG
TCCCTCTTTCGTTGGAGCGCCAGCTGCCTCTGCGCCTCGGCAGCCTTCTC
TTCTCTCCGGTGTGCCTCTCGAATCCGTTCCTTACACCTTCGACTATCAG
CGTAGTGCAGAGCGTCTCGCCCTCTATCGTCTTTGTCGTGCAAATCCGCG
TGTCGCCCTATCAACAGCTGTGGGGGGAAAGGAGGTACATGTATATCGAG
TGAGGCACGGCGGTAATGACTTGAGCGGGAT
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1014:35051..42331+

>mRNA_P-lacustris_contig1014.228.1 ID=mRNA_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1752bp|location=Sequence derived from alignment at P-lacustris_contig1014:35051..42331+ (Pleurocladia lacustris SAG_25_93)
ATGACCCTCACAAAGGCAATGAGTTTTGATGTCGTCCGTTTTTTTTGTCA
ACCGCGTGTGACAGAATTCGCGTCGGCAGAAACGGCCGTGAACCTCAGCA
AAGGCGACGCTTTGGAGCACCCCGTCACAGAGCTCGAAGCCGTCCGCTCC
ATCCTGGTGCAGGGGCTCCCGCTGCTTGATCAAGAGCTGACGGAGACTTC
CCTCGTGCAGATGACCCTCACAAAGGCAATGAGTTTTGATGTCGTCCGTT
TTTTTTGTCAACCGCGTGTGACAGAATTCGCGTCGGCAGAAACGGCCGTG
AACCTCAGCAAAGGCGACGCTTTGGAGCACCCCGTCACAGAGCTCGAAGC
CGTCCGCTCCATCCTGGTGCAGGGGCTCCCGCTGCTTGATCAAGAGCTGA
CGGAGACTTCCCTCGTGCAGGTGTTCTCGGCGTACGGCGAAATCTCGAAG
CTGCTCCTGCAAACGATCGAAGGGAGTGTTCTCGGCGTACGGCGAAATCT
CGAAGCTGCTCCTGCAAACGATCGAAGGGAGCAGATCGCAGAGGGCTGTC
CTGGTATTCGCCGAAGCGGCCGGTGCTAACGCTGCTCTGCAGGCAGATCG
CAGAGGGCTGTCCTGGTATTCGCCGAAGCGGCCGGTGCTAACGCTGCTCT
GCAGGCGAACGGGCGCGACATCCTTGGCGCGAACTGCACCGTCAGCTTGG
CGTCGTCCATGCCGATGTTGAGTGACGGGTTGGACCGCGATGACGTCAGC
GATCAGCCTAACGCTCCTGGCGAACGGGCGCGACATCCTTGGCGCGAACT
GCACCGTCAGCTTGGCGTCGTCCATGCCGATGTTGAGTGACGGGTTGGAC
CGCGATGACGTCAGCGATCAGCCTAACGCTCCTGCCGGCAAAATGACCAC
GGCGGAGTGGATCAAGAGCATTTTCGCGCGGGGCATGGTCTACACGCGCT
TGTTCGACGAGAGGCTCGGCGTCTCTCAGACCGCTAAAAGCATAGCAGTA
AAGCCGGCAAAATGACCACGGCGGAGTGGATCAAGAGCATTTTCGCGCGG
GGCATGGTCTACACGCGCTTGTTCGACGAGAGGCTCGGCGTCTCTCAGAC
CGCTAAAAGCATAGCAGTAAAGGTCCAAACTCAGGTGGAGCGGTTAGACG
AGAAGCACAACGTCAGCGGCAAAATTGCTGCGGTTGCCTTGGGCGCGCAG
GCGAAGGTACAAGAGGTCAACACCACGTCCAAACTCAGGTGGAGCGGTTA
GACGAGAAGCACAACGTCAGCGGCAAAATTGCTGCGGTTGCCTTGGGCGC
GCAGGCGAAGGTACAAGAGGTCAACACCACGCTCAAGGTGACGGAGACTG
CGACGAAGTGGGCGAAGACCGCCAAAGAGTCAACGGACAAGGCTCAAGGT
GACGGAGACTGCGACGAAGTGGGCGAAGACCGCCAAAGAGTCAACGGACA
AGGCTCTCGAGAGCAACCCTCGCGTTGCCGCCGGCGTGCAACGAGCAGGA
GATGCCTTCGAAACTGTGGTGCGAAGCGTCAGTGGATTAGCGCAGCAGGC
CCTGGGCCAGCCGAAGCCCTCGGGTCCTGCAGCCCCGGCCGAAGTGCCGT
GAGCTCTCGAGAGCAACCCTCGCGTTGCCGCCGGCGTGCAACGAGCAGGA
GATGCCTTCGAAACTGTGGTGCGAAGCGTCAGTGGATTAGCGCAGCAGGC
CCTGGGCCAGCCGAAGCCCTCGGGTCCTGCAGCCCCGGCCGAAGTGCCGT
GA
back to top