mRNA_P-lacustris_contig1014.225.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1014.225.1
Unique NamemRNA_P-lacustris_contig1014.225.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Match: D7G7Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y9_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 4.890e-39
Identity = 133/310 (42.90%), Postives = 152/310 (49.03%), Query Frame = 1 
Query:   34 MLTIVKGAEEVARARANRKYRSSKKKSV-------------NTDRSLPGHLGVAVSRAQN--------------------AGDTPGSTSSEPSDATSNFGAA--DLTSDNPS-------------------LPLESASNAAPGGQSLGSWLMPTSSPTAATKVNKRRRQRPSQGTESSDVPRDRSSGTSTWASLS-------------RGQDGQSGGTLSAWLEPRQPDPSRKKLSERGGIVDASVGEQGPTGGSSDHEYDDDDGSGAWMSDRLEGLDPRGAARAKDSWTDRERRNLTYTDIALGAKRKG 762
            MLTIV+GAE+VARAR                          N  R LPG +GVAV R  N                      D PG TS+EP+    N   A  DLTS+ P                    L   +A++     Q LGSWL P +SP  A K   RRRQRPSQG  + D P  R +  + W   S             RG  G + GTLSAWLEPRQP  +R K +  G     SV E+ P GG S  E   +DG G WMSDRLEGLDP GAARAKDSW+DRERRNLT TDIALGAKRKG
Sbjct:    1 MLTIVRGAEDVARARXXXXXXXXXXXXXXXXXXXXXAAEHHNVGR-LPGQVGVAVRRGDNKRPRRTFDDVSGDYEYNPLDVHDGPGPTSAEPAAGGGNNEPATVDLTSERPEPVGGDTMSNTFAAFANPGPLRRSNAADQVCAQQLLGSWLQPVASPKKAAK---RRRQRPSQG--AFDEPDVRRNSATAWGGASSPGRDSRGDGCGTRGNGGGNDGTLSAWLEPRQP-ATRGKRTAHG----TSVAEREPDGGFSGDEGGGEDGGGRWMSDRLEGLDPTGAARAKDSWSDRERRNLTCTDIALGAKRKG 299
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BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Match: A0A6H5KWK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.130e-34
Identity = 127/307 (41.37%), Postives = 146/307 (47.56%), Query Frame = 1 
Query:   34 MLTIVKGAEEVARARANRKYRSSKKKSV------------NTDRSLPGHLGVAVSRAQN--------------------AGDTPGSTSSEPSDATSNFGAA-DLTSDNP--------SLPLESASNAAP----------GGQSLGSWLMPTSSPTAATKVNKRRRQRPSQGTESSDVPRDRSSGTSTWASLS-------------RGQDGQSGGTLSAWLEPRQPDPSRKKLSERGGIVDASVGEQGPTGGSSDHEYDDDDGSGAWMSDRLEGLDPRGAARAKDSWTDRERRNLTYTDIALGAKRKG 762
            MLTIV+GA EVARAR                         N +R L G +GVAV R  N                      D PG TS+EP+       A  DL S+ P        S   E+ +N  P          G Q LGSWL P +SP  A K   RRRQRPSQG  + D P  R +  + W   S             R   G + GTLS WLEP QP  S K+      +   SV E+G  GG S  +   + GS  WMSDRLEGLDP GAARAKDSW+DRERRNLT TDIALGAKRKG
Sbjct:    1 MLTIVRGAAEVARARXXXXXXXXXXXXXXXXXXXXXAEHHNVER-LRGQVGVAVRRGDNRRLRRTFDDVSGDYDYNPLDVPDAPGLTSTEPAGRGDKEPATVDLASERPEPVGGDTTSNAFEAFANPGPLRPSNAADQVGAQFLGSWLQPVASPKKAAK---RRRQRPSQG--AFDEPDVRRNSATAWVGASSPGRDDRGDGCSTRSNGGGNDGTLSGWLEPHQPATSGKQT-----VRGTSVAERGSDGGFSGDKGGGEYGSSKWMSDRLEGLDPSGAARAKDSWSDRERRNLTCTDIALGAKRKG 296
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7Y9_ECTSI4.890e-3942.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWK6_9PHAE1.130e-3441.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:7354..9871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009500.1
Exons3
Model size1200
Cds size885
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.225.1prot_P-lacustris_contig1014.225.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1014 7387..9589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.2587144-UTR-P-lacustris_contig1014:7353..73861622815284.2587144-UTR-P-lacustris_contig1014:7353..7386Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 7354..7386 +
1693493450.2934875-UTR-P-lacustris_contig1014:7353..73861693493450.2934875-UTR-P-lacustris_contig1014:7353..7386Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 7354..7386 +
1622815284.298429-UTR-P-lacustris_contig1014:9589..98711622815284.298429-UTR-P-lacustris_contig1014:9589..9871Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 9590..9871 +
1693493450.330529-UTR-P-lacustris_contig1014:9589..98711693493450.330529-UTR-P-lacustris_contig1014:9589..9871Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1014 9590..9871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815284.2681804-CDS-P-lacustris_contig1014:7386..75191622815284.2681804-CDS-P-lacustris_contig1014:7386..7519Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 7387..7519 +
1693493450.305331-CDS-P-lacustris_contig1014:7386..75191693493450.305331-CDS-P-lacustris_contig1014:7386..7519Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 7387..7519 +
1622815284.2779522-CDS-P-lacustris_contig1014:8514..90311622815284.2779522-CDS-P-lacustris_contig1014:8514..9031Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 8515..9031 +
1693493450.3152523-CDS-P-lacustris_contig1014:8514..90311693493450.3152523-CDS-P-lacustris_contig1014:8514..9031Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 8515..9031 +
1622815284.2869525-CDS-P-lacustris_contig1014:9354..95891622815284.2869525-CDS-P-lacustris_contig1014:9354..9589Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 9355..9589 +
1693493450.323128-CDS-P-lacustris_contig1014:9354..95891693493450.323128-CDS-P-lacustris_contig1014:9354..9589Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1014 9355..9589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1014.225.1

>prot_P-lacustris_contig1014.225.1 ID=prot_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=295bp
MLTIVKGAEEVARARANRKYRSSKKKSVNTDRSLPGHLGVAVSRAQNAGD
TPGSTSSEPSDATSNFGAADLTSDNPSLPLESASNAAPGGQSLGSWLMPT
SSPTAATKVNKRRRQRPSQGTESSDVPRDRSSGTSTWASLSRGQDGQSGG
TLSAWLEPRQPDPSRKKLSERGGIVDASVGEQGPTGGSSDHEYDDDDGSG
AWMSDRLEGLDPRGAARAKDSWTDRERRNLTYTDIALGAKRKGRGRVGVR
GWKTKSAGKKAFMAAGRGGGAAFVKMSKSDGGGGGGGGRKKRKG*
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mRNA from alignment at P-lacustris_contig1014:7354..9871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1014.225.1 ID=mRNA_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2518bp|location=Sequence derived from alignment at P-lacustris_contig1014:7354..9871+ (Pleurocladia lacustris SAG_25_93)
GTTTCTGCAGTGAAGTACAACGAGATTGGAGATATGCTGACAATCGTGAA
AGGTGCCGAAGAAGTGGCGAGAGCTCGAGCGAATCGGAAATATCGAAGCA
GCAAGAAAAAATCGGTGAACACGGACCGTTCTCTCCCAGGACATCTCGGA
GTTGCTGTTTCGAGAGGTGTGAGGAAAAAGGCAACGCCTGCCACGGCAGT
GCACGTGTTGCGACATGTCGAGGCATACACCGAACAACAACATCCACGCT
CGCCGCGGGTTTGCCCATATACTCGCGAGCTGGTGAACCAGGTCGAGCCG
CAGCTCACGTCCCCAATTCAGATGAACGTTAAACAAACATATTTGAAGAT
TTGAATTTCAAACAGCCCCTTTTTTCTCTTCTGTTGCTGAATCTACTACT
ACTGTACCTTGTCGATCGGAAAGCTAGAAGTACGACACCCACAACATATA
TATTTCGTGACTGATGTGGGCGGGCGTCAGCTACGGTTCGGTGTGAGGCC
GCACAGGAGTTTCGCCCTTTTGTTTTGTCAACATCTTTTTTGCGCGGTTC
GTGCCCGATCGCCCAGTACAATAGGACGGTTCAGTCGTCACTTACTTCCC
CATTCGTCGGCGATTAAGTCGATTTTTGTATACCCACGACCGTACAGCAG
TAGTCGCTCTCGACTGGGGGACATGATGCGAGGAAAAAAATCACCGAGAT
TCGATCTCACGTCCAACTACTCTCAGAAGGTTTACTCTCAGAAGGTCACA
AGGCTACCAACTGGACCCCCCCGAATGCGTGCTATTATCGCGGGATAAGC
TGACCTTTGTCCACCACCAACGCGCGCCGTCCTCCAACAGTACAGCGACA
GCAGTGTGTCTCTCTCCTTGCTAAATTTGATCGTGAGGTGCGCATCCCAG
AAAGCGGCGATCAGCTTTCCGTTGCAACAAAAAATTCACGATCCACGCTT
GTACAGTACATGGAGGCAAGTGAACGCTGAAAAAGACGCGGTGCATGAAT
CGGGGGAATGAATTGCAAACTTCTGTCAATTCCTTCTCAATTTCTGCTCA
AGTCCTCTTCATTTCCTTCTCAATTTCCTCTCGCGTTGGACTGACAACCT
TTGAAGGCATCAGTATACTGCGTGTATATTCCCTCTTTCCTCGCATGACC
CCCGTCCTCAGCCCAGAACGCAGGAGACACCCCAGGATCAACCAGCTCCG
AACCCTCGGACGCCACCTCGAATTTCGGCGCGGCAGACCTCACGTCGGAC
AACCCCAGCCTACCCCTAGAAAGCGCCTCCAACGCTGCCCCTGGTGGGCA
GTCTTTGGGTTCGTGGCTCATGCCAACGTCTTCCCCGACGGCAGCGACCA
AGGTCAACAAGAGACGGAGGCAGCGGCCGTCGCAAGGCACAGAGAGCTCT
GACGTTCCGCGCGACCGCAGTAGCGGCACGAGCACGTGGGCGTCGCTTTC
CCGGGGGCAGGATGGGCAGAGCGGTGGCACGTTGTCCGCATGGCTCGAGC
CACGGCAGCCGGACCCCAGTCGCAAGAAACTGTCCGAGCGAGGCGGGATT
GTAGATGCCTCCGTAGGGGAGCAAGGGCCCACGGGTGGATCCTCTGATCA
TGAATACGATGATGATGATGGCAGCGGCGCGTGGATGTCGGATAGGCTCG
AGGGCCTCGATCCCAGGGGGGCAGCTAGGTGAGCATGCGCCACCTGTGGT
TGGTGCCGCTTCAGGAGTCGAAGACGCGCCAGCGTTTGAGCAGTCCTCGT
GTTTGGGCGTGAGTGCCGGTGGCCTACTGAAGTTTAGCCTTGTTCCCGCC
CCAGCAAACACACACTGGCGCACGTGTTGCTGCTGTATGCCAATAATCAA
CCTAACGCCTTTGGTGTTGTTGCTCAGCCCAGGAAGCCGTCTGTCGCGAT
TAAACCCCAAGGGCCAGCCACAAGTCGTGTCGTTGGTCGTATCGTGAATC
TTGCACCTTTTCGCACCCGTGATTTTGGTAATCGGTGCCTGACACCTCCA
GAGCCAAGGACAGCTGGACGGACAGGGAGAGGCGAAATTTGACGTACACA
GACATCGCCTTAGGAGCCAAACGCAAAGGGAGAGGCCGCGTTGGTGTCAG
GGGCTGGAAAACCAAGTCCGCCGGAAAAAAAGCTTTCATGGCAGCTGGGC
GGGGCGGTGGGGCGGCCTTCGTCAAGATGTCCAAGAGTGATGGTGGCGGC
GGCGGTGGTGGTGGTAGAAAAAAGCGAAAAGGCTGACTGGTGGCTATTAA
TTGGGTGTGCCGTGTGTCACGCCTGGTGACACGTAGTGTGTTGCCGCCAT
TGCGGTAGCGCAGCTAGTGTCGGAATGGTTCTTTCAGCCATACTGAAGCT
CGATACGGTTGGCTCTCCTCACCTGGCATGCGGAGCTGCCTCGTTATGGA
TAAGTTCAGCCACAAGCTGTGGTCTTGTTGGGCCTCTTCTCTCTTTTGCG
TCGGCACTGCTACTGCTGTGTTCTGTAAGTGCCGTTTCAACTTGTTTGGT
ACGTTCATCAGTCATGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1014:7354..9871+

>mRNA_P-lacustris_contig1014.225.1 ID=mRNA_P-lacustris_contig1014.225.1|Name=mRNA_P-lacustris_contig1014.225.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1770bp|location=Sequence derived from alignment at P-lacustris_contig1014:7354..9871+ (Pleurocladia lacustris SAG_25_93)
ATGCTGACAATCGTGAAAGGTGCCGAAGAAGTGGCGAGAGCTCGAGCGAA
TCGGAAATATCGAAGCAGCAAGAAAAAATCGGTGAACACGGACCGTTCTC
TCCCAGGACATCTCGGAGTTGCTGTTTCGAGAGATGCTGACAATCGTGAA
AGGTGCCGAAGAAGTGGCGAGAGCTCGAGCGAATCGGAAATATCGAAGCA
GCAAGAAAAAATCGGTGAACACGGACCGTTCTCTCCCAGGACATCTCGGA
GTTGCTGTTTCGAGAGCCCAGAACGCAGGAGACACCCCAGGATCAACCAG
CTCCGAACCCTCGGACGCCACCTCGAATTTCGGCGCGGCAGACCTCACGT
CGGACAACCCCAGCCTACCCCTAGAAAGCGCCTCCAACGCTGCCCCTGGT
GGGCAGTCTTTGGGTTCGTGGCTCATGCCAACGTCTTCCCCGACGGCAGC
GACCAAGGTCAACAAGAGACGGAGGCAGCGGCCGTCGCAAGGCACAGAGA
GCTCTGACGTTCCGCGCGACCGCAGTAGCGGCACGAGCACGTGGGCGTCG
CTTTCCCGGGGGCAGGATGGGCAGAGCGGTGGCACGTTGTCCGCATGGCT
CGAGCCACGGCAGCCGGACCCCAGTCGCAAGAAACTGTCCGAGCGAGGCG
GGATTGTAGATGCCTCCGTAGGGGAGCAAGGGCCCACGGGTGGATCCTCT
GATCATGAATACGATGATGATGATGGCAGCGGCGCGTGGATGTCGGATAG
GCTCGAGGGCCTCGATCCCAGGGGGGCAGCTAGCCCAGAACGCAGGAGAC
ACCCCAGGATCAACCAGCTCCGAACCCTCGGACGCCACCTCGAATTTCGG
CGCGGCAGACCTCACGTCGGACAACCCCAGCCTACCCCTAGAAAGCGCCT
CCAACGCTGCCCCTGGTGGGCAGTCTTTGGGTTCGTGGCTCATGCCAACG
TCTTCCCCGACGGCAGCGACCAAGGTCAACAAGAGACGGAGGCAGCGGCC
GTCGCAAGGCACAGAGAGCTCTGACGTTCCGCGCGACCGCAGTAGCGGCA
CGAGCACGTGGGCGTCGCTTTCCCGGGGGCAGGATGGGCAGAGCGGTGGC
ACGTTGTCCGCATGGCTCGAGCCACGGCAGCCGGACCCCAGTCGCAAGAA
ACTGTCCGAGCGAGGCGGGATTGTAGATGCCTCCGTAGGGGAGCAAGGGC
CCACGGGTGGATCCTCTGATCATGAATACGATGATGATGATGGCAGCGGC
GCGTGGATGTCGGATAGGCTCGAGGGCCTCGATCCCAGGGGGGCAGCTAG
AGCCAAGGACAGCTGGACGGACAGGGAGAGGCGAAATTTGACGTACACAG
ACATCGCCTTAGGAGCCAAACGCAAAGGGAGAGGCCGCGTTGGTGTCAGG
GGCTGGAAAACCAAGTCCGCCGGAAAAAAAGCTTTCATGGCAGCTGGGCG
GGGCGGTGGGGCGGCCTTCGTCAAGATGTCCAAGAGTGATGGTGGCGGCG
GCGGTGGTGGTGGTAGAAAAAAGCGAAAAGGCTGAAGCCAAGGACAGCTG
GACGGACAGGGAGAGGCGAAATTTGACGTACACAGACATCGCCTTAGGAG
CCAAACGCAAAGGGAGAGGCCGCGTTGGTGTCAGGGGCTGGAAAACCAAG
TCCGCCGGAAAAAAAGCTTTCATGGCAGCTGGGCGGGGCGGTGGGGCGGC
CTTCGTCAAGATGTCCAAGAGTGATGGTGGCGGCGGCGGTGGTGGTGGTA
GAAAAAAGCGAAAAGGCTGA
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