|
|
Homology
BLAST of mRNA_P-lacustris_contig101.192.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI) HSP 1 Score: 257 bits (656), Expect = 1.340e-75 Identity = 163/283 (57.60%), Postives = 190/283 (67.14%), Query Frame = 3
Query: 51 DSPREGDGAAEFVFKTARRVLTVLESGEYFGESGVLTYISGGSKASTAGSPVTEQFYIVARTSVEMLVLRRKHFNIIDKPMLDILKANYSARLQWRARRKQEAHRGRAVLRAAKKALGQAAARAGGDEDSLAQDHQKLETYPQNNGAGGGDVRPFPSGPSPKSSVDGDHVKALLAQRGGRRSVASFNVSGAPPLLHGDHGMMNRHSHDHSRGDHGTTDSNRMALVSKESRHGHDLFGTDGEKEGGSGNEGGDDVSLAGLSLASGDSMQFSVDSGWLPNVEWRN 899
D PREGDGAAEFV+KTARRVLTVLESGEYFGESGVLTY +GGSK+S A PVTEQF +VARTSVEMLVLRR+HFNII PML+I+KAN++ARLQWRA+RKQ+AHRGRAVLRAAK+ALGQAAAR GG+ED + Q QK Q+ A G P + D +LLAQR R SV + SG L G+ H H GD G D +VS G + G + E + G GGDD SLAGLS+ASGDSMQ+SVDSG P ++ N
Sbjct: 109 DIPREGDGAAEFVYKTARRVLTVLESGEYFGESGVLTYFNGGSKSSAAAPPVTEQFCLVARTSVEMLVLRRQHFNIIAMPMLEIIKANHAARLQWRAQRKQDAHRGRAVLRAAKRALGQAAARVGGEEDPIFQSCQKQLVNSQSRTAATSAAGNSSQGARPSAPADEGRNTSLLAQRQERGSVTKSHSSGWSTLPRGEPSFAKHHHH--PPGDLGANDL-AGTVVSMTWGAGRNPMGGEEEHQDG----GGDDKSLAGLSVASGDSMQYSVDSG--PTHQYNN 382
BLAST of mRNA_P-lacustris_contig101.192.1 vs. uniprot
Match: A0A835Z9P8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.180e-11 Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3
Query: 102 RRVLTVLESGEYFGESGVLTYISGGSKASTAG-------------------SPVTEQFYIVARTSVEMLVLRRKHFNIIDKPMLDILKANYSARLQWRARRKQEAHRGRAVLRA 386
RRVL +LE+GE+ GESG+L S G P+TE F +VART+V+ LVLR +H+ IID L+++++ ++ R WR RK+EAHR R V+RA
Sbjct: 1098 RRVLAILEAGEHLGESGLLQAASVGGWGXXXXXXXXXXXXXXXXXXXXGKREPITESFSVVARTTVQALVLRARHYAIIDANTLELVRSAHAVRALWRRARKKEAHRARGVVRA 1211
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1629 |
| Cds size | 1245 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815278.5731733-UTR-P-lacustris_contig101:151457..151552 | 1622815278.5731733-UTR-P-lacustris_contig101:151457..151552 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 151458..151552 + |
| 1693493446.422554-UTR-P-lacustris_contig101:151457..151552 | 1693493446.422554-UTR-P-lacustris_contig101:151457..151552 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 151458..151552 + |
| 1622815278.5833008-UTR-P-lacustris_contig101:152189..152339 | 1622815278.5833008-UTR-P-lacustris_contig101:152189..152339 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 152190..152339 + |
| 1693493446.4335403-UTR-P-lacustris_contig101:152189..152339 | 1693493446.4335403-UTR-P-lacustris_contig101:152189..152339 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 152190..152339 + |
| 1622815278.6473904-UTR-P-lacustris_contig101:155283..155422 | 1622815278.6473904-UTR-P-lacustris_contig101:155283..155422 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 155284..155422 + |
| 1693493446.4884682-UTR-P-lacustris_contig101:155283..155422 | 1693493446.4884682-UTR-P-lacustris_contig101:155283..155422 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig101 155284..155422 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815278.5961516-CDS-P-lacustris_contig101:152339..152384 | 1622815278.5961516-CDS-P-lacustris_contig101:152339..152384 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 152340..152384 + |
| 1693493446.4432597-CDS-P-lacustris_contig101:152339..152384 | 1693493446.4432597-CDS-P-lacustris_contig101:152339..152384 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 152340..152384 + |
| 1622815278.6058211-CDS-P-lacustris_contig101:152690..152822 | 1622815278.6058211-CDS-P-lacustris_contig101:152690..152822 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 152691..152822 + |
| 1693493446.45253-CDS-P-lacustris_contig101:152690..152822 | 1693493446.45253-CDS-P-lacustris_contig101:152690..152822 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 152691..152822 + |
| 1622815278.6159048-CDS-P-lacustris_contig101:153167..153616 | 1622815278.6159048-CDS-P-lacustris_contig101:153167..153616 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 153168..153616 + |
| 1693493446.4609747-CDS-P-lacustris_contig101:153167..153616 | 1693493446.4609747-CDS-P-lacustris_contig101:153167..153616 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 153168..153616 + |
| 1622815278.6246507-CDS-P-lacustris_contig101:154267..154557 | 1622815278.6246507-CDS-P-lacustris_contig101:154267..154557 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 154268..154557 + |
| 1693493446.4696352-CDS-P-lacustris_contig101:154267..154557 | 1693493446.4696352-CDS-P-lacustris_contig101:154267..154557 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 154268..154557 + |
| 1622815278.6334465-CDS-P-lacustris_contig101:154954..155283 | 1622815278.6334465-CDS-P-lacustris_contig101:154954..155283 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 154955..155283 + |
| 1693493446.4784715-CDS-P-lacustris_contig101:154954..155283 | 1693493446.4784715-CDS-P-lacustris_contig101:154954..155283 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig101 154955..155283 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig101.192.1 >prot_P-lacustris_contig101.192.1 ID=prot_P-lacustris_contig101.192.1|Name=mRNA_P-lacustris_contig101.192.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=415bp
MLVLRRKHFNIIDKPMLDILKANYSARLQWRARRKQEAHRGRAVLRAAKK ALGQAAARAGGDEDSLAQDHQKLETYPQNNGAGGGDVRPFPSGPSPKSSV DGDHVKALLAQRGGRRSVASFNVSGAPPLLHGDHGMMNRHSHDHSRGDHG TTDSNRMALVSKESRHGHDLFGTDGEKEGGSGNEGGDDVSLAGLSLASGD SMQFSVDSGWLPNVEWRNLRPGGGAAGGLEGVQGYGNGHDAQQTLHTDRS QHHQPDGWDPGGNTKPLGVLAGSVSLPNFGLPTGLGGGGVAGRKLAFRGV KAAVLGMHSGKPTYTGHKQTGLHGSKSFGAFWGVNSQQADGGGQSNRGNP VCSPRPPLDRSNRLKNGDVATERKRSDVSSPAPETHRHGNPSTTRKGANT RRSGGGGRGVNSRF* back to topmRNA from alignment at P-lacustris_contig101:151458..155422+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig101.192.1 ID=mRNA_P-lacustris_contig101.192.1|Name=mRNA_P-lacustris_contig101.192.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3965bp|location=Sequence derived from alignment at P-lacustris_contig101:151458..155422+ (Pleurocladia lacustris SAG_25_93) GGCGAGGCAGTAGCAGGGGAAAGACAGGGGGAAAGACGGACGGAACACAA
GATAGTCCCCGGGAGGGGGACGGGGCAGCAGAATTTGTCTTTAAGGTACG
TTTTCAAGCGATGGTAATTCAGCTTAATGATTTCTGAACAGGATAAATAC
AATTGAAAACTTGGGGGTTGTGAAATGTGCTTGCCTTTTTCCTGTCCGGG
GTTCTCATCCTGTCGTGTACGAACGTAGTTACTGGTGTCACCCCTCACCC
CATCGGAGGAAATGATACGGGTCAGGCTGTTCTGCACGAAAATAAACAAA
ATGAAGAAGTAAAATTGGACTACTACCGAGCGGAGCAACGCGTTGCATGG
CTTAAAGAAGACACCACCTACCTGTATTTTCGGCGCATGCAACTATTCAT
GTTGGAAGCGTGGTGCCTCCTTGGTTTGCTTGAATGACGATTATTGTACA
CGACCATTGACGTTAACCTAGGGGGCCCCAACTTGTGAAATGCATCTACA
GTCCCCCATGCTGTGACACACGTGGTACAACATGACCACCCCGGGAATTG
TTAGGCACGCACTCGCCAACCCAACCCTACCGCGCTCCTTGCACATTTGA
CATTTGATACAAACGCGAATGCATGCTTAATGAGTCAGTTTGAGGGCGGC
AATATTCCTTGCCCAATTGCATGCCATTCACTTGCTAACAAATGTTCTAT
TTATGTTGTGAATCGTCACGGCAACCTGACAGACGGCTAGAAGGGTGCTG
ACGGTGTTGGAGAGCGGGGAGTACTTCGGAGAGTCCGGCGTTCTGACGTA
TATCAGTGGCGGCAGTAAGGCCTCGACAGCAGGTTCTCCCGTTACTGAGC
AGTTCTACATCGTGGCACGCACCAGTGTGGAGATGCTTGTACTTCGCCGG
AAGCACTTCAACATAATCGACAAACCGGTATGACATTGTTGAAAAATGGC
ACCTTGGTACGTACGCAGGTGCTTTTGTTAGATGATTAGGCTGCAGCTGT
TGGCGCCTTCCGGCCAGCGACAATTGTGTGCTTCGTTGAGCAACCCCGTG
GACTGCTTTGTTGGTATTGTAGTCAATTTATGGCAATCGTTTTTTATCAC
ACATACGTTTGCCCTGCGTTTTATGATAGAACAGTCCGTCTTTGCTGACC
CTTTCACGTGTTGTCAACGGGTGACAACGAAGTCTAACGGCTCATGTAAA
GTTGTGCGCCTTTCTTGGGCGCATCATTCGCAGATGCTGGATATCCTCAA
AGCAAATTACTCTGCCCGCCTCCAGTGGAGAGCTCGGCGCAAGCAGGAGG
CACACCGGGGGAGAGCGGTACTGAGAGCGGCGAAGAAAGCGCTGGGTCAG
GCAGCCGCGAGAGCGGTGAGAAGAAACGATGTACCATCAGGCATCTTGTC
GTAGTTTTAGACCCCACGGATGTATTGCGGTTAGATCCGGTGTTGAGATT
AGCGGTATTGGCCCTGGAGCGACTGCGACAACTATGCCGTCTTCGTCGTG
GGAGAAATACATCAGTGGGAATCGAGACTGCATGGTACAACGCCCTAGCT
TTGTCGGCGGTAGTAAGTAAAGGGGTTAGTTGCTCTTACACCTGCATTCG
CTGCATGAGACATTTACACTGAGAATCCGGTGTTGATTATGCCAAGCTCG
TCGATCAACCCGCCCTTCCGCCAATTTCATCTGTGCGTCCCCCTCTTTAT
TCCGAACAAGGGCGGTGACGAAGATTCACTCGCTCAGGATCATCAAAAAC
TGGAAACATATCCACAGAACAACGGTGCCGGGGGCGGTGATGTTCGACCT
TTCCCAAGCGGGCCTTCGCCGAAATCATCTGTAGACGGCGACCACGTCAA
GGCACTCCTAGCACAACGAGGAGGACGCCGGAGTGTGGCATCCTTCAATG
TTTCAGGCGCGCCTCCCTTGTTACACGGTGATCACGGCATGATGAATCGC
CATTCTCATGATCACTCGAGAGGAGACCATGGAACGACCGATTCCAACCG
AATGGCGCTTGTTTCAAAGGAATCGAGGCATGGACACGATCTATTTGGGA
CGGATGGAGAGAAAGAAGGCGGCAGCGGTAACGAAGGAGGTGACGATGTG
TCACTGGCAGGGCTGAGTCTGGCATCTGGGGATAGCATGCAGTTCAGCGT
AGATTCTGGGTGAGAACGAGGTGAATGTTGATGTCGACTGTCACCCTAAT
TATTCTGAACATCAGGGTTACCACTGCCAGTTTCTTGGACAACCTGTTGG
GGTCAAACAGGAGGAAGGCCAGCCACACACCACACATGGGTGTTTTACCT
GTTCCTCCTCCTTCCATCTGCGGCTTTTGCCTTCTTCTTTTTTTATCGCG
AGAAGGGTCCATCCGTCCCTTTCCCTCGTCGATATTGAACAAAAATAAAT
CCCTAACTTCTTCCACTTCTTTGGGCATGATATGAGGAAAATCACAGTTC
TCGTGACTGCGCCGAGGCTCGATTTCACGTCCAAACAATAGATGGTTGTC
AACTGATTCACCGGGGTGATCGGCAGTGTAGAATGGGAGTAGCATACTCT
AGAAGGGGTGTGTGGTGCAGGCGGGGTAACAGGTGGACAAAGACAGTAAG
AAGGAGGAATTTGTGACGGCGTTCATGTTGTTCGTCATCGTTGCTGAAGG
AAAGGATCGAAGCGGGGCCTTCCGCAGAAAGCCTAGTCCTCGCCTCTGAC
GCCCACGAACAGACGAGCCCGCTCACTATCATGGATTGGCGATGACATTC
AGATGCTGCTCACAAGAGGTTGATCACTATTGACAAGCAATGTTTTCTTG
ATCATATCAGGTGGCTCCCAAATGTAGAGTGGAGAAACCTCCGCCCAGGC
GGCGGTGCCGCTGGCGGTCTCGAGGGGGTCCAAGGCTACGGCAATGGTCA
TGACGCACAACAAACACTACACACAGATCGATCCCAACACCATCAACCAG
ATGGTTGGGATCCGGGGGGAAACACTAAGCCGTTAGGAGTCTTGGCAGGT
TCGGTGTCTCTCCCAAACTTCGGATTGCCCACCGGGTTGGGAGGTGGAGG
TGTTGCAGGGAGAAAACTGGCCTTCCGAGGAGTGAAGGCAGCGGTGCTGG
GTGAGAAAGAGTCAGTTAAGCCCGCTGCACCTGGTACCAAAGCGATATTT
CATTCGAGTCTCAAAAAAAGGGTATTTACCATCGCCTTATTGCAGGTTGC
ATCCTTACGATACAAGTGCAATGTTGGTGGTCATACGAATGTGAGCCGCT
CAGGTCTGAAAATGGTGGGTAGCCGTCGACTCTATTCTTCACCCCCATGT
TAGATGTTTCTTTTGCCCACTACTAGAGTCAACTGTTGGCCTCTTCACCA
TCCCAAAACGGAGTGTTCCATCTCTGTCTGTGGTGCATACATGGCAACAA
CACGACAAGCTACTGCTGCCGAGGAGCTCAACGAACAATATCGCCAATTA
TTTCAGCATGTCACAGACAATAACTCTCCAAAATGGCAATGCTCCAGGAA
TGCACAGCGGGAAGCCTACATACACGGGGCACAAACAGACCGGCCTACAT
GGCAGTAAAAGCTTCGGTGCCTTCTGGGGAGTCAACTCACAGCAAGCCGA
TGGGGGTGGCCAAAGCAACCGAGGCAACCCCGTTTGCTCTCCGCGACCAC
CCTTGGACAGGAGCAATCGACTCAAGAACGGCGACGTGGCCACCGAGAGG
AAACGAAGTGACGTCTCTTCCCCTGCGCCAGAAACACATCGCCACGGAAA
TCCATCTACTACTCGAAAAGGCGCCAATACGCGGAGGAGCGGGGGTGGGG
GTCGGGGCGTTAATTCCCGATTTTGAATTCATTCCGGCGGTTAAGAGTAT
TGTAAAACTTACTCCTGTTCGAGGCATAAGTCGCGTTTGGGCGAACCAGT
GAATTGAGGCTCGCTTTAGCGGTGCTGTTGTGTGTTCGGGGCCAAGGCGA
TGTTTTGTAGGGTTT back to topCoding sequence (CDS) from alignment at P-lacustris_contig101:151458..155422+ >mRNA_P-lacustris_contig101.192.1 ID=mRNA_P-lacustris_contig101.192.1|Name=mRNA_P-lacustris_contig101.192.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2490bp|location=Sequence derived from alignment at P-lacustris_contig101:151458..155422+ (Pleurocladia lacustris SAG_25_93) ATGCTTGTACTTCGCCGGAAGCACTTCAACATAATCGACAAACCGATGCT TGTACTTCGCCGGAAGCACTTCAACATAATCGACAAACCGATGCTGGATA TCCTCAAAGCAAATTACTCTGCCCGCCTCCAGTGGAGAGCTCGGCGCAAG CAGGAGGCACACCGGGGGAGAGCGGTACTGAGAGCGGCGAAGAAAGCGCT GGGTCAGGCAGCCGCGAGAGCGATGCTGGATATCCTCAAAGCAAATTACT CTGCCCGCCTCCAGTGGAGAGCTCGGCGCAAGCAGGAGGCACACCGGGGG AGAGCGGTACTGAGAGCGGCGAAGAAAGCGCTGGGTCAGGCAGCCGCGAG AGCGGGCGGTGACGAAGATTCACTCGCTCAGGATCATCAAAAACTGGAAA CATATCCACAGAACAACGGTGCCGGGGGCGGTGATGTTCGACCTTTCCCA AGCGGGCCTTCGCCGAAATCATCTGTAGACGGCGACCACGTCAAGGCACT CCTAGCACAACGAGGAGGACGCCGGAGTGTGGCATCCTTCAATGTTTCAG GCGCGCCTCCCTTGTTACACGGTGATCACGGCATGATGAATCGCCATTCT CATGATCACTCGAGAGGAGACCATGGAACGACCGATTCCAACCGAATGGC GCTTGTTTCAAAGGAATCGAGGCATGGACACGATCTATTTGGGACGGATG GAGAGAAAGAAGGCGGCAGCGGTAACGAAGGAGGTGACGATGTGTCACTG GCAGGGCTGAGTCTGGCATCTGGGGATAGCATGCAGTTCAGCGTAGATTC TGGGGCGGTGACGAAGATTCACTCGCTCAGGATCATCAAAAACTGGAAAC ATATCCACAGAACAACGGTGCCGGGGGCGGTGATGTTCGACCTTTCCCAA GCGGGCCTTCGCCGAAATCATCTGTAGACGGCGACCACGTCAAGGCACTC CTAGCACAACGAGGAGGACGCCGGAGTGTGGCATCCTTCAATGTTTCAGG CGCGCCTCCCTTGTTACACGGTGATCACGGCATGATGAATCGCCATTCTC ATGATCACTCGAGAGGAGACCATGGAACGACCGATTCCAACCGAATGGCG CTTGTTTCAAAGGAATCGAGGCATGGACACGATCTATTTGGGACGGATGG AGAGAAAGAAGGCGGCAGCGGTAACGAAGGAGGTGACGATGTGTCACTGG CAGGGCTGAGTCTGGCATCTGGGGATAGCATGCAGTTCAGCGTAGATTCT GGGTGGCTCCCAAATGTAGAGTGGAGAAACCTCCGCCCAGGCGGCGGTGC CGCTGGCGGTCTCGAGGGGGTCCAAGGCTACGGCAATGGTCATGACGCAC AACAAACACTACACACAGATCGATCCCAACACCATCAACCAGATGGTTGG GATCCGGGGGGAAACACTAAGCCGTTAGGAGTCTTGGCAGGTTCGGTGTC TCTCCCAAACTTCGGATTGCCCACCGGGTTGGGAGGTGGAGGTGTTGCAG GGAGAAAACTGGCCTTCCGAGGAGTGAAGGCAGCGGTGCTGGGTGGCTCC CAAATGTAGAGTGGAGAAACCTCCGCCCAGGCGGCGGTGCCGCTGGCGGT CTCGAGGGGGTCCAAGGCTACGGCAATGGTCATGACGCACAACAAACACT ACACACAGATCGATCCCAACACCATCAACCAGATGGTTGGGATCCGGGGG GAAACACTAAGCCGTTAGGAGTCTTGGCAGGTTCGGTGTCTCTCCCAAAC TTCGGATTGCCCACCGGGTTGGGAGGTGGAGGTGTTGCAGGGAGAAAACT GGCCTTCCGAGGAGTGAAGGCAGCGGTGCTGGGAATGCACAGCGGGAAGC CTACATACACGGGGCACAAACAGACCGGCCTACATGGCAGTAAAAGCTTC GGTGCCTTCTGGGGAGTCAACTCACAGCAAGCCGATGGGGGTGGCCAAAG CAACCGAGGCAACCCCGTTTGCTCTCCGCGACCACCCTTGGACAGGAGCA ATCGACTCAAGAACGGCGACGTGGCCACCGAGAGGAAACGAAGTGACGTC TCTTCCCCTGCGCCAGAAACACATCGCCACGGAAATCCATCTACTACTCG AAAAGGCGCCAATACGCGGAGGAGCGGGGGTGGGGGTCGGGGCGTTAATT CCCGATTTTGAGAATGCACAGCGGGAAGCCTACATACACGGGGCACAAAC AGACCGGCCTACATGGCAGTAAAAGCTTCGGTGCCTTCTGGGGAGTCAAC TCACAGCAAGCCGATGGGGGTGGCCAAAGCAACCGAGGCAACCCCGTTTG CTCTCCGCGACCACCCTTGGACAGGAGCAATCGACTCAAGAACGGCGACG TGGCCACCGAGAGGAAACGAAGTGACGTCTCTTCCCCTGCGCCAGAAACA CATCGCCACGGAAATCCATCTACTACTCGAAAAGGCGCCAATACGCGGAG GAGCGGGGGTGGGGGTCGGGGCGTTAATTCCCGATTTTGA back to top
|