mRNA_P-lacustris_contig101.194.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.194.1
Unique NamemRNA_P-lacustris_contig101.194.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.194.1 vs. uniprot
Match: A0A6H5KL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL80_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.110e-32
Identity = 83/158 (52.53%), Postives = 103/158 (65.19%), Query Frame = 1 
Query:  742 HEIDTSKARTQESGASRGXXXXXXXXXXXXXAGA------LSEFRATHER--GEAEVMAE---GEVNIAKQVR-----MEECRAAGPCLWCEEDELSLEVCKETGRRQEVRCTIEATGQNTLGGAAIGGIGLLPSSVKYRSCTHTEEDDIQGLFHFWV 1167
            HE +  K R QESGA  GXXXXXXXX      GA      L+E R T ER  G+AEV+      + N  ++V      +EEC+A GPC+WCE+DE+SLE CKETGRR+EVRCT++   QN   G A G +G+LPSSVKYRSC + EED+  GL HFW+
Sbjct:  212 HETNAPKERAQESGAD-GXXXXXXXXNISGNVGAAAVGAALAELRETDEREGGKAEVVVAVGADDANEDQEVEXXXEAVEECKAIGPCVWCEKDEVSLEYCKETGRREEVRCTVQGAAQNMAAGVAGGAVGVLPSSVKYRSCPYAEEDEFLGLLHFWI 368
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BLAST of mRNA_P-lacustris_contig101.194.1 vs. uniprot
Match: D7G1T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.390e-30
Identity = 51/79 (64.56%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:  931 EECRAAGPCLWCEEDELSLEVCKETGRRQEVRCTIEATGQNTLGGAAIGGIGLLPSSVKYRSCTHTEEDDIQGLFHFWV 1167
            EEC+A GPC+WCE+DE++LE C+ETGRR+EVRCT++   QN   G A G +G+LPSSVKYRSC + EEDD  GLFHFW+
Sbjct:  139 EECKATGPCVWCEKDEVNLEYCRETGRREEVRCTVQGAEQNMAAGGAGGAVGVLPSSVKYRSCAYAEEDDFLGLFHFWI 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL80_9PHAE4.110e-3252.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T5_ECTSI2.390e-3064.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:167138..168882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004220.1
Exons2
Model size1169
Cds size1167
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.9480093-CDS-P-lacustris_contig101:167137..1672841622815276.9480093-CDS-P-lacustris_contig101:167137..167284Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 167138..167284 -
1693493445.1937077-CDS-P-lacustris_contig101:167137..1672841693493445.1937077-CDS-P-lacustris_contig101:167137..167284Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 167138..167284 -
1622815276.9614537-CDS-P-lacustris_contig101:167862..1688821622815276.9614537-CDS-P-lacustris_contig101:167862..168882Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 167863..168882 -
1693493445.2161653-CDS-P-lacustris_contig101:167862..1688821693493445.2161653-CDS-P-lacustris_contig101:167862..168882Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 167863..168882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.194.1prot_P-lacustris_contig101.194.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 167138..168882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.194.1

>prot_P-lacustris_contig101.194.1 ID=prot_P-lacustris_contig101.194.1|Name=mRNA_P-lacustris_contig101.194.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=389bp
FNSPLQSLHEHDASSPRICSTTAVDERVTSTAPCATFSIEFELTLYELSS
ILDRPSLVQGITADAGAMTRRYHMAAASVALATVLLPSDLVCVRAAPTSR
TKGVEARAGSSKDHRKRSGSGGGGHFSKASSVNATGVDDSPAIAASDGTG
GDDVGADLLRSGQADDPAKVASVAAAVDAGEERVVERADGGAGEEAPVVA
ETQEGPKKSKVLSDREVNQRRQIESRRDKQEGVNRHGTIREGGSGAGHEI
DTSKARTQESGASRGGGGGGNLSAGAAAAGALSEFRATHERGEAEVMAEG
EVNIAKQVRMEECRAAGPCLWCEEDELSLEVCKETGRRQEVRCTIEATGQ
NTLGGAAIGGIGLLPSSVKYRSCTHTEEDDIQGLFHFWV
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mRNA from alignment at P-lacustris_contig101:167138..168882-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.194.1 ID=mRNA_P-lacustris_contig101.194.1|Name=mRNA_P-lacustris_contig101.194.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1745bp|location=Sequence derived from alignment at P-lacustris_contig101:167138..168882- (Pleurocladia lacustris SAG_25_93)
TTCAACTCTCCGCTTCAGAGTTTGCACGAACATGATGCATCATCCCCAAG
AATCTGTTCTACAACAGCAGTCGATGAGAGAGTGACATCGACTGCTCCTT
GTGCAACGTTTTCGATTGAATTTGAACTAACTCTCTACGAACTCTCTTCG
ATCCTTGACCGCCCATCTCTTGTCCAGGGTATCACTGCCGACGCTGGTGC
CATGACTCGCAGGTATCACATGGCGGCAGCCTCAGTTGCGCTCGCGACGG
TGCTGCTGCCTTCCGATCTGGTCTGTGTCAGGGCAGCACCGACGAGTCGC
ACGAAAGGGGTCGAAGCGAGGGCGGGGTCGAGTAAAGACCACCGAAAACG
CTCGGGCAGCGGGGGCGGCGGCCACTTTTCCAAGGCGTCGAGCGTAAACG
CGACCGGGGTGGATGACTCGCCAGCGATCGCGGCTTCTGACGGGACTGGC
GGCGATGACGTGGGGGCCGACCTACTGCGGAGTGGTCAAGCAGATGATCC
TGCGAAAGTGGCTTCGGTGGCAGCGGCGGTGGACGCAGGGGAGGAAAGAG
TTGTTGAGCGGGCGGACGGTGGCGCGGGGGAGGAAGCGCCCGTTGTGGCG
GAGACGCAAGAAGGGCCGAAGAAGTCGAAGGTACTGTCGGATCGGGAAGT
AAACCAACGACGACAAATCGAGAGCAGGAGAGACAAGCAGGAAGGGGTCA
ATCGACACGGTACCATCAGAGAAGGTGGGAGTGGCGCCGGGCACGAGATC
GACACTTCGAAAGCAAGGACACAAGAAAGTGGTGCCAGCCGCGGCGGCGG
CGGCGGCGGCAACCTAAGCGCCGGCGCTGCTGCCGCCGGGGCGCTGTCAG
AGTTTCGGGCGACCCACGAGCGGGGGGAGGCGGAGGTCATGGCTGAGGGC
GAGGTTAACATTGCGAAGCAGGTGCGGATGGAAGAGTGCAGGGCCGCCGG
GCCATGCTTGTGGTGTGAGGAAGACGAGTTGAGCCTGGAGGTCTGCAAGG
AGACGGGCCGACGGCAGGAGGTGATTGGGATTGGTAGCAAGCACCCTTGT
CTTTCGAGGTGGAGATGAAATGGATGTGGTTTCTCGCTCGCTCTGAAAAA
TTCGAGCAGGTACAGTCGTACGTGAGAATCTTGGGCTTTCGTATGGAACA
ACGCACGCAGTCAAGAGGTGCGGATCGGGTGCGTGTGGAGTGCCATGCTC
CCACGAGCGCCTCCTCGATGACGAGTCTAGTGGACTAGGCGAAGCGATTT
TCGCAAAGCTGATTGGTCGGGCAAGTTGCTTCGTAGCGCTGTGCCGTTTT
TGCTTTGCCAAGTGTTGACACGTGCATTCGTGCTTGACCAATTTCTCGCC
CCTACTCATCACTGTTGCTGTCGGTAGCACTTGGTGTTGTGTCAAGATAA
CACGGGCGTTTCGTTAGGGCAAGAATCATTGGGTCGGGTGCACCCTCTGA
ATTTTTTGCCCCAAAATCTTGAGGGTCAGCTTCCGTGGTTTTCGTGCCCG
CTTCGCTCAACTCGCTCCGTTTCTCCTTCCTCCGCTTGCCTTGCCGTTCA
CCCCCGGATTGTTTCGCTCATTCGCGTTGGTGCTGCTTACCGCTACAGGT
GCGGTGTACCATCGAGGCCACGGGGCAGAACACGCTTGGGGGCGCCGCAA
TCGGCGGGATTGGCCTGTTGCCAAGCTCGGTCAAGTACCGGTCATGCACC
CACACGGAGGAGGACGACATCCAAGGGCTTTTCCATTTTTGGGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig101:167138..168882-

>mRNA_P-lacustris_contig101.194.1 ID=mRNA_P-lacustris_contig101.194.1|Name=mRNA_P-lacustris_contig101.194.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2334bp|location=Sequence derived from alignment at P-lacustris_contig101:167138..168882- (Pleurocladia lacustris SAG_25_93)
TTCAACTCTCCGCTTCAGAGTTTGCACGAACATGATGCATCATCCCCAAG
AATCTGTTCTACAACAGCAGTCGATGAGAGAGTGACATCGACTGCTCCTT
GTGCAACGTTTTCGATTGAATTTGAACTAACTCTCTACGAACTCTCTTCG
ATCCTTGACCGCCCATCTCTTGTCCAGGGTATCACTGCCGACGCTGGTGC
CATGACTCGCAGGTATCACATGGCGGCAGCCTCAGTTGCGCTCGCGACGG
TGCTGCTGCCTTCCGATCTGGTCTGTGTCAGGGCAGCACCGACGAGTCGC
ACGAAAGGGGTCGAAGCGAGGGCGGGGTCGAGTAAAGACCACCGAAAACG
CTCGGGCAGCGGGGGCGGCGGCCACTTTTCCAAGGCGTCGAGCGTAAACG
CGACCGGGGTGGATGACTCGCCAGCGATCGCGGCTTCTGACGGGACTGGC
GGCGATGACGTGGGGGCCGACCTACTGCGGAGTGGTCAAGCAGATGATCC
TGCGAAAGTGGCTTCGGTGGCAGCGGCGGTGGACGCAGGGGAGGAAAGAG
TTGTTGAGCGGGCGGACGGTGGCGCGGGGGAGGAAGCGCCCGTTGTGGCG
GAGACGCAAGAAGGGCCGAAGAAGTCGAAGGTACTGTCGGATCGGGAAGT
AAACCAACGACGACAAATCGAGAGCAGGAGAGACAAGCAGGAAGGGGTCA
ATCGACACGGTACCATCAGAGAAGGTGGGAGTGGCGCCGGGCACGAGATC
GACACTTCGAAAGCAAGGACACAAGAAAGTGGTGCCAGCCGCGGCGGCGG
CGGCGGCGGCAACCTAAGCGCCGGCGCTGCTGCCGCCGGGGCGCTGTCAG
AGTTTCGGGCGACCCACGAGCGGGGGGAGGCGGAGGTCATGGCTGAGGGC
GAGGTTAACATTGCGAAGCAGGTGCGGATGGAAGAGTGCAGGGCCGCCGG
GCCATGCTTGTGGTGTGAGGAAGACGAGTTGAGCCTGGAGGTCTGCAAGG
AGACGGGCCGACGGCAGGAGTTCAACTCTCCGCTTCAGAGTTTGCACGAA
CATGATGCATCATCCCCAAGAATCTGTTCTACAACAGCAGTCGATGAGAG
AGTGACATCGACTGCTCCTTGTGCAACGTTTTCGATTGAATTTGAACTAA
CTCTCTACGAACTCTCTTCGATCCTTGACCGCCCATCTCTTGTCCAGGGT
ATCACTGCCGACGCTGGTGCCATGACTCGCAGGTATCACATGGCGGCAGC
CTCAGTTGCGCTCGCGACGGTGCTGCTGCCTTCCGATCTGGTCTGTGTCA
GGGCAGCACCGACGAGTCGCACGAAAGGGGTCGAAGCGAGGGCGGGGTCG
AGTAAAGACCACCGAAAACGCTCGGGCAGCGGGGGCGGCGGCCACTTTTC
CAAGGCGTCGAGCGTAAACGCGACCGGGGTGGATGACTCGCCAGCGATCG
CGGCTTCTGACGGGACTGGCGGCGATGACGTGGGGGCCGACCTACTGCGG
AGTGGTCAAGCAGATGATCCTGCGAAAGTGGCTTCGGTGGCAGCGGCGGT
GGACGCAGGGGAGGAAAGAGTTGTTGAGCGGGCGGACGGTGGCGCGGGGG
AGGAAGCGCCCGTTGTGGCGGAGACGCAAGAAGGGCCGAAGAAGTCGAAG
GTACTGTCGGATCGGGAAGTAAACCAACGACGACAAATCGAGAGCAGGAG
AGACAAGCAGGAAGGGGTCAATCGACACGGTACCATCAGAGAAGGTGGGA
GTGGCGCCGGGCACGAGATCGACACTTCGAAAGCAAGGACACAAGAAAGT
GGTGCCAGCCGCGGCGGCGGCGGCGGCGGCAACCTAAGCGCCGGCGCTGC
TGCCGCCGGGGCGCTGTCAGAGTTTCGGGCGACCCACGAGCGGGGGGAGG
CGGAGGTCATGGCTGAGGGCGAGGTTAACATTGCGAAGCAGGTGCGGATG
GAAGAGTGCAGGGCCGCCGGGCCATGCTTGTGGTGTGAGGAAGACGAGTT
GAGCCTGGAGGTCTGCAAGGAGACGGGCCGACGGCAGGAGGTGCGGTGTA
CCATCGAGGCCACGGGGCAGAACACGCTTGGGGGCGCCGCAATCGGCGGG
ATTGGCCTGTTGCCAAGCTCGGTCAAGTACCGGTCATGCACCCACACGGA
GGAGGACGACATCCAAGGGCTTTTCCATTTTTGGGTGGTGCGGTGTACCA
TCGAGGCCACGGGGCAGAACACGCTTGGGGGCGCCGCAATCGGCGGGATT
GGCCTGTTGCCAAGCTCGGTCAAGTACCGGTCATGCACCCACACGGAGGA
GGACGACATCCAAGGGCTTTTCCATTTTTGGGTG
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