mRNA_P-lacustris_contig101.191.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig101.191.1
Unique NamemRNA_P-lacustris_contig101.191.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig101.191.1 vs. uniprot
Match: D7G8M0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-5
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  223 SVAVMRMSSTYHLYKIALLVKTADAVKNS 309
            SVA+MRMSSTYHLYKIALLVKT DAVK+S
Sbjct:    5 SVAMMRMSSTYHLYKIALLVKTDDAVKDS 33
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8M0_ECTSI1.220e-589.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:149029..150394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.191.1prot_P-lacustris_contig101.191.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig101 149113..150394 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.760788-UTR-P-lacustris_contig101:149028..1491121622815276.760788-UTR-P-lacustris_contig101:149028..149112Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 149029..149112 +
1693493445.165164-UTR-P-lacustris_contig101:149028..1491121693493445.165164-UTR-P-lacustris_contig101:149028..149112Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig101 149029..149112 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815276.7696867-CDS-P-lacustris_contig101:149112..1492491622815276.7696867-CDS-P-lacustris_contig101:149112..149249Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 149113..149249 +
1693493445.177341-CDS-P-lacustris_contig101:149112..1492491693493445.177341-CDS-P-lacustris_contig101:149112..149249Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 149113..149249 +
1622815276.7782476-CDS-P-lacustris_contig101:150306..1503941622815276.7782476-CDS-P-lacustris_contig101:150306..150394Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 150307..150394 +
1693493445.1852763-CDS-P-lacustris_contig101:150306..1503941693493445.1852763-CDS-P-lacustris_contig101:150306..150394Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig101 150307..150394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig101.191.1

>prot_P-lacustris_contig101.191.1 ID=prot_P-lacustris_contig101.191.1|Name=mRNA_P-lacustris_contig101.191.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=75bp
MKLGTCSKFHVCVLIDLREHGTGTQNVSSVRAETGGKKAQRARAERSVAV
MRMSSTYHLYKIALLVKTADAVKNS
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mRNA from alignment at P-lacustris_contig101:149029..150394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig101.191.1 ID=mRNA_P-lacustris_contig101.191.1|Name=mRNA_P-lacustris_contig101.191.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1366bp|location=Sequence derived from alignment at P-lacustris_contig101:149029..150394+ (Pleurocladia lacustris SAG_25_93)
GTATTCTAGAAGGAGCGAGAGGTGCAGCCGAAGCTCACCCCTTCTCTCAG
GGTGGGGCTTGACCTCAAAAAACAAAATTGGAACATGAAACTTGGCACGT
GTTCCAAGTTTCATGTTTGTGTCTTAATTGACCTTCGTGAACATGGAACG
GGTACGCAGAATGTTTCAAGCGTGCGCGCAGAGACTGGGGGAAAAAAAGC
CCAACGTGCACGGGCAGAAAGGTTGGTGACCCCTTTCAGTGGATACCGTT
GGCGAGTGAACACTGTTTTCATATGCTAGGCATCAGGTCGAACAGGCGGT
GCTCGGACGTGTTGCTTCGTCTGTTGCAGTCAAAGGAAAGGCACCGGAAT
TTTTTCGCACACCTTCCATTCGAAAGCAAGCGCTACACCGACGTTTTTGG
GCTCGCGAAGCACCTGATGATGGCAATACAGGTGACGCCTCAATCGGTAG
CCGACAGCACGTGTGGCATGGACATGCCCAAGTGATTACACACATCCGTT
CAAGCAGAACAGTTTCAGACACGTTCCCACCGTTTGCCATCGATGAGCCC
GTTCCAAATGGACTGTTGAACTATTTTAAGGAACTCGTTGCTGAAAATAA
TCCGTGCGGCGGGATCAGCAAAACATGGACCCTACAGAAGTAGGTGGCTA
CAATTATTTCCAGGAATTTTTTGTGGTGTGGTTGGCCAAGTAGAGGGGGA
ATTTGACGCATGTTCCATGTTCAATTTGTTTTTGGAGGTCAAGCCCCACC
CTCACTCCGCAAACTCCGTAAATCTGCTTTCCTTCCTGGTCTTCTTCCTT
CGACTGTGATAGTCTATCACTCTCTGGGAGTCTTTCGTAGACCGCAAGCG
CCCATTCAACATCTGCAAAAAATCTACAGTGGTAGCAGTGTTTGCTACTG
CAGCGCAGACTAACATCTGCCGGCGTCAGCCTTTGCCACCACGTGCTGGG
AACCACACGGAATCACGTGCTGGGAACCACACGGAATCCCATCAACACTT
TGTCTATCGCTCTCTGTTCGCGCTGTGAAGCTCTTTGCAGCACTCAGCAG
CGAAGATGAATACGGACAGCTAAAAAGAGTACCCTCGCTGCTATCCTCAC
TGGCGCCCGCCATAAGTCACGTGAGGGTTGAGCTTTTTATCTGTTCAATA
GTGCTTGGTAACCGCCCATTTTTCTCGAAAAATACAAAAATACGGTTCAT
CCACACCAGCTCTTCCACTAACATTCCGGCCACATCATGAAATCTGTTCG
CTTGTATGATACCGGCTGTGCATGGCAGGAGTGTGGCGGTGATGAGGATG
AGTTCGACGTACCATCTGTACAAAATCGCTCTGCTCGTCAAAACGGCAGA
CGCCGTGAAAAACAGC
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Coding sequence (CDS) from alignment at P-lacustris_contig101:149029..150394+

>mRNA_P-lacustris_contig101.191.1 ID=mRNA_P-lacustris_contig101.191.1|Name=mRNA_P-lacustris_contig101.191.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=450bp|location=Sequence derived from alignment at P-lacustris_contig101:149029..150394+ (Pleurocladia lacustris SAG_25_93)
ATGAAACTTGGCACGTGTTCCAAGTTTCATGTTTGTGTCTTAATTGACCT
TCGTGAACATGGAACGGGTACGCAGAATGTTTCAAGCGTGCGCGCAGAGA
CTGGGGGAAAAAAAGCCCAACGTGCACGGGCAGAAAGATGAAACTTGGCA
CGTGTTCCAAGTTTCATGTTTGTGTCTTAATTGACCTTCGTGAACATGGA
ACGGGTACGCAGAATGTTTCAAGCGTGCGCGCAGAGACTGGGGGAAAAAA
AGCCCAACGTGCACGGGCAGAAAGGAGTGTGGCGGTGATGAGGATGAGTT
CGACGTACCATCTGTACAAAATCGCTCTGCTCGTCAAAACGGCAGACGCC
GTGAAAAACAGCGAGTGTGGCGGTGATGAGGATGAGTTCGACGTACCATC
TGTACAAAATCGCTCTGCTCGTCAAAACGGCAGACGCCGTGAAAAACAGC
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